HEADER APOPTOSIS 14-DEC-06 2JBY TITLE A VIRAL PROTEIN UNEXPECTEDLY MIMICS THE STRUCTURE AND FUNCTION OF PRO- TITLE 2 SURVIVAL BCL-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: M11L PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-132; COMPND 5 SYNONYM: APOPTOSIS REGULATOR M11L, M11L; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BCL-2 HOMOLOGOUS ANTAGONIST/KILLER 2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: BH3 DOMAIN, RESIDUES 67-92; COMPND 11 SYNONYM: APOPTOSIS REGULATOR BAK-2, BAK; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOMA VIRUS; SOURCE 3 ORGANISM_TAXID: 10273; SOURCE 4 STRAIN: LAUSANNE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PDUET; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR M.KVANSAKUL,M.F.VAN DELFT,E.F.LEE,J.M.GULBIS,W.D.FAIRLIE,D.C.S.HUANG, AUTHOR 2 P.M.COLMAN REVDAT 5 13-JUN-18 2JBY 1 JRNL REMARK REVDAT 4 13-JUL-11 2JBY 1 VERSN REVDAT 3 24-FEB-09 2JBY 1 VERSN REVDAT 2 20-NOV-07 2JBY 1 JRNL REVDAT 1 27-MAR-07 2JBY 0 JRNL AUTH M.KVANSAKUL,M.F.VAN DELFT,E.F.LEE,J.M.GULBIS,W.D.FAIRLIE, JRNL AUTH 2 D.C.HUANG,P.M.COLMAN JRNL TITL A STRUCTURAL VIRAL MIMIC OF PROSURVIVAL BCL-2: A PIVOTAL JRNL TITL 2 ROLE FOR SEQUESTERING PROAPOPTOTIC BAX AND BAK. JRNL REF MOL. CELL V. 25 933 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17386268 JRNL DOI 10.1016/J.MOLCEL.2007.02.004 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 10139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.288 REMARK 3 R VALUE (WORKING SET) : 0.287 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1089 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 459 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1201 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.31000 REMARK 3 B22 (A**2) : 1.31000 REMARK 3 B33 (A**2) : -2.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.359 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.260 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.057 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1172 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1585 ; 2.052 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 150 ; 7.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;43.387 ;26.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 212 ;21.361 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;15.310 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 193 ; 0.242 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 853 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 612 ; 0.277 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 836 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 52 ; 0.220 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.376 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.521 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 753 ; 1.446 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1216 ; 2.703 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 425 ; 5.253 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 369 ; 6.840 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 128 REMARK 3 RESIDUE RANGE : A 1129 A 1129 REMARK 3 RESIDUE RANGE : A 2001 A 2043 REMARK 3 RESIDUE RANGE : B 2001 B 2015 REMARK 3 ORIGIN FOR THE GROUP (A): 39.0223 76.9022 -15.4136 REMARK 3 T TENSOR REMARK 3 T11: 0.0621 T22: -0.2264 REMARK 3 T33: -0.2575 T12: -0.0186 REMARK 3 T13: 0.0568 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 4.0376 L22: 1.3246 REMARK 3 L33: 2.2393 L12: 0.6083 REMARK 3 L13: -0.7661 L23: -0.9291 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: -0.0705 S13: -0.1263 REMARK 3 S21: -0.1609 S22: -0.0967 S23: -0.0846 REMARK 3 S31: -0.2448 S32: 0.1711 S33: 0.0628 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 41.2566 63.8500 -10.5301 REMARK 3 T TENSOR REMARK 3 T11: 0.2360 T22: -0.1564 REMARK 3 T33: 0.0867 T12: 0.0388 REMARK 3 T13: 0.0294 T23: 0.2195 REMARK 3 L TENSOR REMARK 3 L11: 5.0701 L22: 15.9634 REMARK 3 L33: 8.6740 L12: 2.2324 REMARK 3 L13: 2.2913 L23: 3.5277 REMARK 3 S TENSOR REMARK 3 S11: -0.9134 S12: -0.3493 S13: -1.8088 REMARK 3 S21: 0.4736 S22: 0.0929 S23: -0.1247 REMARK 3 S31: 0.9077 S32: 1.6039 S33: 0.8205 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM SG IN CYS28 CHAIN A APPEARS MOSTLY DISORDERED REMARK 3 AND HAS BEEN ASSIGNED AN OCCUPANCY OF 0.2. REMARK 4 REMARK 4 2JBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1290030815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11933 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M (NH4)2HPO4, 50MM TRIS PH 8.5, PH REMARK 280 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.30050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.59350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.59350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.15025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.59350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.59350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.45075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.59350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.59350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.15025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.59350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.59350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.45075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.30050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 GLN A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 TYR A 129 REMARK 465 ASN A 130 REMARK 465 THR A 131 REMARK 465 THR A 132 REMARK 465 PRO B 67 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 16 CG2 REMARK 480 LYS A 43 CD CE NZ REMARK 480 LEU A 57 CD1 CD2 REMARK 480 ARG A 73 CZ REMARK 480 LYS A 96 CE NZ REMARK 480 GLN A 98 NE2 REMARK 480 LYS A 125 CG CD CE NZ REMARK 480 LYS A 126 CD CE NZ REMARK 480 ARG B 87 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 88 CB CG CD NE CZ NH1 NH2 REMARK 480 TYR B 89 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 ASP B 90 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 43 O HOH A 2019 1.93 REMARK 500 O PHE A 70 NH1 ARG A 73 1.97 REMARK 500 O HOH B 2006 O HOH B 2015 2.03 REMARK 500 O ASP A 35 O HOH A 2015 2.12 REMARK 500 ND2 ASN A 14 O HOH A 2006 2.18 REMARK 500 O HOH B 2003 O HOH B 2005 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 16 CB VAL A 16 CG2 -0.277 REMARK 500 LEU A 57 CG LEU A 57 CD1 -0.252 REMARK 500 ARG A 73 CZ ARG A 73 NH1 -0.197 REMARK 500 ARG A 73 CZ ARG A 73 NH2 0.378 REMARK 500 LYS A 96 CD LYS A 96 CE 0.218 REMARK 500 GLN A 98 CD GLN A 98 NE2 -0.161 REMARK 500 ARG B 76 NE ARG B 76 CZ 0.127 REMARK 500 ARG B 88 CA ARG B 88 CB -0.236 REMARK 500 TYR B 89 CA TYR B 89 CB 0.172 REMARK 500 TYR B 89 CZ TYR B 89 OH 0.313 REMARK 500 ASP B 90 CG ASP B 90 OD2 -0.143 REMARK 500 GLU B 92 CD GLU B 92 OE1 0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 56 CG1 - CB - CG2 ANGL. DEV. = 15.6 DEGREES REMARK 500 LEU A 57 CB - CG - CD2 ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG A 73 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 73 NH1 - CZ - NH2 ANGL. DEV. = -23.1 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 23.4 DEGREES REMARK 500 MET A 104 CG - SD - CE ANGL. DEV. = 10.3 DEGREES REMARK 500 LYS A 126 CB - CG - CD ANGL. DEV. = -24.9 DEGREES REMARK 500 ARG B 76 NE - CZ - NH1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG B 76 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 88 CB - CA - C ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG B 88 N - CA - CB ANGL. DEV. = 14.0 DEGREES REMARK 500 ASP B 90 CB - CG - OD2 ANGL. DEV. = -27.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 84.97 0.08 REMARK 500 ASP A 17 99.15 84.03 REMARK 500 GLU A 20 78.86 55.59 REMARK 500 ASN A 60 73.91 -106.65 REMARK 500 SER B 69 -19.76 72.49 REMARK 500 ILE B 85 -82.65 -92.14 REMARK 500 ARG B 87 -43.41 164.46 REMARK 500 ARG B 88 -76.46 -68.07 REMARK 500 TYR B 89 31.22 -85.79 REMARK 500 ASP B 90 -109.04 -110.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 74 ALA A 75 -146.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 89 0.10 SIDE CHAIN REMARK 500 ASP B 90 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2002 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH B2001 DISTANCE = 12.02 ANGSTROMS REMARK 525 HOH B2002 DISTANCE = 12.26 ANGSTROMS REMARK 525 HOH B2003 DISTANCE = 9.23 ANGSTROMS REMARK 525 HOH B2004 DISTANCE = 9.03 ANGSTROMS REMARK 525 HOH B2005 DISTANCE = 8.39 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A1129 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JBX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MYXOMA VIRUS ANTI- APOPTOTIC PROTEIN M11L DBREF 2JBY A 1 132 UNP Q85295 Q85295_9POXV 1 132 DBREF 2JBY B 67 92 UNP Q13014 BAK2_HUMAN 67 92 SEQADV 2JBY MET A -12 UNP Q85295 EXPRESSION TAG SEQADV 2JBY GLY A -11 UNP Q85295 EXPRESSION TAG SEQADV 2JBY SER A -10 UNP Q85295 EXPRESSION TAG SEQADV 2JBY HIS A -9 UNP Q85295 EXPRESSION TAG SEQADV 2JBY HIS A -8 UNP Q85295 EXPRESSION TAG SEQADV 2JBY HIS A -7 UNP Q85295 EXPRESSION TAG SEQADV 2JBY HIS A -6 UNP Q85295 EXPRESSION TAG SEQADV 2JBY HIS A -5 UNP Q85295 EXPRESSION TAG SEQADV 2JBY HIS A -4 UNP Q85295 EXPRESSION TAG SEQADV 2JBY SER A -3 UNP Q85295 EXPRESSION TAG SEQADV 2JBY GLN A -2 UNP Q85295 EXPRESSION TAG SEQADV 2JBY ASP A -1 UNP Q85295 EXPRESSION TAG SEQADV 2JBY PRO A 0 UNP Q85295 EXPRESSION TAG SEQADV 2JBY MET A 1 UNP Q85295 EXPRESSION TAG SEQRES 1 A 145 MET GLY SER HIS HIS HIS HIS HIS HIS SER GLN ASP PRO SEQRES 2 A 145 MET MET SER ARG LEU LYS THR ALA VAL TYR ASP TYR LEU SEQRES 3 A 145 ASN ASP VAL ASP ILE THR GLU CYS THR GLU MET ASP LEU SEQRES 4 A 145 LEU CYS GLN LEU SER ASN CYS CYS ASP PHE ILE ASN GLU SEQRES 5 A 145 THR TYR ALA LYS ASN TYR ASP THR LEU TYR ASP ILE MET SEQRES 6 A 145 GLU ARG ASP ILE LEU SER TYR ASN ILE VAL ASN ILE LYS SEQRES 7 A 145 ASN THR LEU THR PHE ALA LEU ARG ASP ALA SER PRO SER SEQRES 8 A 145 VAL LYS LEU ALA THR LEU THR LEU LEU ALA SER VAL ILE SEQRES 9 A 145 LYS LYS LEU ASN LYS ILE GLN HIS THR ASP ALA ALA MET SEQRES 10 A 145 PHE SER GLU VAL ILE ASP GLY ILE VAL ALA GLU GLU GLN SEQRES 11 A 145 GLN VAL ILE GLY PHE ILE GLN LYS LYS CYS LYS TYR ASN SEQRES 12 A 145 THR THR SEQRES 1 B 26 PRO SER SER THR MET GLY GLN VAL GLY ARG GLN LEU ALA SEQRES 2 B 26 ILE ILE GLY ASP ASP ILE ASN ARG ARG TYR ASP SER GLU HET NA A1129 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *58(H2 O) HELIX 1 1 SER A 3 ASN A 14 1 12 HELIX 2 2 ASP A 25 TYR A 41 1 17 HELIX 3 3 TYR A 41 SER A 58 1 18 HELIX 4 4 ASN A 60 LEU A 72 1 13 HELIX 5 5 SER A 76 LYS A 96 1 21 HELIX 6 6 ASP A 101 MET A 104 5 4 HELIX 7 7 PHE A 105 VAL A 113 1 9 HELIX 8 8 GLU A 115 LYS A 125 1 11 HELIX 9 9 SER B 69 ASN B 86 1 18 SSBOND 1 CYS A 21 CYS A 28 1555 1555 2.02 SSBOND 2 CYS A 33 CYS A 127 1555 1555 2.04 SITE 1 AC1 3 ASP A 101 ALA A 102 ALA A 103 CRYST1 69.187 69.187 120.601 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014454 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014454 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008292 0.00000