HEADER PROTEIN BINDING 30-NOV-06 2JAX TITLE UNIVERSAL STRESS PROTEIN RV2623 FROM MYCOBATERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN TB31.7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UNIVERSAL STRESS PROTEIN RV2623, UNIVERSAL STRESS COMPND 5 PROTEIN FAMILY; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS USP, UNIVERSAL STRESS PROTEIN, ATP BINDING, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.OBERSCHALL,G.BOURENKOV,N.STRIZHOV,H.D.BARTUNIK REVDAT 2 24-FEB-09 2JAX 1 VERSN REVDAT 1 11-DEC-07 2JAX 0 JRNL AUTH A.OBERSCHALL,G.BOURENKOV,N.STRIZHOV,H.D.BARTUNIK JRNL TITL CRYSTAL STRUCTURE OF UNIVERSAL STRESS PROTEIN JRNL TITL 2 RV2623 FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 7953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.270 REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.324 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 388 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.536 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.878 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.818 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2067 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1927 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2825 ; 1.792 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4429 ; 3.716 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 6.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;21.910 ;22.683 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 312 ;13.768 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;12.141 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 330 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2264 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 404 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 652 ; 0.289 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2148 ; 0.278 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1051 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 969 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 57 ; 0.250 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.036 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.573 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 1.067 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.346 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.309 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1295 ; 4.761 ;10.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 531 ; 0.000 ;10.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2082 ; 7.601 ;10.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 766 ;12.206 ;20.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 743 ;17.527 ;30.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2JAX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-06. REMARK 100 THE PDBE ID CODE IS EBI-30691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8342 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.22 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 11.6 REMARK 200 R MERGE (I) : 0.13 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.6 REMARK 200 R MERGE FOR SHELL (I) : 0.34 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.5 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2 0.1M NAACT PH4.6 20% REMARK 280 ISOPROPANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.68933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.37867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.68933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.37867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.68933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 105.37867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.68933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 105.37867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ASN A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 PRO A 46 REMARK 465 GLU A 47 REMARK 465 VAL A 48 REMARK 465 ALA A 49 REMARK 465 THR A 50 REMARK 465 TRP A 51 REMARK 465 LEU A 52 REMARK 465 GLU A 53 REMARK 465 VAL A 54 REMARK 465 PRO A 55 REMARK 465 LEU A 56 REMARK 465 PRO A 57 REMARK 465 PRO A 58 REMARK 465 GLY A 59 REMARK 465 VAL A 60 REMARK 465 LEU A 61 REMARK 465 GLU A 150 REMARK 465 ASP A 151 REMARK 465 SER A 152 REMARK 465 VAL A 153 REMARK 465 MSE A 154 REMARK 465 PRO A 155 REMARK 465 HIS A 156 REMARK 465 PRO A 157 REMARK 465 GLN A 158 REMARK 465 GLN A 159 REMARK 465 SER A 295 REMARK 465 LEU A 296 REMARK 465 THR A 297 REMARK 465 LEU A 298 REMARK 465 GLU A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 244 CG CD OE1 NE2 REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 173 - NH2 ARG A 223 2.17 REMARK 500 O GLU A 229 - N TYR A 231 2.11 REMARK 500 O GLN A 251 - N SER A 253 2.02 REMARK 500 CZ ARG A 264 - CE MSE A 272 2.19 REMARK 500 O2B ATP A 1295 - UNK UNX A 1297 1.88 REMARK 500 O2G ATP A 1296 - UNK UNX A 1298 2.03 REMARK 500 O1A ATP A 1296 - UNK UNX A 1298 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 CG HIS A 92 NE2 HIS A 92 7555 2.06 REMARK 500 ND1 HIS A 92 NE2 HIS A 92 7555 1.94 REMARK 500 CD2 HIS A 92 CD2 HIS A 92 7555 2.10 REMARK 500 CD2 HIS A 92 NE2 HIS A 92 7555 1.38 REMARK 500 CE1 HIS A 92 CE1 HIS A 92 7555 1.38 REMARK 500 CE1 HIS A 92 NE2 HIS A 92 7555 1.15 REMARK 500 NE2 HIS A 92 CG HIS A 92 7555 2.06 REMARK 500 NE2 HIS A 92 ND1 HIS A 92 7555 1.94 REMARK 500 NE2 HIS A 92 CD2 HIS A 92 7555 1.38 REMARK 500 NE2 HIS A 92 CE1 HIS A 92 7555 1.15 REMARK 500 NE2 HIS A 92 NE2 HIS A 92 7555 0.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 89 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 VAL A 261 CB - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 22.90 -75.96 REMARK 500 ARG A 25 -31.11 -34.99 REMARK 500 VAL A 44 130.77 179.67 REMARK 500 ARG A 85 91.23 77.15 REMARK 500 PRO A 88 115.28 -18.82 REMARK 500 PRO A 89 -26.25 -26.37 REMARK 500 PRO A 97 78.09 -67.70 REMARK 500 ASP A 110 51.09 -113.84 REMARK 500 TRP A 124 145.48 -177.42 REMARK 500 LEU A 128 15.36 -148.74 REMARK 500 SER A 131 -33.50 -31.85 REMARK 500 HIS A 139 -11.15 -146.04 REMARK 500 HIS A 141 31.97 -99.17 REMARK 500 HIS A 148 -123.90 -112.69 REMARK 500 SER A 169 38.29 -82.59 REMARK 500 SER A 170 -45.53 61.48 REMARK 500 LEU A 174 -82.25 -57.73 REMARK 500 SER A 184 -72.09 -83.06 REMARK 500 ASP A 200 -125.05 -62.83 REMARK 500 VAL A 201 94.74 -28.56 REMARK 500 SER A 202 85.25 -18.18 REMARK 500 GLU A 203 60.59 -117.42 REMARK 500 GLU A 229 -82.97 -58.82 REMARK 500 ARG A 230 -34.19 -19.44 REMARK 500 ASN A 233 -2.22 73.11 REMARK 500 ASP A 243 -123.02 -127.04 REMARK 500 ARG A 247 -7.63 -55.27 REMARK 500 VAL A 250 -98.01 -52.70 REMARK 500 GLN A 251 -96.53 -5.08 REMARK 500 ARG A 252 12.75 -49.23 REMARK 500 ARG A 286 51.78 -106.58 REMARK 500 THR A 287 149.11 -175.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 200 VAL A 201 148.89 REMARK 500 VAL A 201 SER A 202 67.58 REMARK 500 SER A 202 GLU A 203 114.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ARG A 252 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 ATP A 1295 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A1297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A1298 DBREF 2JAX A 1 297 UNP O06189 O06189_MYCTU 1 297 DBREF 2JAX A 298 305 PDB 2JAX 2JAX 298 305 SEQRES 1 A 305 MSE SER SER GLY ASN SER SER LEU GLY ILE ILE VAL GLY SEQRES 2 A 305 ILE ASP ASP SER PRO ALA ALA GLN VAL ALA VAL ARG TRP SEQRES 3 A 305 ALA ALA ARG ASP ALA GLU LEU ARG LYS ILE PRO LEU THR SEQRES 4 A 305 LEU VAL HIS ALA VAL SER PRO GLU VAL ALA THR TRP LEU SEQRES 5 A 305 GLU VAL PRO LEU PRO PRO GLY VAL LEU ARG TRP GLN GLN SEQRES 6 A 305 ASP HIS GLY ARG HIS LEU ILE ASP ASP ALA LEU LYS VAL SEQRES 7 A 305 VAL GLU GLN ALA SER LEU ARG ALA GLY PRO PRO THR VAL SEQRES 8 A 305 HIS SER GLU ILE VAL PRO ALA ALA ALA VAL PRO THR LEU SEQRES 9 A 305 VAL ASP MSE SER LYS ASP ALA VAL LEU MSE VAL VAL GLY SEQRES 10 A 305 CYS LEU GLY SER GLY ARG TRP PRO GLY ARG LEU LEU GLY SEQRES 11 A 305 SER VAL SER SER GLY LEU LEU ARG HIS ALA HIS CYS PRO SEQRES 12 A 305 VAL VAL ILE ILE HIS ASP GLU ASP SER VAL MSE PRO HIS SEQRES 13 A 305 PRO GLN GLN ALA PRO VAL LEU VAL GLY VAL ASP GLY SER SEQRES 14 A 305 SER ALA SER GLU LEU ALA THR ALA ILE ALA PHE ASP GLU SEQRES 15 A 305 ALA SER ARG ARG ASN VAL ASP LEU VAL ALA LEU HIS ALA SEQRES 16 A 305 TRP SER ASP VAL ASP VAL SER GLU TRP PRO GLY ILE ASP SEQRES 17 A 305 TRP PRO ALA THR GLN SER MSE ALA GLU GLN VAL LEU ALA SEQRES 18 A 305 GLU ARG LEU ALA GLY TRP GLN GLU ARG TYR PRO ASN VAL SEQRES 19 A 305 ALA ILE THR ARG VAL VAL VAL ARG ASP GLN PRO ALA ARG SEQRES 20 A 305 GLN LEU VAL GLN ARG SER GLU GLU ALA GLN LEU VAL VAL SEQRES 21 A 305 VAL GLY SER ARG GLY ARG GLY GLY TYR ALA GLY MSE LEU SEQRES 22 A 305 VAL GLY SER VAL GLY GLU THR VAL ALA GLN LEU ALA ARG SEQRES 23 A 305 THR PRO VAL ILE VAL ALA ARG GLU SER LEU THR LEU GLU SEQRES 24 A 305 HIS HIS HIS HIS HIS HIS MODRES 2JAX MSE A 107 MET SELENOMETHIONINE MODRES 2JAX MSE A 114 MET SELENOMETHIONINE MODRES 2JAX MSE A 215 MET SELENOMETHIONINE MODRES 2JAX MSE A 272 MET SELENOMETHIONINE HET MSE A 107 8 HET MSE A 114 8 HET MSE A 215 8 HET MSE A 272 8 HET ATP A1295 31 HET ATP A1296 31 HET UNX A1297 1 HET UNX A1298 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION HETNAM MSE SELENOMETHIONINE FORMUL 2 ATP 2(C10 H16 N5 O13 P3) FORMUL 3 UNX 2(X) FORMUL 4 MSE 4(C5 H11 N O2 SE) HELIX 1 1 SER A 17 ARG A 34 1 18 HELIX 2 2 ARG A 62 SER A 83 1 22 HELIX 3 3 ALA A 99 LYS A 109 1 11 HELIX 4 4 GLY A 130 ALA A 140 1 11 HELIX 5 5 ALA A 171 ARG A 186 1 16 HELIX 6 6 ASP A 208 LEU A 224 1 17 HELIX 7 7 LEU A 224 GLU A 229 1 6 HELIX 8 8 PRO A 245 VAL A 250 1 6 HELIX 9 9 GLN A 251 GLU A 254 5 4 HELIX 10 10 GLY A 275 ALA A 285 1 11 SHEET 1 AA 8 ILE A 10 VAL A 12 0 SHEET 2 AA 8 LEU A 113 GLY A 117 1 O LEU A 113 N ILE A 11 SHEET 3 AA 8 VAL A 144 ILE A 147 1 O VAL A 145 N VAL A 116 SHEET 4 AA 8 VAL A 289 VAL A 291 -1 O VAL A 289 N ILE A 146 SHEET 5 AA 8 LEU A 258 VAL A 260 1 O VAL A 259 N ILE A 290 SHEET 6 AA 8 VAL A 162 GLY A 165 1 O LEU A 163 N VAL A 260 SHEET 7 AA 8 LEU A 190 ALA A 195 1 O VAL A 191 N VAL A 164 SHEET 8 AA 8 ILE A 236 VAL A 241 1 O THR A 237 N ALA A 192 SHEET 1 AB 2 VAL A 41 ALA A 43 0 SHEET 2 AB 2 GLU A 94 VAL A 96 1 O GLU A 94 N HIS A 42 LINK C ASP A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N SER A 108 1555 1555 1.33 LINK C LEU A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N VAL A 115 1555 1555 1.32 LINK C SER A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N ALA A 216 1555 1555 1.32 LINK NH1 ARG A 264 CE MSE A 272 1555 1555 1.52 LINK C GLY A 271 N MSE A 272 1555 1555 1.32 LINK C MSE A 272 N LEU A 273 1555 1555 1.33 LINK OG SER A 276 O3G ATP A1295 1555 1555 1.64 LINK O1A ATP A1295 UNK UNX A1297 1555 1555 1.41 SITE 1 AC1 20 SER A 131 GLY A 165 VAL A 166 ASP A 167 SITE 2 AC1 20 LEU A 193 ALA A 195 ASP A 198 PRO A 245 SITE 3 AC1 20 VAL A 261 GLY A 262 ARG A 264 GLY A 265 SITE 4 AC1 20 ARG A 266 GLY A 267 GLY A 268 MSE A 272 SITE 5 AC1 20 GLY A 275 SER A 276 VAL A 277 UNX A1297 SITE 1 AC2 20 GLY A 13 ILE A 14 ASP A 15 ALA A 20 SITE 2 AC2 20 VAL A 41 HIS A 42 ALA A 43 ALA A 100 SITE 3 AC2 20 VAL A 116 GLY A 117 GLY A 120 SER A 121 SITE 4 AC2 20 GLY A 122 ARG A 123 ARG A 127 GLY A 130 SITE 5 AC2 20 SER A 131 VAL A 132 SER A 133 UNX A1298 SITE 1 AC3 3 ASP A 198 ARG A 266 ATP A1295 SITE 1 AC4 1 ATP A1296 CRYST1 102.134 102.134 158.068 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009791 0.005653 0.000000 0.00000 SCALE2 0.000000 0.011306 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006326 0.00000