HEADER APOPTOSIS 14-DEC-06 2JBX TITLE CRYSTAL STRUCTURE OF THE MYXOMA VIRUS ANTI-APOPTOTIC PROTEIN M11L COMPND MOL_ID: 1; COMPND 2 MOLECULE: M11L PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-132; COMPND 5 SYNONYM: M11L, APOPTOSIS REGULATOR M11L; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOMA VIRUS; SOURCE 3 ORGANISM_TAXID: 10273; SOURCE 4 STRAIN: LAUSANNE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYZ; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PDUET KEYWDS APOPTOSIS, BCL-2 FAMILY, MYXOMA VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR M.KVANSAKUL,M.F.VAN DELFT,E.F.LEE,J.M.GULBIS,W.D.FAIRLIE,D.C.S.HUANG, AUTHOR 2 P.M.COLMAN REVDAT 4 01-MAY-24 2JBX 1 LINK REVDAT 3 24-FEB-09 2JBX 1 VERSN REVDAT 2 20-NOV-07 2JBX 1 JRNL REVDAT 1 27-MAR-07 2JBX 0 JRNL AUTH M.KVANSAKUL,M.F.VAN DELFT,E.F.LEE,J.M.GULBIS,W.D.FAIRLIE, JRNL AUTH 2 D.C.S.HUANG,P.M.COLMAN JRNL TITL A STRUCTURAL VIRAL MIMIC OF PROSURVIVAL BCL-2: A PIVOTAL JRNL TITL 2 ROLE FOR SEQUESTERING PROAPOPTOTIC BAX AND BAK. JRNL REF MOL.CELL V. 25 933 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17386268 JRNL DOI 10.1016/J.MOLCEL.2007.02.004 REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 6895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 373 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 457 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2059 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05000 REMARK 3 B22 (A**2) : -0.70000 REMARK 3 B33 (A**2) : 2.46000 REMARK 3 B12 (A**2) : 0.39000 REMARK 3 B13 (A**2) : 0.38000 REMARK 3 B23 (A**2) : -1.30000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.445 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.387 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.914 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.839 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2075 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2810 ; 1.870 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 7.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;36.220 ;26.374 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 392 ;23.344 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;26.873 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1493 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1253 ; 0.311 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1474 ; 0.328 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 118 ; 0.205 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.283 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.169 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1331 ; 1.491 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2113 ; 2.302 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 833 ; 3.798 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 696 ; 5.538 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1290030814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : AXCO CAPILLARY OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7483 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.730 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: M11L BAK COMPLEX REMARK 200 REMARK 200 REMARK: PDB ENTRY FOR M11L BAK COMPLEX TO BE SUBMITTED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 10 MM KSCN, REMARK 280 100 MM HEPES PH 7.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 GLN A -2 REMARK 465 ASP A -1 REMARK 465 THR A 132 REMARK 465 MSE B -12 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 SER B -3 REMARK 465 GLN B -2 REMARK 465 ASP B -1 REMARK 465 PRO B 0 REMARK 465 ASN B 130 REMARK 465 THR B 131 REMARK 465 THR B 132 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 131 CA C O CB OG1 CG2 REMARK 470 TYR B 129 CA C O CB CG CD1 CD2 REMARK 470 TYR B 129 CE1 CE2 CZ OH REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 43 CD CE NZ REMARK 480 ILE A 51 CG2 REMARK 480 ASP A 74 OD1 REMARK 480 ILE A 97 CD1 REMARK 480 LYS A 125 CD CE NZ REMARK 480 LYS A 126 CD CE NZ REMARK 480 ARG B 4 NH1 NH2 REMARK 480 LYS B 92 NZ REMARK 480 LYS B 128 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 47 CG2 ILE A 51 1.99 REMARK 500 CB CYS A 33 O HOH A 2040 2.08 REMARK 500 OH TYR B 10 O HOH B 2005 2.15 REMARK 500 OE2 GLU A 116 O HOH A 2038 2.18 REMARK 500 OH TYR B 12 O HOH B 2006 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 126 CG LYS A 126 CD 0.324 REMARK 500 ARG B 4 CZ ARG B 4 NH1 0.885 REMARK 500 ARG B 4 CZ ARG B 4 NH2 1.026 REMARK 500 LYS B 92 CE LYS B 92 NZ -0.452 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 51 CG1 - CB - CG2 ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 74 OD1 - CG - OD2 ANGL. DEV. = 12.0 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = -13.3 DEGREES REMARK 500 LEU A 81 CA - CB - CG ANGL. DEV. = -14.8 DEGREES REMARK 500 LYS A 126 CB - CG - CD ANGL. DEV. = -40.5 DEGREES REMARK 500 LYS A 126 CG - CD - CE ANGL. DEV. = -27.0 DEGREES REMARK 500 ARG B 4 NH1 - CZ - NH2 ANGL. DEV. = -59.1 DEGREES REMARK 500 ARG B 4 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 4 NE - CZ - NH2 ANGL. DEV. = 5.4 DEGREES REMARK 500 LYS B 92 CD - CE - NZ ANGL. DEV. = 19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 22 3.83 -66.70 REMARK 500 ILE A 56 -72.96 -63.21 REMARK 500 SER A 58 -28.22 84.65 REMARK 500 ALA A 71 31.66 -90.06 REMARK 500 ALA A 75 -140.84 47.60 REMARK 500 SER A 76 154.58 172.64 REMARK 500 PRO A 77 -29.19 -34.57 REMARK 500 GLN A 98 140.37 170.36 REMARK 500 SER A 106 -67.56 -20.13 REMARK 500 GLU A 115 60.45 70.07 REMARK 500 LYS A 126 28.47 -142.83 REMARK 500 TYR A 129 93.76 14.01 REMARK 500 ASN A 130 -178.38 -48.96 REMARK 500 MSE B 2 -86.85 -135.41 REMARK 500 SER B 3 -111.01 44.87 REMARK 500 ARG B 4 -46.77 162.08 REMARK 500 ASP B 15 72.55 53.17 REMARK 500 ILE B 18 164.20 -40.04 REMARK 500 THR B 19 27.45 49.52 REMARK 500 GLU B 20 -11.25 -142.58 REMARK 500 ASN B 32 -73.92 -58.70 REMARK 500 SER B 58 -16.17 68.34 REMARK 500 LEU B 72 -101.69 -40.61 REMARK 500 ARG B 73 -137.52 45.64 REMARK 500 GLN B 98 119.50 -179.44 REMARK 500 HIS B 99 126.21 -36.16 REMARK 500 LYS B 126 -154.98 -120.52 REMARK 500 LYS B 128 -32.23 -142.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 4 0.35 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2011 DISTANCE = 7.10 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JBY RELATED DB: PDB REMARK 900 A VIRAL PROTEIN UNEXPECTEDLY MIMICS THE STRUCTURE AND FUNCTION OF REMARK 900 PRO-SURVIVAL BCL-2 DBREF 2JBX A -12 0 PDB 2JBX 2JBX -12 0 DBREF 2JBX A 1 132 UNP Q85295 Q85295_9POXV 1 132 DBREF 2JBX B -12 0 PDB 2JBX 2JBX -12 0 DBREF 2JBX B 1 132 UNP Q85295 Q85295_9POXV 1 132 SEQRES 1 A 145 MSE GLY SER HIS HIS HIS HIS HIS HIS SER GLN ASP PRO SEQRES 2 A 145 MSE MSE SER ARG LEU LYS THR ALA VAL TYR ASP TYR LEU SEQRES 3 A 145 ASN ASP VAL ASP ILE THR GLU CYS THR GLU MSE ASP LEU SEQRES 4 A 145 LEU CYS GLN LEU SER ASN CYS CYS ASP PHE ILE ASN GLU SEQRES 5 A 145 THR TYR ALA LYS ASN TYR ASP THR LEU TYR ASP ILE MSE SEQRES 6 A 145 GLU ARG ASP ILE LEU SER TYR ASN ILE VAL ASN ILE LYS SEQRES 7 A 145 ASN THR LEU THR PHE ALA LEU ARG ASP ALA SER PRO SER SEQRES 8 A 145 VAL LYS LEU ALA THR LEU THR LEU LEU ALA SER VAL ILE SEQRES 9 A 145 LYS LYS LEU ASN LYS ILE GLN HIS THR ASP ALA ALA MSE SEQRES 10 A 145 PHE SER GLU VAL ILE ASP GLY ILE VAL ALA GLU GLU GLN SEQRES 11 A 145 GLN VAL ILE GLY PHE ILE GLN LYS LYS CYS LYS TYR ASN SEQRES 12 A 145 THR THR SEQRES 1 B 145 MSE GLY SER HIS HIS HIS HIS HIS HIS SER GLN ASP PRO SEQRES 2 B 145 MSE MSE SER ARG LEU LYS THR ALA VAL TYR ASP TYR LEU SEQRES 3 B 145 ASN ASP VAL ASP ILE THR GLU CYS THR GLU MSE ASP LEU SEQRES 4 B 145 LEU CYS GLN LEU SER ASN CYS CYS ASP PHE ILE ASN GLU SEQRES 5 B 145 THR TYR ALA LYS ASN TYR ASP THR LEU TYR ASP ILE MSE SEQRES 6 B 145 GLU ARG ASP ILE LEU SER TYR ASN ILE VAL ASN ILE LYS SEQRES 7 B 145 ASN THR LEU THR PHE ALA LEU ARG ASP ALA SER PRO SER SEQRES 8 B 145 VAL LYS LEU ALA THR LEU THR LEU LEU ALA SER VAL ILE SEQRES 9 B 145 LYS LYS LEU ASN LYS ILE GLN HIS THR ASP ALA ALA MSE SEQRES 10 B 145 PHE SER GLU VAL ILE ASP GLY ILE VAL ALA GLU GLU GLN SEQRES 11 B 145 GLN VAL ILE GLY PHE ILE GLN LYS LYS CYS LYS TYR ASN SEQRES 12 B 145 THR THR MODRES 2JBX MSE A 1 MET SELENOMETHIONINE MODRES 2JBX MSE A 2 MET SELENOMETHIONINE MODRES 2JBX MSE A 24 MET SELENOMETHIONINE MODRES 2JBX MSE A 52 MET SELENOMETHIONINE MODRES 2JBX MSE A 104 MET SELENOMETHIONINE MODRES 2JBX MSE B 1 MET SELENOMETHIONINE MODRES 2JBX MSE B 2 MET SELENOMETHIONINE MODRES 2JBX MSE B 24 MET SELENOMETHIONINE MODRES 2JBX MSE B 52 MET SELENOMETHIONINE MODRES 2JBX MSE B 104 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 2 8 HET MSE A 24 8 HET MSE A 52 8 HET MSE A 104 8 HET MSE B 1 8 HET MSE B 2 8 HET MSE B 24 8 HET MSE B 52 8 HET MSE B 104 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 HOH *67(H2 O) HELIX 1 1 SER A 3 ASP A 15 1 13 HELIX 2 2 GLU A 23 TYR A 41 1 19 HELIX 3 3 TYR A 41 LEU A 57 1 17 HELIX 4 4 ASN A 60 PHE A 70 1 11 HELIX 5 5 SER A 76 GLN A 98 1 23 HELIX 6 6 ASP A 101 MSE A 104 5 4 HELIX 7 7 PHE A 105 ALA A 114 1 10 HELIX 8 8 GLU A 115 LYS A 126 1 12 HELIX 9 9 ARG B 4 ASP B 15 1 12 HELIX 10 10 GLU B 23 TYR B 41 1 19 HELIX 11 11 TYR B 41 LEU B 57 1 17 HELIX 12 12 ASN B 60 LEU B 72 1 13 HELIX 13 13 SER B 76 LYS B 96 1 21 HELIX 14 14 ASP B 101 MSE B 104 5 4 HELIX 15 15 PHE B 105 ALA B 114 1 10 HELIX 16 16 GLU B 115 LYS B 126 1 12 SSBOND 1 CYS A 33 CYS A 127 1555 1555 2.01 SSBOND 2 CYS B 33 CYS B 127 1555 1555 1.97 LINK C PRO A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N MSE A 2 1555 1555 1.33 LINK C MSE A 2 N SER A 3 1555 1555 1.33 LINK C GLU A 23 N MSE A 24 1555 1555 1.33 LINK C MSE A 24 N ASP A 25 1555 1555 1.33 LINK C ILE A 51 N MSE A 52 1555 1555 1.34 LINK C MSE A 52 N GLU A 53 1555 1555 1.32 LINK C ALA A 103 N MSE A 104 1555 1555 1.34 LINK C MSE A 104 N PHE A 105 1555 1555 1.33 LINK C MSE B 1 N MSE B 2 1555 1555 1.33 LINK C MSE B 2 N SER B 3 1555 1555 1.33 LINK C GLU B 23 N MSE B 24 1555 1555 1.33 LINK C MSE B 24 N ASP B 25 1555 1555 1.31 LINK C ILE B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N GLU B 53 1555 1555 1.33 LINK C ALA B 103 N MSE B 104 1555 1555 1.33 LINK C MSE B 104 N PHE B 105 1555 1555 1.33 CRYST1 39.876 39.398 49.222 71.79 90.09 81.66 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025078 -0.003676 0.001266 0.00000 SCALE2 0.000000 0.025653 -0.008546 0.00000 SCALE3 0.000000 0.000000 0.021414 0.00000