HEADER UNKNOWN FUNCTION 04-DEC-06 2JB7 TITLE PAE2307 WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PAE2307; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 3 ORGANISM_TAXID: 13773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS HYPOTHETICAL PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.RAJASEKARAN,J.S.LOTT,J.M.JOHNSTON REVDAT 3 13-DEC-23 2JB7 1 REMARK REVDAT 2 24-FEB-09 2JB7 1 VERSN REVDAT 1 05-AUG-08 2JB7 0 JRNL AUTH K.RAJASEKARAN,J.S.LOTT,J.M.JOHNSTON,E.N.BAKER JRNL TITL PAE2307 A PHOSPHOTRANSFERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0021 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 61634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6864 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4492 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 506 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.668 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4042 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2762 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5500 ; 1.739 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6763 ; 1.061 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 6.320 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;33.988 ;23.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 692 ;12.309 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.186 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 640 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4328 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 780 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 777 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3146 ; 0.215 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1973 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2194 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 261 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.081 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.343 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3143 ; 1.128 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3973 ; 1.385 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1827 ; 2.591 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1526 ; 3.563 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JB7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1290030628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.65 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68521 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 37.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 1WVQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PAE2307(6MG/ML) WITH 0.5MM AMP IN 21% REMARK 280 PEG4000, 200MM SODIUM ACETATE TRIHYDRATE AND 100 MM TRIS HCL; PH REMARK 280 8.7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 60.06650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 60.06650 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.12550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.06650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.06275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.06650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.18825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.06650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 117.18825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.06650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.06275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 60.06650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 60.06650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.12550 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 60.06650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 60.06650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 78.12550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 60.06650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 117.18825 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 60.06650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 39.06275 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.06650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 39.06275 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 60.06650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 117.18825 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 60.06650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 60.06650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 78.12550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 34680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 120.13300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 MET B 4 REMARK 465 MET C 4 REMARK 465 SER C 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 SER B 5 O REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 LYS C 7 CG CD CE NZ REMARK 470 GLN C 17 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3P AMP B 1168 O HOH B 2103 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 2069 O HOH C 2069 10655 1.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 155 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 -151.19 -137.23 REMARK 500 PHE A 28 138.31 78.69 REMARK 500 VAL A 162 -62.46 -98.09 REMARK 500 ALA B 26 -153.28 -136.01 REMARK 500 PHE B 28 139.86 76.77 REMARK 500 VAL B 162 -63.89 -95.05 REMARK 500 ALA C 26 -154.14 -142.21 REMARK 500 PHE C 28 137.89 80.68 REMARK 500 VAL C 162 -70.68 -93.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C1168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A1168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B1168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A1169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE C1169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B1169 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B1170 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GL0 RELATED DB: PDB REMARK 900 STRUCTURE OF PAE2307 IN COMPLEX WITH ADENOSINE REMARK 900 RELATED ID: 1WVQ RELATED DB: PDB REMARK 900 STRUCTURE OF CONSERVED HYPOTHETICAL PROTEIN PAE2307 FROMPYROBACULUM REMARK 900 AEROPHILUM DBREF 2JB7 A 4 167 UNP Q8ZVF7 Q8ZVF7_PYRAE 1 164 DBREF 2JB7 B 4 167 UNP Q8ZVF7 Q8ZVF7_PYRAE 1 164 DBREF 2JB7 C 4 167 UNP Q8ZVF7 Q8ZVF7_PYRAE 1 164 SEQRES 1 A 164 MET SER ILE LYS PHE GLU LEU ILE ASP VAL PRO ILE PRO SEQRES 2 A 164 GLN GLY THR ASN VAL ILE ILE GLY GLN ALA HIS PHE ILE SEQRES 3 A 164 LYS THR VAL GLU ASP LEU TYR GLU ALA LEU VAL THR SER SEQRES 4 A 164 VAL PRO GLY VAL LYS PHE GLY ILE ALA PHE CYS GLU ALA SEQRES 5 A 164 SER GLY LYS ARG LEU VAL ARG HIS GLU ALA ASN ASP GLU SEQRES 6 A 164 GLU LEU ARG ASN LEU ALA ILE ASP LEU CYS LYS LYS ILE SEQRES 7 A 164 ALA ALA GLY HIS VAL PHE VAL ILE TYR ILE ARG ASN ALA SEQRES 8 A 164 TRP PRO ILE ASN VAL LEU ASN ALA ILE LYS ASN VAL PRO SEQRES 9 A 164 GLU VAL VAL ARG ILE PHE ALA ALA THR ALA ASN PRO LEU SEQRES 10 A 164 LYS VAL ILE VAL ALA GLU VAL GLU PRO GLU ARG ARG GLY SEQRES 11 A 164 VAL VAL GLY VAL VAL ASP GLY HIS SER PRO LEU GLY VAL SEQRES 12 A 164 GLU THR GLU LYS ASP ARG GLU GLU ARG LYS LYS PHE LEU SEQRES 13 A 164 ARG GLU VAL VAL LYS TYR LYS LEU SEQRES 1 B 164 MET SER ILE LYS PHE GLU LEU ILE ASP VAL PRO ILE PRO SEQRES 2 B 164 GLN GLY THR ASN VAL ILE ILE GLY GLN ALA HIS PHE ILE SEQRES 3 B 164 LYS THR VAL GLU ASP LEU TYR GLU ALA LEU VAL THR SER SEQRES 4 B 164 VAL PRO GLY VAL LYS PHE GLY ILE ALA PHE CYS GLU ALA SEQRES 5 B 164 SER GLY LYS ARG LEU VAL ARG HIS GLU ALA ASN ASP GLU SEQRES 6 B 164 GLU LEU ARG ASN LEU ALA ILE ASP LEU CYS LYS LYS ILE SEQRES 7 B 164 ALA ALA GLY HIS VAL PHE VAL ILE TYR ILE ARG ASN ALA SEQRES 8 B 164 TRP PRO ILE ASN VAL LEU ASN ALA ILE LYS ASN VAL PRO SEQRES 9 B 164 GLU VAL VAL ARG ILE PHE ALA ALA THR ALA ASN PRO LEU SEQRES 10 B 164 LYS VAL ILE VAL ALA GLU VAL GLU PRO GLU ARG ARG GLY SEQRES 11 B 164 VAL VAL GLY VAL VAL ASP GLY HIS SER PRO LEU GLY VAL SEQRES 12 B 164 GLU THR GLU LYS ASP ARG GLU GLU ARG LYS LYS PHE LEU SEQRES 13 B 164 ARG GLU VAL VAL LYS TYR LYS LEU SEQRES 1 C 164 MET SER ILE LYS PHE GLU LEU ILE ASP VAL PRO ILE PRO SEQRES 2 C 164 GLN GLY THR ASN VAL ILE ILE GLY GLN ALA HIS PHE ILE SEQRES 3 C 164 LYS THR VAL GLU ASP LEU TYR GLU ALA LEU VAL THR SER SEQRES 4 C 164 VAL PRO GLY VAL LYS PHE GLY ILE ALA PHE CYS GLU ALA SEQRES 5 C 164 SER GLY LYS ARG LEU VAL ARG HIS GLU ALA ASN ASP GLU SEQRES 6 C 164 GLU LEU ARG ASN LEU ALA ILE ASP LEU CYS LYS LYS ILE SEQRES 7 C 164 ALA ALA GLY HIS VAL PHE VAL ILE TYR ILE ARG ASN ALA SEQRES 8 C 164 TRP PRO ILE ASN VAL LEU ASN ALA ILE LYS ASN VAL PRO SEQRES 9 C 164 GLU VAL VAL ARG ILE PHE ALA ALA THR ALA ASN PRO LEU SEQRES 10 C 164 LYS VAL ILE VAL ALA GLU VAL GLU PRO GLU ARG ARG GLY SEQRES 11 C 164 VAL VAL GLY VAL VAL ASP GLY HIS SER PRO LEU GLY VAL SEQRES 12 C 164 GLU THR GLU LYS ASP ARG GLU GLU ARG LYS LYS PHE LEU SEQRES 13 C 164 ARG GLU VAL VAL LYS TYR LYS LEU HET AMP A1168 29 HET EPE A1169 15 HET AMP B1168 29 HET ACT B1169 4 HET EPE B1170 15 HET AMP C1168 29 HET EPE C1169 15 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM ACT ACETATE ION HETSYN EPE HEPES FORMUL 4 AMP 3(C10 H14 N5 O7 P) FORMUL 5 EPE 3(C8 H18 N2 O4 S) FORMUL 7 ACT C2 H3 O2 1- FORMUL 11 HOH *312(H2 O) HELIX 1 1 LYS A 30 THR A 41 1 12 HELIX 2 2 ASP A 67 ALA A 82 1 16 HELIX 3 3 TRP A 95 ASN A 105 1 11 HELIX 4 4 THR A 148 VAL A 162 1 15 HELIX 5 5 LYS B 30 THR B 41 1 12 HELIX 6 6 ASP B 67 ALA B 82 1 16 HELIX 7 7 TRP B 95 ASN B 105 1 11 HELIX 8 8 THR B 148 VAL B 162 1 15 HELIX 9 9 LYS C 30 THR C 41 1 12 HELIX 10 10 ASP C 67 ALA C 82 1 16 HELIX 11 11 TRP C 95 ASN C 105 1 11 HELIX 12 12 THR C 148 VAL C 162 1 15 SHEET 1 AA 3 LYS A 7 VAL A 13 0 SHEET 2 AA 3 LEU A 120 GLU A 128 -1 O LEU A 120 N VAL A 13 SHEET 3 AA 3 ARG A 131 ASP A 139 -1 O ARG A 131 N VAL A 127 SHEET 1 AB 6 ARG A 111 THR A 116 0 SHEET 2 AB 6 ASN A 20 GLN A 25 -1 O VAL A 21 N THR A 116 SHEET 3 AB 6 VAL A 86 ARG A 92 -1 O PHE A 87 N GLY A 24 SHEET 4 AB 6 LYS A 47 CYS A 53 -1 O LYS A 47 N ARG A 92 SHEET 5 AB 6 LEU A 60 ALA A 65 -1 O ARG A 62 N PHE A 52 SHEET 6 AB 6 GLY B 145 VAL B 146 1 O GLY B 145 N VAL A 61 SHEET 1 AC 6 GLY A 145 VAL A 146 0 SHEET 2 AC 6 LEU C 60 ALA C 65 1 N VAL C 61 O GLY A 145 SHEET 3 AC 6 LYS C 47 CYS C 53 -1 O ILE C 50 N GLU C 64 SHEET 4 AC 6 VAL C 86 ARG C 92 -1 O VAL C 86 N CYS C 53 SHEET 5 AC 6 ASN C 20 GLN C 25 -1 O ASN C 20 N ILE C 91 SHEET 6 AC 6 ARG C 111 THR C 116 -1 O ARG C 111 N GLN C 25 SHEET 1 BA 3 LYS B 7 ASP B 12 0 SHEET 2 BA 3 LEU B 120 GLU B 128 -1 O VAL B 122 N ILE B 11 SHEET 3 BA 3 ARG B 131 ASP B 139 -1 O ARG B 131 N VAL B 127 SHEET 1 BB 6 ARG B 111 THR B 116 0 SHEET 2 BB 6 ASN B 20 GLN B 25 -1 O VAL B 21 N THR B 116 SHEET 3 BB 6 VAL B 86 ARG B 92 -1 O PHE B 87 N GLY B 24 SHEET 4 BB 6 LYS B 47 CYS B 53 -1 O LYS B 47 N ARG B 92 SHEET 5 BB 6 LEU B 60 ALA B 65 -1 O ARG B 62 N PHE B 52 SHEET 6 BB 6 GLY C 145 VAL C 146 1 O GLY C 145 N VAL B 61 SHEET 1 CA 3 LYS C 7 VAL C 13 0 SHEET 2 CA 3 LEU C 120 GLU C 128 -1 O LEU C 120 N VAL C 13 SHEET 3 CA 3 ARG C 131 ASP C 139 -1 O ARG C 131 N VAL C 127 SITE 1 AC1 16 HIS B 27 PHE B 28 ALA B 55 SER B 56 SITE 2 AC1 16 HIS B 85 HOH B2020 ASN C 20 TRP C 95 SITE 3 AC1 16 THR C 116 ALA C 117 ASN C 118 VAL C 163 SITE 4 AC1 16 TYR C 165 HOH C2103 HOH C2104 HOH C2105 SITE 1 AC2 15 ASN A 20 TRP A 95 ALA A 117 ASN A 118 SITE 2 AC2 15 VAL A 163 TYR A 165 HOH A2095 HOH A2096 SITE 3 AC2 15 HIS C 27 PHE C 28 ALA C 55 SER C 56 SITE 4 AC2 15 HIS C 85 HOH C2019 HOH C2021 SITE 1 AC3 19 PHE A 28 GLU A 54 ALA A 55 SER A 56 SITE 2 AC3 19 HIS A 85 HOH A2016 ASN B 20 TRP B 95 SITE 3 AC3 19 ALA B 117 ASN B 118 VAL B 163 TYR B 165 SITE 4 AC3 19 HOH B2101 HOH B2102 HOH B2103 HOH B2104 SITE 5 AC3 19 HOH B2105 HOH B2107 HOH B2108 SITE 1 AC4 6 GLN A 17 GLY A 18 ASN A 93 ALA A 94 SITE 2 AC4 6 TRP A 95 PRO B 44 SITE 1 AC5 7 GLY C 18 PRO C 44 ASN C 93 ALA C 94 SITE 2 AC5 7 TRP C 95 HOH C2012 HOH C2066 SITE 1 AC6 5 ARG A 111 ARG B 111 HOH B2109 ARG C 111 SITE 2 AC6 5 ILE C 112 SITE 1 AC7 7 PRO A 44 GLY B 18 ASN B 93 ALA B 94 SITE 2 AC7 7 TRP B 95 HOH B2013 HOH B2016 CRYST1 120.133 120.133 156.251 90.00 90.00 90.00 I 41 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006400 0.00000