HEADER HYDROLASE 18-DEC-06 2JC1 TITLE CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN TITLE 2 COMPLEX WITH INHIBITOR SB698223 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DEPENDENT RNA-POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-570; COMPND 5 SYNONYM: HEPATITIS C VIRUS RNA POLYMERASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 STRAIN: BK21; SOURCE 5 VARIANT: 1B ISOLATE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEPATITIS, POLYMERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.WONACOTT,T.SKARZYNSKI,O.M.SINGH REVDAT 3 24-FEB-09 2JC1 1 VERSN REVDAT 2 13-MAR-07 2JC1 1 JRNL REVDAT 1 13-FEB-07 2JC1 0 JRNL AUTH M.J.SLATER,E.M.AMPHLETT,D.M.ANDREWS,G.BRAVI, JRNL AUTH 2 G.BURTON,A.G.CHEASTY,J.A.CORFIELD,M.R.ELLIS, JRNL AUTH 3 R.H.FENWICK,S.FERNANDES,R.GUIDETTI,D.HAIGH, JRNL AUTH 4 C.D.HARTLEY,P.D.HOWES,D.L.JACKSON,R.L.JARVEST, JRNL AUTH 5 V.L.LOVEGROVE,K.J.MEDHURST,N.R.PARRY,H.PRICE, JRNL AUTH 6 P.SHAH,O.M.SINGH,R.STOCKER,P.THOMMES,C.WILKINSON, JRNL AUTH 7 A.WONACOTT JRNL TITL OPTIMIZATION OF NOVEL ACYL PYRROLIDINE INHIBITORS JRNL TITL 2 OF HEPATITIS C VIRUS RNA-DEPENDENT RNA POLYMERASE JRNL TITL 3 LEADING TO A DEVELOPMENT CANDIDATE. JRNL REF J.MED.CHEM. V. 50 897 2007 JRNL REFN ISSN 0022-2623 JRNL PMID 17269759 JRNL DOI 10.1021/JM061207R REMARK 2 REMARK 2 RESOLUTION. 2.0 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0006 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 70778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3756 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3630 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 173 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 654 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 1.51000 REMARK 3 B33 (A**2) : -1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.001 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8780 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11923 ; 1.334 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1087 ; 5.745 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 358 ;32.893 ;22.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1487 ;13.547 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 70 ;13.468 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1351 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6558 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4231 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 6090 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 679 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5645 ; 0.849 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8815 ; 1.331 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3643 ; 2.194 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3108 ; 3.381 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2JC1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-06. REMARK 100 THE PDBE ID CODE IS EBI-30851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 27.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA):2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.12000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.12000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 149 REMARK 465 GLU A 150 REMARK 465 LYS A 151 REMARK 465 GLY A 152 REMARK 465 GLY A 153 REMARK 465 ALA A 542 REMARK 465 SER A 543 REMARK 465 GLN A 544 REMARK 465 LEU A 545 REMARK 465 ASP A 546 REMARK 465 LEU A 547 REMARK 465 SER A 548 REMARK 465 SER A 549 REMARK 465 SER A 563 REMARK 465 LEU A 564 REMARK 465 SER A 565 REMARK 465 ARG A 566 REMARK 465 ALA A 567 REMARK 465 ARG A 568 REMARK 465 PRO A 569 REMARK 465 ARG A 570 REMARK 465 PRO B 149 REMARK 465 GLU B 150 REMARK 465 LYS B 151 REMARK 465 GLY B 152 REMARK 465 GLY B 153 REMARK 465 LYS B 533 REMARK 465 LEU B 534 REMARK 465 LYS B 535 REMARK 465 PRO B 540 REMARK 465 ALA B 541 REMARK 465 ALA B 542 REMARK 465 SER B 543 REMARK 465 GLN B 544 REMARK 465 LEU B 545 REMARK 465 ASP B 546 REMARK 465 LEU B 547 REMARK 465 SER B 548 REMARK 465 SER B 549 REMARK 465 LEU B 564 REMARK 465 SER B 565 REMARK 465 ARG B 566 REMARK 465 ALA B 567 REMARK 465 ARG B 568 REMARK 465 PRO B 569 REMARK 465 ARG B 570 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 46 CB OG REMARK 470 SER B 46 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 14 CB CYS B 14 SG -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 24 -162.23 -127.24 REMARK 500 LEU A 260 -53.81 -128.15 REMARK 500 SER A 347 66.05 71.34 REMARK 500 ALA A 348 68.00 -162.22 REMARK 500 ILE A 424 -62.02 -103.03 REMARK 500 PRO A 540 -165.94 -78.23 REMARK 500 LEU B 260 -54.77 -130.82 REMARK 500 SER B 347 56.95 73.07 REMARK 500 ALA B 348 66.85 -155.39 REMARK 500 PRO B 538 156.86 -49.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 698 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 698 B 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I1R RELATED DB: PDB REMARK 900 NOVEL THIAZOLONES AS HCV NS5B POLYMERASE REMARK 900 INHIBITORS:FURTHER DESIGNS, SYNTHESIS, SAR AND REMARK 900 X-RAY COMPLEX STRUCTURE REMARK 900 RELATED ID: 2JC0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEPATITIS C VIRUS REMARK 900 POLYMERASE IN COMPLEX WITH INHIBITOR SB655264 DBREF 2JC1 A 1 570 UNP O39930 O39930_9HEPC 1 570 DBREF 2JC1 B 1 570 UNP O39930 O39930_9HEPC 1 570 SEQADV 2JC1 HIS A 120 UNP O39930 ARG 120 CONFLICT SEQADV 2JC1 VAL A 131 UNP O39930 GLU 131 CONFLICT SEQADV 2JC1 VAL A 185 UNP O39930 ALA 185 CONFLICT SEQADV 2JC1 ASN A 213 UNP O39930 CYS 213 CONFLICT SEQADV 2JC1 LYS A 254 UNP O39930 ARG 254 CONFLICT SEQADV 2JC1 ASN A 316 UNP O39930 CYS 316 CONFLICT SEQADV 2JC1 VAL A 329 UNP O39930 THR 329 CONFLICT SEQADV 2JC1 VAL A 338 UNP O39930 ALA 338 CONFLICT SEQADV 2JC1 GLU A 464 UNP O39930 GLN 464 CONFLICT SEQADV 2JC1 LYS A 531 UNP O39930 ARG 531 CONFLICT SEQADV 2JC1 HIS B 120 UNP O39930 ARG 120 CONFLICT SEQADV 2JC1 VAL B 131 UNP O39930 GLU 131 CONFLICT SEQADV 2JC1 VAL B 185 UNP O39930 ALA 185 CONFLICT SEQADV 2JC1 ASN B 213 UNP O39930 CYS 213 CONFLICT SEQADV 2JC1 LYS B 254 UNP O39930 ARG 254 CONFLICT SEQADV 2JC1 ASN B 316 UNP O39930 CYS 316 CONFLICT SEQADV 2JC1 VAL B 329 UNP O39930 THR 329 CONFLICT SEQADV 2JC1 VAL B 338 UNP O39930 ALA 338 CONFLICT SEQADV 2JC1 GLU B 464 UNP O39930 GLN 464 CONFLICT SEQADV 2JC1 LYS B 531 UNP O39930 ARG 531 CONFLICT SEQRES 1 A 570 SER MET SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 A 570 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN ALA LEU SEQRES 3 A 570 SER ASN SER LEU LEU ARG HIS HIS ASN MET VAL TYR ALA SEQRES 4 A 570 THR THR SER ARG SER ALA SER LEU ARG GLN LYS LYS VAL SEQRES 5 A 570 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 A 570 ASP VAL LEU LYS GLU MET LYS ALA LYS ALA SER THR VAL SEQRES 7 A 570 LYS ALA LYS LEU LEU SER VAL GLU GLU ALA CYS LYS LEU SEQRES 8 A 570 THR PRO PRO HIS SER ALA LYS SER LYS PHE GLY TYR GLY SEQRES 9 A 570 ALA LYS ASP VAL ARG ASN LEU SER SER LYS ALA VAL ASN SEQRES 10 A 570 HIS ILE HIS SER VAL TRP LYS ASP LEU LEU GLU ASP THR SEQRES 11 A 570 VAL THR PRO ILE ASP THR THR ILE MET ALA LYS ASN GLU SEQRES 12 A 570 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 A 570 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 A 570 CYS GLU LYS MET ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 A 570 PRO GLN VAL VAL MET GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 A 570 SER PRO GLY GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 A 570 LYS SER LYS LYS ASN PRO MET GLY PHE SER TYR ASP THR SEQRES 18 A 570 ARG CYS PHE ASP SER THR VAL THR GLU ASN ASP ILE ARG SEQRES 19 A 570 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 A 570 GLU ALA ARG GLN ALA ILE LYS SER LEU THR GLU ARG LEU SEQRES 21 A 570 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 A 570 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 A 570 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 A 570 SER ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 A 570 MET LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 A 570 SER ALA GLY VAL GLN GLU ASP ALA ALA SER LEU ARG VAL SEQRES 27 A 570 PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 A 570 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 A 570 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 A 570 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 A 570 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 A 570 PRO VAL ASN SER TRP LEU GLY ASN ILE ILE MET TYR ALA SEQRES 33 A 570 PRO THR LEU TRP ALA ARG MET ILE LEU MET THR HIS PHE SEQRES 34 A 570 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLU LYS ALA SEQRES 35 A 570 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 A 570 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 A 570 LEU SER ALA PHE SER LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 A 570 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 A 570 PRO PRO LEU ARG VAL TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 A 570 ARG ALA ARG LEU LEU SER GLN GLY GLY ARG ALA ALA THR SEQRES 41 A 570 CYS GLY LYS TYR LEU PHE ASN TRP ALA VAL LYS THR LYS SEQRES 42 A 570 LEU LYS LEU THR PRO ILE PRO ALA ALA SER GLN LEU ASP SEQRES 43 A 570 LEU SER SER TRP PHE VAL ALA GLY TYR SER GLY GLY ASP SEQRES 44 A 570 ILE TYR HIS SER LEU SER ARG ALA ARG PRO ARG SEQRES 1 B 570 SER MET SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 B 570 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN ALA LEU SEQRES 3 B 570 SER ASN SER LEU LEU ARG HIS HIS ASN MET VAL TYR ALA SEQRES 4 B 570 THR THR SER ARG SER ALA SER LEU ARG GLN LYS LYS VAL SEQRES 5 B 570 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 B 570 ASP VAL LEU LYS GLU MET LYS ALA LYS ALA SER THR VAL SEQRES 7 B 570 LYS ALA LYS LEU LEU SER VAL GLU GLU ALA CYS LYS LEU SEQRES 8 B 570 THR PRO PRO HIS SER ALA LYS SER LYS PHE GLY TYR GLY SEQRES 9 B 570 ALA LYS ASP VAL ARG ASN LEU SER SER LYS ALA VAL ASN SEQRES 10 B 570 HIS ILE HIS SER VAL TRP LYS ASP LEU LEU GLU ASP THR SEQRES 11 B 570 VAL THR PRO ILE ASP THR THR ILE MET ALA LYS ASN GLU SEQRES 12 B 570 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 B 570 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 B 570 CYS GLU LYS MET ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 B 570 PRO GLN VAL VAL MET GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 B 570 SER PRO GLY GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 B 570 LYS SER LYS LYS ASN PRO MET GLY PHE SER TYR ASP THR SEQRES 18 B 570 ARG CYS PHE ASP SER THR VAL THR GLU ASN ASP ILE ARG SEQRES 19 B 570 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 B 570 GLU ALA ARG GLN ALA ILE LYS SER LEU THR GLU ARG LEU SEQRES 21 B 570 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 B 570 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 B 570 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 B 570 SER ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 B 570 MET LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 B 570 SER ALA GLY VAL GLN GLU ASP ALA ALA SER LEU ARG VAL SEQRES 27 B 570 PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 B 570 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 B 570 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 B 570 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 B 570 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 B 570 PRO VAL ASN SER TRP LEU GLY ASN ILE ILE MET TYR ALA SEQRES 33 B 570 PRO THR LEU TRP ALA ARG MET ILE LEU MET THR HIS PHE SEQRES 34 B 570 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLU LYS ALA SEQRES 35 B 570 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 B 570 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 B 570 LEU SER ALA PHE SER LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 B 570 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 B 570 PRO PRO LEU ARG VAL TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 B 570 ARG ALA ARG LEU LEU SER GLN GLY GLY ARG ALA ALA THR SEQRES 41 B 570 CYS GLY LYS TYR LEU PHE ASN TRP ALA VAL LYS THR LYS SEQRES 42 B 570 LEU LYS LEU THR PRO ILE PRO ALA ALA SER GLN LEU ASP SEQRES 43 B 570 LEU SER SER TRP PHE VAL ALA GLY TYR SER GLY GLY ASP SEQRES 44 B 570 ILE TYR HIS SER LEU SER ARG ALA ARG PRO ARG HET 698 A 600 32 HET 698 B 600 32 HETNAM 698 (2S,4S,5R)-1-(4-TERT-BUTYLBENZOYL)-2- HETNAM 2 698 ISOBUTYL-5-(1,3-THIAZOL-2-YL)PYRROLIDINE-2,4- HETNAM 3 698 DICARBOXYLIC ACID FORMUL 3 698 2() FORMUL 5 HOH *654(H2 O1) HELIX 1 1 LEU A 26 LEU A 31 1 6 HELIX 2 2 HIS A 33 ASN A 35 5 3 HELIX 3 3 THR A 41 ARG A 43 5 3 HELIX 4 4 SER A 44 THR A 53 1 10 HELIX 5 5 ASP A 61 SER A 76 1 16 HELIX 6 6 SER A 84 LEU A 91 1 8 HELIX 7 7 GLY A 104 ASN A 110 1 7 HELIX 8 8 SER A 112 ASP A 129 1 18 HELIX 9 9 ASP A 164 GLY A 188 1 25 HELIX 10 10 GLY A 192 TYR A 195 5 4 HELIX 11 11 SER A 196 SER A 210 1 15 HELIX 12 12 CYS A 223 VAL A 228 1 6 HELIX 13 13 THR A 229 GLN A 241 1 13 HELIX 14 14 ALA A 246 LEU A 260 1 15 HELIX 15 15 THR A 286 ALA A 306 1 21 HELIX 16 16 GLY A 328 TYR A 346 1 19 HELIX 17 17 ASP A 359 ILE A 363 5 5 HELIX 18 18 PRO A 388 ARG A 401 1 14 HELIX 19 19 ASN A 406 TYR A 415 1 10 HELIX 20 20 THR A 418 ILE A 424 1 7 HELIX 21 21 ILE A 424 GLN A 436 1 13 HELIX 22 22 GLU A 455 LEU A 457 5 3 HELIX 23 23 ASP A 458 GLY A 468 1 11 HELIX 24 24 LEU A 469 SER A 473 5 5 HELIX 25 25 SER A 478 GLY A 493 1 16 HELIX 26 26 PRO A 496 SER A 513 1 18 HELIX 27 27 GLY A 515 PHE A 526 1 12 HELIX 28 28 ASN A 527 VAL A 530 5 4 HELIX 29 29 LEU B 26 LEU B 31 1 6 HELIX 30 30 HIS B 33 ASN B 35 5 3 HELIX 31 31 THR B 41 ARG B 43 5 3 HELIX 32 32 SER B 44 THR B 53 1 10 HELIX 33 33 ASP B 61 SER B 76 1 16 HELIX 34 34 SER B 84 LEU B 91 1 8 HELIX 35 35 GLY B 104 ASN B 110 1 7 HELIX 36 36 SER B 112 ASP B 129 1 18 HELIX 37 37 ASP B 164 GLY B 188 1 25 HELIX 38 38 GLY B 192 TYR B 195 5 4 HELIX 39 39 SER B 196 SER B 210 1 15 HELIX 40 40 CYS B 223 VAL B 228 1 6 HELIX 41 41 THR B 229 CYS B 242 1 14 HELIX 42 42 ALA B 246 LEU B 260 1 15 HELIX 43 43 THR B 286 LYS B 307 1 22 HELIX 44 44 GLY B 328 TYR B 346 1 19 HELIX 45 45 ASP B 359 ILE B 363 5 5 HELIX 46 46 PRO B 388 ARG B 401 1 14 HELIX 47 47 ASN B 406 TYR B 415 1 10 HELIX 48 48 THR B 418 ILE B 424 1 7 HELIX 49 49 ILE B 424 GLU B 437 1 14 HELIX 50 50 GLU B 455 LEU B 457 5 3 HELIX 51 51 ASP B 458 GLY B 468 1 11 HELIX 52 52 LEU B 469 SER B 473 5 5 HELIX 53 53 SER B 478 GLY B 493 1 16 HELIX 54 54 PRO B 496 GLY B 515 1 20 HELIX 55 55 GLY B 515 PHE B 526 1 12 HELIX 56 56 ASN B 527 VAL B 530 5 4 SHEET 1 AA 5 TYR A 4 TRP A 6 0 SHEET 2 AA 5 ASN A 273 ARG A 277 -1 O TYR A 276 N THR A 5 SHEET 3 AA 5 GLY A 264 THR A 267 -1 O GLY A 264 N ARG A 277 SHEET 4 AA 5 THR A 136 ALA A 140 1 O THR A 136 N THR A 267 SHEET 5 AA 5 LEU A 159 PHE A 162 -1 O ILE A 160 N MET A 139 SHEET 1 AB 2 VAL A 37 ALA A 39 0 SHEET 2 AB 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 AC 4 GLN A 309 ASN A 316 0 SHEET 2 AC 4 ASP A 319 GLU A 325 -1 O ASP A 319 N ASN A 316 SHEET 3 AC 4 PRO A 214 THR A 221 -1 O MET A 215 N CYS A 324 SHEET 4 AC 4 PRO A 350 ASP A 352 -1 N GLY A 351 O ASP A 220 SHEET 1 AD 2 ASN A 369 HIS A 374 0 SHEET 2 AD 2 ARG A 380 THR A 385 -1 O VAL A 381 N ALA A 373 SHEET 1 AE 2 LEU A 443 ILE A 447 0 SHEET 2 AE 2 ALA A 450 ILE A 454 -1 O ALA A 450 N ILE A 447 SHEET 1 BA 5 TYR B 4 TRP B 6 0 SHEET 2 BA 5 ASN B 273 ARG B 277 -1 O TYR B 276 N THR B 5 SHEET 3 BA 5 GLY B 264 THR B 267 -1 O GLY B 264 N ARG B 277 SHEET 4 BA 5 THR B 136 ALA B 140 1 O THR B 136 N THR B 267 SHEET 5 BA 5 LEU B 159 PHE B 162 -1 O ILE B 160 N MET B 139 SHEET 1 BB 2 VAL B 37 ALA B 39 0 SHEET 2 BB 2 VAL B 144 CYS B 146 -1 O PHE B 145 N TYR B 38 SHEET 1 BC 3 PRO B 214 TYR B 219 0 SHEET 2 BC 3 ASP B 319 GLU B 325 -1 O LEU B 320 N TYR B 219 SHEET 3 BC 3 GLN B 309 ASN B 316 -1 O GLN B 309 N GLU B 325 SHEET 1 BD 2 ASN B 369 HIS B 374 0 SHEET 2 BD 2 ARG B 380 THR B 385 -1 O VAL B 381 N ALA B 373 SHEET 1 BE 2 LEU B 443 ILE B 447 0 SHEET 2 BE 2 ALA B 450 ILE B 454 -1 O ALA B 450 N ILE B 447 SITE 1 AC1 13 CYS A 366 SER A 368 SER A 407 GLY A 410 SITE 2 AC1 13 ASN A 411 MET A 414 TYR A 415 GLN A 446 SITE 3 AC1 13 ILE A 447 TYR A 448 GLY A 449 HOH A2248 SITE 4 AC1 13 HOH A2275 SITE 1 AC2 13 ARG B 200 CYS B 366 SER B 368 SER B 407 SITE 2 AC2 13 GLY B 410 ASN B 411 MET B 414 TYR B 415 SITE 3 AC2 13 GLN B 446 TYR B 448 GLY B 449 HOH B2235 SITE 4 AC2 13 HOH B2248 CRYST1 86.240 106.260 126.400 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007911 0.00000