data_2JBY # _entry.id 2JBY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.294 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JBY PDBE EBI-30815 WWPDB D_1290030815 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2JBX _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF THE MYXOMA VIRUS ANTI- APOPTOTIC PROTEIN M11L' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2JBY _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-12-14 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kvansakul, M.' 1 ? 'Van Delft, M.F.' 2 ? 'Lee, E.F.' 3 ? 'Gulbis, J.M.' 4 ? 'Fairlie, W.D.' 5 ? 'Huang, D.C.S.' 6 ? 'Colman, P.M.' 7 ? # _citation.id primary _citation.title 'A structural viral mimic of prosurvival Bcl-2: a pivotal role for sequestering proapoptotic Bax and Bak.' _citation.journal_abbrev 'Mol. Cell' _citation.journal_volume 25 _citation.page_first 933 _citation.page_last 942 _citation.year 2007 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17386268 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2007.02.004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kvansakul, M.' 1 primary 'van Delft, M.F.' 2 primary 'Lee, E.F.' 3 primary 'Gulbis, J.M.' 4 primary 'Fairlie, W.D.' 5 primary 'Huang, D.C.' 6 primary 'Colman, P.M.' 7 # _cell.entry_id 2JBY _cell.length_a 69.187 _cell.length_b 69.187 _cell.length_c 120.601 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JBY _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'M11L PROTEIN' 16599.957 1 ? ? 'RESIDUES 1-132' ? 2 polymer syn 'BCL-2 HOMOLOGOUS ANTAGONIST/KILLER 2' 2882.151 1 ? ? 'BH3 DOMAIN, RESIDUES 67-92' ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 58 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'APOPTOSIS REGULATOR M11L, M11L' 2 'APOPTOSIS REGULATOR BAK-2, BAK' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGSHHHHHHSQDPMMSRLKTAVYDYLNDVDITECTEMDLLCQLSNCCDFINETYAKNYDTLYDIMERDILSYNIVNIKNT LTFALRDASPSVKLATLTLLASVIKKLNKIQHTDAAMFSEVIDGIVAEEQQVIGFIQKKCKYNTT ; ;MGSHHHHHHSQDPMMSRLKTAVYDYLNDVDITECTEMDLLCQLSNCCDFINETYAKNYDTLYDIMERDILSYNIVNIKNT LTFALRDASPSVKLATLTLLASVIKKLNKIQHTDAAMFSEVIDGIVAEEQQVIGFIQKKCKYNTT ; A ? 2 'polypeptide(L)' no no PSSTMGQVGRQLAIIGDDINRRYDSE PSSTMGQVGRQLAIIGDDINRRYDSE B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 SER n 1 11 GLN n 1 12 ASP n 1 13 PRO n 1 14 MET n 1 15 MET n 1 16 SER n 1 17 ARG n 1 18 LEU n 1 19 LYS n 1 20 THR n 1 21 ALA n 1 22 VAL n 1 23 TYR n 1 24 ASP n 1 25 TYR n 1 26 LEU n 1 27 ASN n 1 28 ASP n 1 29 VAL n 1 30 ASP n 1 31 ILE n 1 32 THR n 1 33 GLU n 1 34 CYS n 1 35 THR n 1 36 GLU n 1 37 MET n 1 38 ASP n 1 39 LEU n 1 40 LEU n 1 41 CYS n 1 42 GLN n 1 43 LEU n 1 44 SER n 1 45 ASN n 1 46 CYS n 1 47 CYS n 1 48 ASP n 1 49 PHE n 1 50 ILE n 1 51 ASN n 1 52 GLU n 1 53 THR n 1 54 TYR n 1 55 ALA n 1 56 LYS n 1 57 ASN n 1 58 TYR n 1 59 ASP n 1 60 THR n 1 61 LEU n 1 62 TYR n 1 63 ASP n 1 64 ILE n 1 65 MET n 1 66 GLU n 1 67 ARG n 1 68 ASP n 1 69 ILE n 1 70 LEU n 1 71 SER n 1 72 TYR n 1 73 ASN n 1 74 ILE n 1 75 VAL n 1 76 ASN n 1 77 ILE n 1 78 LYS n 1 79 ASN n 1 80 THR n 1 81 LEU n 1 82 THR n 1 83 PHE n 1 84 ALA n 1 85 LEU n 1 86 ARG n 1 87 ASP n 1 88 ALA n 1 89 SER n 1 90 PRO n 1 91 SER n 1 92 VAL n 1 93 LYS n 1 94 LEU n 1 95 ALA n 1 96 THR n 1 97 LEU n 1 98 THR n 1 99 LEU n 1 100 LEU n 1 101 ALA n 1 102 SER n 1 103 VAL n 1 104 ILE n 1 105 LYS n 1 106 LYS n 1 107 LEU n 1 108 ASN n 1 109 LYS n 1 110 ILE n 1 111 GLN n 1 112 HIS n 1 113 THR n 1 114 ASP n 1 115 ALA n 1 116 ALA n 1 117 MET n 1 118 PHE n 1 119 SER n 1 120 GLU n 1 121 VAL n 1 122 ILE n 1 123 ASP n 1 124 GLY n 1 125 ILE n 1 126 VAL n 1 127 ALA n 1 128 GLU n 1 129 GLU n 1 130 GLN n 1 131 GLN n 1 132 VAL n 1 133 ILE n 1 134 GLY n 1 135 PHE n 1 136 ILE n 1 137 GLN n 1 138 LYS n 1 139 LYS n 1 140 CYS n 1 141 LYS n 1 142 TYR n 1 143 ASN n 1 144 THR n 1 145 THR n 2 1 PRO n 2 2 SER n 2 3 SER n 2 4 THR n 2 5 MET n 2 6 GLY n 2 7 GLN n 2 8 VAL n 2 9 GLY n 2 10 ARG n 2 11 GLN n 2 12 LEU n 2 13 ALA n 2 14 ILE n 2 15 ILE n 2 16 GLY n 2 17 ASP n 2 18 ASP n 2 19 ILE n 2 20 ASN n 2 21 ARG n 2 22 ARG n 2 23 TYR n 2 24 ASP n 2 25 SER n 2 26 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain LAUSANNE _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MYXOMA VIRUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10273 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant PLYS _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PDUET _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP Q85295_9POXV 1 ? ? Q85295 ? 2 UNP BAK2_HUMAN 2 ? ? Q13014 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2JBY A 14 ? 145 ? Q85295 1 ? 132 ? 1 132 2 2 2JBY B 1 ? 26 ? Q13014 67 ? 92 ? 67 92 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2JBY MET A 1 ? UNP Q85295 ? ? 'expression tag' -12 1 1 2JBY GLY A 2 ? UNP Q85295 ? ? 'expression tag' -11 2 1 2JBY SER A 3 ? UNP Q85295 ? ? 'expression tag' -10 3 1 2JBY HIS A 4 ? UNP Q85295 ? ? 'expression tag' -9 4 1 2JBY HIS A 5 ? UNP Q85295 ? ? 'expression tag' -8 5 1 2JBY HIS A 6 ? UNP Q85295 ? ? 'expression tag' -7 6 1 2JBY HIS A 7 ? UNP Q85295 ? ? 'expression tag' -6 7 1 2JBY HIS A 8 ? UNP Q85295 ? ? 'expression tag' -5 8 1 2JBY HIS A 9 ? UNP Q85295 ? ? 'expression tag' -4 9 1 2JBY SER A 10 ? UNP Q85295 ? ? 'expression tag' -3 10 1 2JBY GLN A 11 ? UNP Q85295 ? ? 'expression tag' -2 11 1 2JBY ASP A 12 ? UNP Q85295 ? ? 'expression tag' -1 12 1 2JBY PRO A 13 ? UNP Q85295 ? ? 'expression tag' 0 13 1 2JBY MET A 14 ? UNP Q85295 ? ? 'expression tag' 1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2JBY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.71 _exptl_crystal.density_percent_sol 66.88 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2.4 M (NH4)2HPO4, 50MM TRIS PH 8.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2005-11-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength 0.99 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2JBY _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 2.40 _reflns.number_obs 11933 _reflns.number_all ? _reflns.percent_possible_obs 93.8 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.00 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.6 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 59.3 _reflns_shell.Rmerge_I_obs 0.38 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.00 _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2JBY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 10139 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.41 _refine.ls_percent_reflns_obs 94.1 _refine.ls_R_factor_obs 0.288 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.287 _refine.ls_R_factor_R_free 0.292 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.700 _refine.ls_number_reflns_R_free 1089 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.904 _refine.correlation_coeff_Fo_to_Fc_free 0.895 _refine.B_iso_mean 63.17 _refine.aniso_B[1][1] 1.31000 _refine.aniso_B[2][2] 1.31000 _refine.aniso_B[3][3] -2.62000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ATOM SG IN CYS28 CHAIN A APPEARS MOSTLY DISORDERED AND HAS BEEN ASSIGNED AN OCCUPANCY OF 0.2. ; _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.359 _refine.pdbx_overall_ESU_R_Free 0.260 _refine.overall_SU_ML 0.246 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 24.057 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1201 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 58 _refine_hist.number_atoms_total 1260 _refine_hist.d_res_high 2.41 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.022 ? 1172 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.052 1.969 ? 1585 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.387 5.000 ? 150 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 43.387 26.600 ? 50 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.361 15.000 ? 212 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.310 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.242 0.200 ? 193 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 853 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.277 0.200 ? 612 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.308 0.200 ? 836 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.220 0.200 ? 52 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.376 0.200 ? 23 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.521 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.446 2.000 ? 753 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.703 3.000 ? 1216 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 5.253 6.000 ? 425 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 6.840 6.000 ? 369 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.41 _refine_ls_shell.d_res_low 2.47 _refine_ls_shell.number_reflns_R_work 459 _refine_ls_shell.R_factor_R_work 0.3120 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.4280 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 2JBY _struct.title 'A viral protein unexpectedly mimics the structure and function of pro- survival Bcl-2' _struct.pdbx_descriptor 'M11L PROTEIN, BCL-2 HOMOLOGOUS ANTAGONIST/KILLER 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JBY _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text APOPTOSIS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 16 ? ASN A 27 ? SER A 3 ASN A 14 1 ? 12 HELX_P HELX_P2 2 ASP A 38 ? TYR A 54 ? ASP A 25 TYR A 41 1 ? 17 HELX_P HELX_P3 3 TYR A 54 ? SER A 71 ? TYR A 41 SER A 58 1 ? 18 HELX_P HELX_P4 4 ASN A 73 ? LEU A 85 ? ASN A 60 LEU A 72 1 ? 13 HELX_P HELX_P5 5 SER A 89 ? LYS A 109 ? SER A 76 LYS A 96 1 ? 21 HELX_P HELX_P6 6 ASP A 114 ? MET A 117 ? ASP A 101 MET A 104 5 ? 4 HELX_P HELX_P7 7 PHE A 118 ? VAL A 126 ? PHE A 105 VAL A 113 1 ? 9 HELX_P HELX_P8 8 GLU A 128 ? LYS A 138 ? GLU A 115 LYS A 125 1 ? 11 HELX_P HELX_P9 9 SER B 3 ? ASN B 20 ? SER B 69 ASN B 86 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 34 SG ? ? ? 1_555 A CYS 41 SG ? ? A CYS 21 A CYS 28 1_555 ? ? ? ? ? ? ? 2.024 ? disulf2 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 140 SG ? ? A CYS 33 A CYS 127 1_555 ? ? ? ? ? ? ? 2.041 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE NA A1129' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASP A 114 ? ASP A 101 . ? 1_555 ? 2 AC1 3 ALA A 115 ? ALA A 102 . ? 1_555 ? 3 AC1 3 ALA A 116 ? ALA A 103 . ? 1_555 ? # _database_PDB_matrix.entry_id 2JBY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2JBY _atom_sites.fract_transf_matrix[1][1] 0.014454 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014454 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008292 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -12 ? ? ? A . n A 1 2 GLY 2 -11 ? ? ? A . n A 1 3 SER 3 -10 ? ? ? A . n A 1 4 HIS 4 -9 ? ? ? A . n A 1 5 HIS 5 -8 ? ? ? A . n A 1 6 HIS 6 -7 ? ? ? A . n A 1 7 HIS 7 -6 ? ? ? A . n A 1 8 HIS 8 -5 ? ? ? A . n A 1 9 HIS 9 -4 ? ? ? A . n A 1 10 SER 10 -3 ? ? ? A . n A 1 11 GLN 11 -2 ? ? ? A . n A 1 12 ASP 12 -1 ? ? ? A . n A 1 13 PRO 13 0 ? ? ? A . n A 1 14 MET 14 1 ? ? ? A . n A 1 15 MET 15 2 2 MET MET A . n A 1 16 SER 16 3 3 SER SER A . n A 1 17 ARG 17 4 4 ARG ARG A . n A 1 18 LEU 18 5 5 LEU LEU A . n A 1 19 LYS 19 6 6 LYS LYS A . n A 1 20 THR 20 7 7 THR THR A . n A 1 21 ALA 21 8 8 ALA ALA A . n A 1 22 VAL 22 9 9 VAL VAL A . n A 1 23 TYR 23 10 10 TYR TYR A . n A 1 24 ASP 24 11 11 ASP ASP A . n A 1 25 TYR 25 12 12 TYR TYR A . n A 1 26 LEU 26 13 13 LEU LEU A . n A 1 27 ASN 27 14 14 ASN ASN A . n A 1 28 ASP 28 15 15 ASP ASP A . n A 1 29 VAL 29 16 16 VAL VAL A . n A 1 30 ASP 30 17 17 ASP ASP A . n A 1 31 ILE 31 18 18 ILE ILE A . n A 1 32 THR 32 19 19 THR THR A . n A 1 33 GLU 33 20 20 GLU GLU A . n A 1 34 CYS 34 21 21 CYS CYS A . n A 1 35 THR 35 22 22 THR THR A . n A 1 36 GLU 36 23 23 GLU GLU A . n A 1 37 MET 37 24 24 MET MET A . n A 1 38 ASP 38 25 25 ASP ASP A . n A 1 39 LEU 39 26 26 LEU LEU A . n A 1 40 LEU 40 27 27 LEU LEU A . n A 1 41 CYS 41 28 28 CYS CYS A . n A 1 42 GLN 42 29 29 GLN GLN A . n A 1 43 LEU 43 30 30 LEU LEU A . n A 1 44 SER 44 31 31 SER SER A . n A 1 45 ASN 45 32 32 ASN ASN A . n A 1 46 CYS 46 33 33 CYS CYS A . n A 1 47 CYS 47 34 34 CYS CYS A . n A 1 48 ASP 48 35 35 ASP ASP A . n A 1 49 PHE 49 36 36 PHE PHE A . n A 1 50 ILE 50 37 37 ILE ILE A . n A 1 51 ASN 51 38 38 ASN ASN A . n A 1 52 GLU 52 39 39 GLU GLU A . n A 1 53 THR 53 40 40 THR THR A . n A 1 54 TYR 54 41 41 TYR TYR A . n A 1 55 ALA 55 42 42 ALA ALA A . n A 1 56 LYS 56 43 43 LYS LYS A . n A 1 57 ASN 57 44 44 ASN ASN A . n A 1 58 TYR 58 45 45 TYR TYR A . n A 1 59 ASP 59 46 46 ASP ASP A . n A 1 60 THR 60 47 47 THR THR A . n A 1 61 LEU 61 48 48 LEU LEU A . n A 1 62 TYR 62 49 49 TYR TYR A . n A 1 63 ASP 63 50 50 ASP ASP A . n A 1 64 ILE 64 51 51 ILE ILE A . n A 1 65 MET 65 52 52 MET MET A . n A 1 66 GLU 66 53 53 GLU GLU A . n A 1 67 ARG 67 54 54 ARG ARG A . n A 1 68 ASP 68 55 55 ASP ASP A . n A 1 69 ILE 69 56 56 ILE ILE A . n A 1 70 LEU 70 57 57 LEU LEU A . n A 1 71 SER 71 58 58 SER SER A . n A 1 72 TYR 72 59 59 TYR TYR A . n A 1 73 ASN 73 60 60 ASN ASN A . n A 1 74 ILE 74 61 61 ILE ILE A . n A 1 75 VAL 75 62 62 VAL VAL A . n A 1 76 ASN 76 63 63 ASN ASN A . n A 1 77 ILE 77 64 64 ILE ILE A . n A 1 78 LYS 78 65 65 LYS LYS A . n A 1 79 ASN 79 66 66 ASN ASN A . n A 1 80 THR 80 67 67 THR THR A . n A 1 81 LEU 81 68 68 LEU LEU A . n A 1 82 THR 82 69 69 THR THR A . n A 1 83 PHE 83 70 70 PHE PHE A . n A 1 84 ALA 84 71 71 ALA ALA A . n A 1 85 LEU 85 72 72 LEU LEU A . n A 1 86 ARG 86 73 73 ARG ARG A . n A 1 87 ASP 87 74 74 ASP ASP A . n A 1 88 ALA 88 75 75 ALA ALA A . n A 1 89 SER 89 76 76 SER SER A . n A 1 90 PRO 90 77 77 PRO PRO A . n A 1 91 SER 91 78 78 SER SER A . n A 1 92 VAL 92 79 79 VAL VAL A . n A 1 93 LYS 93 80 80 LYS LYS A . n A 1 94 LEU 94 81 81 LEU LEU A . n A 1 95 ALA 95 82 82 ALA ALA A . n A 1 96 THR 96 83 83 THR THR A . n A 1 97 LEU 97 84 84 LEU LEU A . n A 1 98 THR 98 85 85 THR THR A . n A 1 99 LEU 99 86 86 LEU LEU A . n A 1 100 LEU 100 87 87 LEU LEU A . n A 1 101 ALA 101 88 88 ALA ALA A . n A 1 102 SER 102 89 89 SER SER A . n A 1 103 VAL 103 90 90 VAL VAL A . n A 1 104 ILE 104 91 91 ILE ILE A . n A 1 105 LYS 105 92 92 LYS LYS A . n A 1 106 LYS 106 93 93 LYS LYS A . n A 1 107 LEU 107 94 94 LEU LEU A . n A 1 108 ASN 108 95 95 ASN ASN A . n A 1 109 LYS 109 96 96 LYS LYS A . n A 1 110 ILE 110 97 97 ILE ILE A . n A 1 111 GLN 111 98 98 GLN GLN A . n A 1 112 HIS 112 99 99 HIS HIS A . n A 1 113 THR 113 100 100 THR THR A . n A 1 114 ASP 114 101 101 ASP ASP A . n A 1 115 ALA 115 102 102 ALA ALA A . n A 1 116 ALA 116 103 103 ALA ALA A . n A 1 117 MET 117 104 104 MET MET A . n A 1 118 PHE 118 105 105 PHE PHE A . n A 1 119 SER 119 106 106 SER SER A . n A 1 120 GLU 120 107 107 GLU GLU A . n A 1 121 VAL 121 108 108 VAL VAL A . n A 1 122 ILE 122 109 109 ILE ILE A . n A 1 123 ASP 123 110 110 ASP ASP A . n A 1 124 GLY 124 111 111 GLY GLY A . n A 1 125 ILE 125 112 112 ILE ILE A . n A 1 126 VAL 126 113 113 VAL VAL A . n A 1 127 ALA 127 114 114 ALA ALA A . n A 1 128 GLU 128 115 115 GLU GLU A . n A 1 129 GLU 129 116 116 GLU GLU A . n A 1 130 GLN 130 117 117 GLN GLN A . n A 1 131 GLN 131 118 118 GLN GLN A . n A 1 132 VAL 132 119 119 VAL VAL A . n A 1 133 ILE 133 120 120 ILE ILE A . n A 1 134 GLY 134 121 121 GLY GLY A . n A 1 135 PHE 135 122 122 PHE PHE A . n A 1 136 ILE 136 123 123 ILE ILE A . n A 1 137 GLN 137 124 124 GLN GLN A . n A 1 138 LYS 138 125 125 LYS LYS A . n A 1 139 LYS 139 126 126 LYS LYS A . n A 1 140 CYS 140 127 127 CYS CYS A . n A 1 141 LYS 141 128 128 LYS LYS A . n A 1 142 TYR 142 129 ? ? ? A . n A 1 143 ASN 143 130 ? ? ? A . n A 1 144 THR 144 131 ? ? ? A . n A 1 145 THR 145 132 ? ? ? A . n B 2 1 PRO 1 67 ? ? ? B . n B 2 2 SER 2 68 68 SER SER B . n B 2 3 SER 3 69 69 SER SER B . n B 2 4 THR 4 70 70 THR THR B . n B 2 5 MET 5 71 71 MET MET B . n B 2 6 GLY 6 72 72 GLY GLY B . n B 2 7 GLN 7 73 73 GLN GLN B . n B 2 8 VAL 8 74 74 VAL VAL B . n B 2 9 GLY 9 75 75 GLY GLY B . n B 2 10 ARG 10 76 76 ARG ARG B . n B 2 11 GLN 11 77 77 GLN GLN B . n B 2 12 LEU 12 78 78 LEU LEU B . n B 2 13 ALA 13 79 79 ALA ALA B . n B 2 14 ILE 14 80 80 ILE ILE B . n B 2 15 ILE 15 81 81 ILE ILE B . n B 2 16 GLY 16 82 82 GLY GLY B . n B 2 17 ASP 17 83 83 ASP ASP B . n B 2 18 ASP 18 84 84 ASP ASP B . n B 2 19 ILE 19 85 85 ILE ILE B . n B 2 20 ASN 20 86 86 ASN ASN B . n B 2 21 ARG 21 87 87 ARG ARG B . n B 2 22 ARG 22 88 88 ARG ARG B . n B 2 23 TYR 23 89 89 TYR TYR B . n B 2 24 ASP 24 90 90 ASP ASP B . n B 2 25 SER 25 91 91 SER SER B . n B 2 26 GLU 26 92 92 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA 1 1129 1129 NA NA A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . E 4 HOH 1 2001 2001 HOH HOH B . E 4 HOH 2 2002 2002 HOH HOH B . E 4 HOH 3 2003 2003 HOH HOH B . E 4 HOH 4 2004 2004 HOH HOH B . E 4 HOH 5 2005 2005 HOH HOH B . E 4 HOH 6 2006 2006 HOH HOH B . E 4 HOH 7 2007 2007 HOH HOH B . E 4 HOH 8 2008 2008 HOH HOH B . E 4 HOH 9 2009 2009 HOH HOH B . E 4 HOH 10 2010 2010 HOH HOH B . E 4 HOH 11 2011 2011 HOH HOH B . E 4 HOH 12 2012 2012 HOH HOH B . E 4 HOH 13 2013 2013 HOH HOH B . E 4 HOH 14 2014 2014 HOH HOH B . E 4 HOH 15 2015 2015 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1840 ? 1 MORE -24.3 ? 1 'SSA (A^2)' 8370 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-03-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-06-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' citation_author 3 3 'Structure model' diffrn_radiation 4 3 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_abbrev' 2 3 'Structure model' '_citation.page_last' 3 3 'Structure model' '_citation.pdbx_database_id_DOI' 4 3 'Structure model' '_citation.title' 5 3 'Structure model' '_citation_author.name' 6 3 'Structure model' '_diffrn_radiation.pdbx_diffrn_protocol' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 39.0223 76.9022 -15.4136 0.0621 -0.2264 -0.2575 -0.0186 0.0568 -0.0369 4.0376 1.3246 2.2393 0.6083 -0.7661 -0.9291 0.0339 -0.0705 -0.1263 -0.1609 -0.0967 -0.0846 -0.2448 0.1711 0.0628 'X-RAY DIFFRACTION' 2 ? refined 41.2566 63.8500 -10.5301 0.2360 -0.1564 0.0867 0.0388 0.0294 0.2195 5.0701 15.9634 8.6740 2.2324 2.2913 3.5277 -0.9134 -0.3493 -1.8088 0.4736 0.0929 -0.1247 0.9077 1.6039 0.8205 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 2 ? ? A 128 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 1129 ? ? A 1129 ? ? ? ? 'X-RAY DIFFRACTION' 3 1 A 2001 ? ? A 2043 ? ? ? ? 'X-RAY DIFFRACTION' 4 1 B 2001 ? ? B 2015 ? ? ? ? 'X-RAY DIFFRACTION' 5 2 B 68 ? ? B 92 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.2.0005 ? 1 ? ? ? ? HKL-2000 'data reduction' . ? 2 ? ? ? ? HKL-2000 'data scaling' . ? 3 ? ? ? ? SHARP phasing . ? 4 ? ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 43 ? ? O A HOH 2019 ? ? 1.93 2 1 O A PHE 70 ? ? NH1 A ARG 73 ? ? 1.97 3 1 O B HOH 2006 ? ? O B HOH 2015 ? ? 2.03 4 1 O A ASP 35 ? ? O A HOH 2015 ? ? 2.12 5 1 ND2 A ASN 14 ? ? O A HOH 2006 ? ? 2.18 6 1 O B HOH 2003 ? ? O B HOH 2005 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A VAL 16 ? ? CG2 A VAL 16 ? ? 1.247 1.524 -0.277 0.021 N 2 1 CG A LEU 57 ? ? CD1 A LEU 57 ? ? 1.262 1.514 -0.252 0.037 N 3 1 CZ A ARG 73 ? ? NH1 A ARG 73 ? ? 1.129 1.326 -0.197 0.013 N 4 1 CZ A ARG 73 ? ? NH2 A ARG 73 ? ? 1.704 1.326 0.378 0.013 N 5 1 CD A LYS 96 ? ? CE A LYS 96 ? ? 1.726 1.508 0.218 0.025 N 6 1 CD A GLN 98 ? ? NE2 A GLN 98 ? ? 1.163 1.324 -0.161 0.025 N 7 1 NE B ARG 76 ? ? CZ B ARG 76 ? ? 1.453 1.326 0.127 0.013 N 8 1 CA B ARG 88 ? ? CB B ARG 88 ? ? 1.299 1.535 -0.236 0.022 N 9 1 CA B TYR 89 ? ? CB B TYR 89 ? ? 1.707 1.535 0.172 0.022 N 10 1 CZ B TYR 89 ? ? OH B TYR 89 ? ? 1.687 1.374 0.313 0.017 N 11 1 CG B ASP 90 ? ? OD2 B ASP 90 ? ? 1.106 1.249 -0.143 0.023 N 12 1 CD B GLU 92 ? ? OE1 B GLU 92 ? ? 1.367 1.252 0.115 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG1 A ILE 56 ? ? CB A ILE 56 ? ? CG2 A ILE 56 ? ? 127.01 111.40 15.61 2.20 N 2 1 CB A LEU 57 ? ? CG A LEU 57 ? ? CD2 A LEU 57 ? ? 94.77 111.00 -16.23 1.70 N 3 1 CD A ARG 73 ? ? NE A ARG 73 ? ? CZ A ARG 73 ? ? 132.82 123.60 9.22 1.40 N 4 1 NH1 A ARG 73 ? ? CZ A ARG 73 ? ? NH2 A ARG 73 ? ? 96.35 119.40 -23.05 1.10 N 5 1 NE A ARG 73 ? ? CZ A ARG 73 ? ? NH1 A ARG 73 ? ? 143.65 120.30 23.35 0.50 N 6 1 CG A MET 104 ? ? SD A MET 104 ? ? CE A MET 104 ? ? 110.54 100.20 10.34 1.60 N 7 1 CB A LYS 126 ? ? CG A LYS 126 ? ? CD A LYS 126 ? ? 86.75 111.60 -24.85 2.60 N 8 1 NE B ARG 76 ? ? CZ B ARG 76 ? ? NH1 B ARG 76 ? ? 128.96 120.30 8.66 0.50 N 9 1 NE B ARG 76 ? ? CZ B ARG 76 ? ? NH2 B ARG 76 ? ? 116.46 120.30 -3.84 0.50 N 10 1 CB B ARG 88 ? ? CA B ARG 88 ? ? C B ARG 88 ? ? 96.99 110.40 -13.41 2.00 N 11 1 N B ARG 88 ? ? CA B ARG 88 ? ? CB B ARG 88 ? ? 124.60 110.60 14.00 1.80 N 12 1 CB B ASP 90 ? ? CG B ASP 90 ? ? OD2 B ASP 90 ? ? 90.89 118.30 -27.41 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 15 ? ? 0.08 84.97 2 1 ASP A 17 ? ? 84.03 99.15 3 1 GLU A 20 ? ? 55.59 78.86 4 1 ASN A 60 ? ? -106.65 73.91 5 1 SER B 69 ? ? 72.49 -19.76 6 1 ILE B 85 ? ? -92.14 -82.65 7 1 ARG B 87 ? ? 164.46 -43.41 8 1 ARG B 88 ? ? -68.07 -76.46 9 1 TYR B 89 ? ? -85.79 31.22 10 1 ASP B 90 ? ? -110.41 -109.04 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASP _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 74 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ALA _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 75 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -146.67 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR B 89 ? ? 0.096 'SIDE CHAIN' 2 1 ASP B 90 ? ? 0.176 'SIDE CHAIN' # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CB _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id ILE _pdbx_validate_chiral.auth_seq_id 56 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2002 ? 7.09 . 2 1 O ? B HOH 2001 ? 12.02 . 3 1 O ? B HOH 2002 ? 12.26 . 4 1 O ? B HOH 2003 ? 9.23 . 5 1 O ? B HOH 2004 ? 9.03 . 6 1 O ? B HOH 2005 ? 8.39 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -12 ? A MET 1 2 1 Y 1 A GLY -11 ? A GLY 2 3 1 Y 1 A SER -10 ? A SER 3 4 1 Y 1 A HIS -9 ? A HIS 4 5 1 Y 1 A HIS -8 ? A HIS 5 6 1 Y 1 A HIS -7 ? A HIS 6 7 1 Y 1 A HIS -6 ? A HIS 7 8 1 Y 1 A HIS -5 ? A HIS 8 9 1 Y 1 A HIS -4 ? A HIS 9 10 1 Y 1 A SER -3 ? A SER 10 11 1 Y 1 A GLN -2 ? A GLN 11 12 1 Y 1 A ASP -1 ? A ASP 12 13 1 Y 1 A PRO 0 ? A PRO 13 14 1 Y 1 A MET 1 ? A MET 14 15 1 Y 1 A TYR 129 ? A TYR 142 16 1 Y 1 A ASN 130 ? A ASN 143 17 1 Y 1 A THR 131 ? A THR 144 18 1 Y 1 A THR 132 ? A THR 145 19 1 Y 1 B PRO 67 ? B PRO 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SODIUM ION' NA 4 water HOH #