HEADER TRANSFERASE 22-DEC-06 2JCF OBSLTE 13-NOV-07 2JCF 2VFZ TITLE CRYSTAL STRUCTURE OF ALPHA-1,3 GALACTOSYLTRANSFERASE TITLE 2 (R365K) IN COMPLEX WITH UDP-2F-GALACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYL COMPND 3 TRANSFERASE; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 80-368; COMPND 6 SYNONYM: GALACTOSYLTRANSFERASE, UDP-GALACTOSE:BETA-D- COMPND 7 GALACTOSYL-1,4-N-ACETYL- D-GLUCOSAMINIDE ALPHA-1,3- COMPND 8 GALACTOSYLTRANSFERASE, ALPHA-1,3 GALACTOSYL TRANSFERASE; COMPND 9 EC: 2.4.1.151, 2.4.1.87; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 OTHER_DETAILS: URIDINE-5'-DIPHOSPHATE-2-DEOXY-2- COMPND 13 FLUOROGALACTOSE MANGANESE ION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS GALACTOSYLTRANSFERASE, TRANSMEMBRANE, GOLGI APPARATUS, KEYWDS 2 ENZYME MECHANISM, GLYCOPROTEIN, METAL-BINDING, SIGNAL- KEYWDS 3 ANCHOR, ALPHA-1, MEMBRANE, MANGANESE, TRANSFERASE, KEYWDS 4 GLYCOSYLTRANSFERASE, SUBSTRATE SPECIFICITY EXPDTA X-RAY DIFFRACTION AUTHOR H.JAMALUDDIN,P.TUMBALE,S.G.WITHERS,K.R.ACHARYA,K.BREW REVDAT 2 13-NOV-07 2JCF 1 OBSLTE REVDAT 1 22-MAY-07 2JCF 0 JRNL AUTH H.JAMALUDDIN,P.TUMBALE,S.G.WITHERS,K.R.ACHARYA, JRNL AUTH 2 K.BREW JRNL TITL CONFORMATIONAL CHANGES INDUCED BY BINDING JRNL TITL 2 UDP-2F-GALACTOSE TO ALPHA-1,3 JRNL TITL 3 GALACTOSYLTRANSFERASE-IMPLICATIONS FOR CATALYSIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 23879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1155 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.88000 REMARK 3 B22 (A**2) : 4.99000 REMARK 3 B33 (A**2) : -2.11000 REMARK 3 B12 (A**2) : -5.53000 REMARK 3 B13 (A**2) : 6.97000 REMARK 3 B23 (A**2) : -15.19000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.81 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 56.22 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : UPF-ONO-3-GOL.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUE B1363 MODELED AS GLYCINE REMARK 3 INSTEAD OF VALINE THE FOLLOWING RESIDUES IN CHAINS A AND B REMARK 3 WERE NOT MODELED IN THE STRUCTURE DUE TO ABSENCE OF ELECTRON REMARK 3 DENSITY - A80-A81, A360-A368, B80-B82, B364-B368 REMARK 4 REMARK 4 2JCF COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.101 (2007-05-31) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI . REMARK 100 THE EBI ID CODE IS EBI-30906 . REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-2005 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27634 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.13000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1K4V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 6000, 0.1M TRIS-HCL, PH 8.0 REMARK 280 AND 12-20% MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Y, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 80 REMARK 465 SER A 81 REMARK 465 GLU A 360 REMARK 465 TYR A 361 REMARK 465 ASN A 362 REMARK 465 VAL A 363 REMARK 465 VAL A 364 REMARK 465 LYS A 365 REMARK 465 ASN A 366 REMARK 465 ASN A 367 REMARK 465 VAL A 368 REMARK 465 GLU B 1080 REMARK 465 SER B 1081 REMARK 465 LYS B 1082 REMARK 465 LYS B 1365 REMARK 465 ASN B 1366 REMARK 465 ASN B 1367 REMARK 465 VAL B 1368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B1363 CB CG1 CG2 REMARK 470 VAL B1364 CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O HOH Z 124 O HOH Z 125 2.08 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 154 C HIS A 154 O -0.147 REMARK 500 PHE A 155 CZ PHE A 155 CE2 -0.208 REMARK 500 HIS A 315 C HIS A 315 O -0.175 REMARK 500 SER B1086 C SER B1086 O -0.166 REMARK 500 TRP B1088 C TRP B1088 O -0.143 REMARK 500 PHE B1089 CD1 PHE B1089 CE1 -0.154 REMARK 500 PHE B1089 CE1 PHE B1089 CZ -0.165 REMARK 500 PHE B1089 CZ PHE B1089 CE2 -0.153 REMARK 500 GLN B1125 CD GLN B1125 NE2 -0.138 REMARK 500 TYR B1143 C TYR B1143 O -0.218 REMARK 500 HIS B1154 C HIS B1154 O -0.151 REMARK 500 ARG B1172 CG ARG B1172 CD -0.209 REMARK 500 HIS B1213 C HIS B1213 O -0.168 REMARK 500 ARG B1262 CB ARG B1262 CG -0.195 REMARK 500 ARG B1262 CG ARG B1262 CD -0.156 REMARK 500 PHE B1272 CD1 PHE B1272 CE1 -0.193 REMARK 500 PHE B1272 CE1 PHE B1272 CZ -0.141 REMARK 500 PHE B1272 CZ PHE B1272 CE2 -0.251 REMARK 500 PHE B1272 C PHE B1272 O -0.164 REMARK 500 THR B1295 CB THR B1295 CG2 -0.346 REMARK 500 THR B1295 C THR B1295 O -0.177 REMARK 500 GLN B1296 N GLN B1296 CA -0.143 REMARK 500 GLU B1297 CG GLU B1297 CD -0.216 REMARK 500 GLU B1297 CD GLU B1297 OE2 -0.139 REMARK 500 GLU B1297 C GLU B1297 O -0.142 REMARK 500 PHE B1299 CG PHE B1299 CD2 -0.141 REMARK 500 PHE B1299 CE1 PHE B1299 CZ -0.204 REMARK 500 LYS B1300 N LYS B1300 CA -0.152 REMARK 500 LYS B1300 CB LYS B1300 CG -0.153 REMARK 500 LYS B1300 CG LYS B1300 CD -0.203 REMARK 500 LYS B1300 CD LYS B1300 CE -0.195 REMARK 500 GLY B1301 C GLY B1301 O -0.191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 107 N - CA - C ANGL. DEV. = -9.4 DEGREES REMARK 500 HIS A 154 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 PHE A 155 N - CA - C ANGL. DEV. = 11.2 DEGREES REMARK 500 PHE A 155 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 HIS B1213 N - CA - C ANGL. DEV. = 9.2 DEGREES REMARK 500 TRP B1250 N - CA - C ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG B1262 CA - CB - CG ANGL. DEV. = 11.2 DEGREES REMARK 500 GLN B1296 CA - CB - CG ANGL. DEV. = 9.4 DEGREES REMARK 500 GLU B1297 N - CA - C ANGL. DEV. = 9.6 DEGREES REMARK 500 LYS B1300 N - CA - CB ANGL. DEV. =-12.8 DEGREES REMARK 500 LYS B1300 N - CA - C ANGL. DEV. = 10.7 DEGREES REMARK 500 GLY B1301 N - CA - C ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 142 TYR A 143 -143.45 REMARK 500 PHE A 234 GLY A 235 -146.54 REMARK 500 PHE B 1234 GLY B 1235 -148.29 REMARK 500 LYS B 1300 GLY B 1301 132.95 REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH Z 38 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH Z 39 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH Z 43 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH Z 47 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH Z 48 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH Z 49 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH Z 59 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH Y 62 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH Z 66 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH Y 67 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH Y 72 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH Y 82 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH Y 83 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH Y 86 DISTANCE = 5.62 ANGSTROMS REMARK 525 HOH Z 97 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH Z 101 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH Z 105 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH Y 111 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH Y 115 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH Y 118 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH Y 120 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH Y 129 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH Z 131 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH Y 136 DISTANCE = 8.34 ANGSTROMS REMARK 525 HOH Y 140 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH Y 141 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH Y 142 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH Z 143 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH Y 145 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH Y 146 DISTANCE = 10.04 ANGSTROMS REMARK 525 HOH Y 147 DISTANCE = 8.66 ANGSTROMS REMARK 525 HOH Y 157 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH Y 161 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH Y 167 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH Y 168 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH Y 169 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH Y 207 DISTANCE = 6.73 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 SITE_DESCRIPTION: MN BINDING SITE FOR CHAIN A DBREF 2JCF A 80 368 UNP P14769 GGTA1_BOVIN 80 368 DBREF 2JCF B 1080 1368 UNP P14769 GGTA1_BOVIN 80 368 SEQADV 2JCF LYS A 365 UNP P14769 ARG 365 ENGINEERED MUTATION SEQADV 2JCF LYS B 1365 UNP P14769 ARG 365 ENGINEERED MUTATION SEQRES 1 A 289 GLU SER LYS LEU LYS LEU SER ASP TRP PHE ASN PRO PHE SEQRES 2 A 289 LYS ARG PRO GLU VAL VAL THR MET THR LYS TRP LYS ALA SEQRES 3 A 289 PRO VAL VAL TRP GLU GLY THR TYR ASN ARG ALA VAL LEU SEQRES 4 A 289 ASP ASN TYR TYR ALA LYS GLN LYS ILE THR VAL GLY LEU SEQRES 5 A 289 THR VAL PHE ALA VAL GLY ARG TYR ILE GLU HIS TYR LEU SEQRES 6 A 289 GLU GLU PHE LEU THR SER ALA ASN LYS HIS PHE MET VAL SEQRES 7 A 289 GLY HIS PRO VAL ILE PHE TYR ILE MET VAL ASP ASP VAL SEQRES 8 A 289 SER ARG MET PRO LEU ILE GLU LEU GLY PRO LEU ARG SER SEQRES 9 A 289 PHE LYS VAL PHE LYS ILE LYS PRO GLU LYS ARG TRP GLN SEQRES 10 A 289 ASP ILE SER MET MET ARG MET LYS THR ILE GLY GLU HIS SEQRES 11 A 289 ILE VAL ALA HIS ILE GLN HIS GLU VAL ASP PHE LEU PHE SEQRES 12 A 289 CYS MET ASP VAL ASP GLN VAL PHE GLN ASP LYS PHE GLY SEQRES 13 A 289 VAL GLU THR LEU GLY GLU SER VAL ALA GLN LEU GLN ALA SEQRES 14 A 289 TRP TRP TYR LYS ALA ASP PRO ASN ASP PHE THR TYR GLU SEQRES 15 A 289 ARG ARG LYS GLU SER ALA ALA TYR ILE PRO PHE GLY GLU SEQRES 16 A 289 GLY ASP PHE TYR TYR HIS ALA ALA ILE PHE GLY GLY THR SEQRES 17 A 289 PRO THR GLN VAL LEU ASN ILE THR GLN GLU CYS PHE LYS SEQRES 18 A 289 GLY ILE LEU LYS ASP LYS LYS ASN ASP ILE GLU ALA GLN SEQRES 19 A 289 TRP HIS ASP GLU SER HIS LEU ASN LYS TYR PHE LEU LEU SEQRES 20 A 289 ASN LYS PRO THR LYS ILE LEU SER PRO GLU TYR CYS TRP SEQRES 21 A 289 ASP TYR HIS ILE GLY LEU PRO ALA ASP ILE LYS LEU VAL SEQRES 22 A 289 LYS MET SER TRP GLN THR LYS GLU TYR ASN VAL VAL LYS SEQRES 23 A 289 ASN ASN VAL SEQRES 1 B 289 GLU SER LYS LEU LYS LEU SER ASP TRP PHE ASN PRO PHE SEQRES 2 B 289 LYS ARG PRO GLU VAL VAL THR MET THR LYS TRP LYS ALA SEQRES 3 B 289 PRO VAL VAL TRP GLU GLY THR TYR ASN ARG ALA VAL LEU SEQRES 4 B 289 ASP ASN TYR TYR ALA LYS GLN LYS ILE THR VAL GLY LEU SEQRES 5 B 289 THR VAL PHE ALA VAL GLY ARG TYR ILE GLU HIS TYR LEU SEQRES 6 B 289 GLU GLU PHE LEU THR SER ALA ASN LYS HIS PHE MET VAL SEQRES 7 B 289 GLY HIS PRO VAL ILE PHE TYR ILE MET VAL ASP ASP VAL SEQRES 8 B 289 SER ARG MET PRO LEU ILE GLU LEU GLY PRO LEU ARG SER SEQRES 9 B 289 PHE LYS VAL PHE LYS ILE LYS PRO GLU LYS ARG TRP GLN SEQRES 10 B 289 ASP ILE SER MET MET ARG MET LYS THR ILE GLY GLU HIS SEQRES 11 B 289 ILE VAL ALA HIS ILE GLN HIS GLU VAL ASP PHE LEU PHE SEQRES 12 B 289 CYS MET ASP VAL ASP GLN VAL PHE GLN ASP LYS PHE GLY SEQRES 13 B 289 VAL GLU THR LEU GLY GLU SER VAL ALA GLN LEU GLN ALA SEQRES 14 B 289 TRP TRP TYR LYS ALA ASP PRO ASN ASP PHE THR TYR GLU SEQRES 15 B 289 ARG ARG LYS GLU SER ALA ALA TYR ILE PRO PHE GLY GLU SEQRES 16 B 289 GLY ASP PHE TYR TYR HIS ALA ALA ILE PHE GLY GLY THR SEQRES 17 B 289 PRO THR GLN VAL LEU ASN ILE THR GLN GLU CYS PHE LYS SEQRES 18 B 289 GLY ILE LEU LYS ASP LYS LYS ASN ASP ILE GLU ALA GLN SEQRES 19 B 289 TRP HIS ASP GLU SER HIS LEU ASN LYS TYR PHE LEU LEU SEQRES 20 B 289 ASN LYS PRO THR LYS ILE LEU SER PRO GLU TYR CYS TRP SEQRES 21 B 289 ASP TYR HIS ILE GLY LEU PRO ALA ASP ILE LYS LEU VAL SEQRES 22 B 289 LYS MET SER TRP GLN THR LYS GLU TYR ASN VAL VAL LYS SEQRES 23 B 289 ASN ASN VAL HET MN A1362 1 HET MN B2366 1 HET UP1 A1361 36 HET UP1 B2365 36 HET GOL B2367 6 HETNAM MN MANGANESE (II) ION HETNAM UP1 URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE HETNAM GOL GLYCEROL FORMUL 3 MN 2(MN 2+) FORMUL 5 UP1 2(C15 H23 F N2 O16 P2) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *510(H2 O) HELIX 1 1 LYS A 84 PHE A 89 1 6 HELIX 2 2 ASN A 90 ARG A 94 5 5 HELIX 3 3 ASN A 114 LYS A 126 1 13 HELIX 4 4 ARG A 138 PHE A 155 1 18 HELIX 5 5 ASP A 169 MET A 173 5 5 HELIX 6 6 ARG A 194 HIS A 213 1 20 HELIX 7 7 ILE A 214 GLU A 217 5 4 HELIX 8 8 GLY A 235 LEU A 239 5 5 HELIX 9 9 ASP A 254 PHE A 258 5 5 HELIX 10 10 THR A 287 ASN A 308 1 22 HELIX 11 11 TRP A 314 ASN A 327 1 14 HELIX 12 12 PRO A 335 CYS A 338 5 4 HELIX 13 13 ASP A 340 GLY A 344 5 5 HELIX 14 14 ASN B 1114 GLN B 1125 1 12 HELIX 15 15 ARG B 1138 PHE B 1155 1 18 HELIX 16 16 ASP B 1169 MET B 1173 5 5 HELIX 17 17 ARG B 1194 HIS B 1213 1 20 HELIX 18 18 HIS B 1213 VAL B 1218 1 6 HELIX 19 19 GLY B 1235 LEU B 1239 5 5 HELIX 20 20 ASP B 1254 PHE B 1258 5 5 HELIX 21 21 THR B 1287 ASN B 1308 1 22 HELIX 22 22 TRP B 1314 ASN B 1327 1 14 HELIX 23 23 PRO B 1335 CYS B 1338 5 4 HELIX 24 24 ASP B 1340 GLY B 1344 5 5 SHEET 1 AA 8 VAL A 107 VAL A 108 0 SHEET 2 AA 8 LYS A 331 LEU A 333 1 O ILE A 332 N VAL A 108 SHEET 3 AA 8 SER A 242 GLN A 245 1 O ALA A 244 N LEU A 333 SHEET 4 AA 8 ILE A 283 GLY A 286 -1 O GLY A 285 N VAL A 243 SHEET 5 AA 8 PHE A 220 MET A 224 -1 O LEU A 221 N GLY A 286 SHEET 6 AA 8 VAL A 129 ALA A 135 1 O GLY A 130 N PHE A 222 SHEET 7 AA 8 VAL A 161 VAL A 167 1 O ILE A 162 N LEU A 131 SHEET 8 AA 8 ARG A 182 LYS A 188 1 O SER A 183 N PHE A 163 SHEET 1 AB 2 GLN A 228 PHE A 230 0 SHEET 2 AB 2 MET A 354 TRP A 356 -1 O SER A 355 N VAL A 229 SHEET 1 BA 8 VAL B1107 VAL B1108 0 SHEET 2 BA 8 LYS B1331 LEU B1333 1 O ILE B1332 N VAL B1108 SHEET 3 BA 8 SER B1242 LEU B1246 1 O ALA B1244 N LEU B1333 SHEET 4 BA 8 TYR B1279 GLY B1286 -1 N HIS B1280 O GLN B1245 SHEET 5 BA 8 PHE B1220 MET B1224 -1 O LEU B1221 N GLY B1286 SHEET 6 BA 8 VAL B1129 ALA B1135 1 O GLY B1130 N PHE B1222 SHEET 7 BA 8 VAL B1161 VAL B1167 1 O ILE B1162 N LEU B1131 SHEET 8 BA 8 ARG B1182 LYS B1188 1 O SER B1183 N PHE B1163 SHEET 1 BB 2 GLN B1228 PHE B1230 0 SHEET 2 BB 2 MET B1354 TRP B1356 -1 O SER B1355 N VAL B1229 LINK MN MN A1362 OD1 ASP A 227 LINK MN MN A1362 O2A UP1 A1361 LINK MN MN A1362 OD2 ASP A 225 LINK MN MN A1362 O HOH Z 255 LINK MN MN A1362 OD2 ASP A 227 LINK MN MN A1362 O1B UP1 A1361 LINK MN MN B2366 O HOH Y 254 LINK MN MN B2366 OD2 ASP B1225 LINK MN MN B2366 OD1 ASP B1227 LINK MN MN B2366 O2A UP1 B2365 LINK MN MN B2366 O1B UP1 B2365 LINK MN MN B2366 OD2 ASP B1227 SITE 1 AC1 15 PHE A 134 TYR A 139 ILE A 198 SER A 199 SITE 2 AC1 15 ARG A 202 ASP A 225 ASP A 227 HIS A 280 SITE 3 AC1 15 ALA A 281 ALA A 282 HIS A 315 ASP A 316 SITE 4 AC1 15 GLU A 317 LYS A 359 HOH Z 56 SITE 1 AC2 4 ASP A 225 ASP A 227 LYS A 359 HOH Z 255 SITE 1 AC3 17 PHE A 92 PHE B1134 ALA B1135 TYR B1139 SITE 2 AC3 17 TRP B1195 ILE B1198 SER B1199 ARG B1202 SITE 3 AC3 17 ASP B1225 ASP B1227 HIS B1280 ALA B1281 SITE 4 AC3 17 ALA B1282 HIS B1315 ASP B1316 GLU B1317 SITE 5 AC3 17 LYS B1359 SITE 1 AC4 3 ASP B1225 ASP B1227 HOH Y 254 SITE 1 AC5 4 TYR B1341 LYS B1350 LEU B1351 HOH Y 235 CRYST1 44.735 64.759 66.468 83.34 83.95 70.14 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022354 -0.008074 -0.001683 0.00000 SCALE2 0.000000 0.016418 -0.001413 0.00000 SCALE3 0.000000 0.000000 0.015185 0.00000 MTRIX1 1 -1.000000 -0.000720 -0.001810 -0.24352 1 MTRIX2 1 0.001780 0.044030 -0.999030 -28.69636 1 MTRIX3 1 0.000800 -0.999030 -0.044030 -30.02458 1