data_2JCN # _entry.id 2JCN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.294 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JCN PDBE EBI-30940 WWPDB D_1290030940 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1BXL _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF BCL-XL/BAK PEPTIDE COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2JCN _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-12-27 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Moche, M.' 1 ? 'Stenmark, P.' 2 ? 'Arrowsmith, C.' 3 ? 'Berglund, H.' 4 ? 'Busam, R.' 5 ? 'Collins, R.' 6 ? 'Edwards, A.' 7 ? 'Ericsson, U.B.' 8 ? 'Flodin, S.' 9 ? 'Flores, A.' 10 ? 'Graslund, S.' 11 ? 'Hammarstrom, M.' 12 ? 'Hallberg, B.M.' 13 ? 'Holmberg Schiavone, L.' 14 ? 'Johansson, I.' 15 ? 'Karlberg, T.' 16 ? 'Kosinska, U.' 17 ? 'Kotenyova, T.' 18 ? 'Lundgren, S.' 19 ? 'Nilsson, M.E.' 20 ? 'Nyman, T.' 21 ? 'Ogg, D.' 22 ? 'Persson, C.' 23 ? 'Sagemark, J.' 24 ? 'Sundstrom, M.' 25 ? 'Uppenberg, J.' 26 ? 'Upsten, M.' 27 ? 'Thorsell, A.G.' 28 ? 'van den Berg, S.' 29 ? 'Weigelt, J.' 30 ? 'Nordlund, P.' 31 ? 'Structural Genomics Consortium (SGC)' 32 ? # _citation.id primary _citation.title 'The Crystal Structure of Bak1 - an Apoptosis Trigger in the Mitochondrial Outer Membrane' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Moche, M.' 1 primary 'Stenmark, P.' 2 primary 'Arrowsmith, C.' 3 primary 'Berglund, H.' 4 primary 'Busam, R.' 5 primary 'Collins, R.' 6 primary 'Edwards, A.' 7 primary 'Ericsson, U.B.' 8 primary 'Flodin, S.' 9 primary 'Flores, A.' 10 primary 'Graslund, S.' 11 primary 'Hammarstrom, M.' 12 primary 'Hallberg, B.M.' 13 primary 'Holmberg Schiavone, L.' 14 primary 'Johansson, I.' 15 primary 'Karlberg, T.' 16 primary 'Kosinska, U.' 17 primary 'Kotenyova, T.' 18 primary 'Lundgren, S.' 19 primary 'Nilsson, M.E.' 20 primary 'Nyman, T.' 21 primary 'Ogg, D.' 22 primary 'Persson, C.' 23 primary 'Sagemark, J.' 24 primary 'Sundstrom, M.' 25 primary 'Uppenberg, J.' 26 primary 'Upsten, M.' 27 primary 'Thorsell, A.G.' 28 primary 'Van Den Berg, S.' 29 primary 'Weigelt, J.' 30 primary 'Nordlund, P.' 31 # _cell.entry_id 2JCN _cell.length_a 62.770 _cell.length_b 62.770 _cell.length_c 138.070 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JCN _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BCL-2 HOMOLOGOUS ANTAGONIST/KILLER' 19324.699 1 ? ? ? 'RESIDUE 23-184 GAP AT 50-54' 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 89 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'APOPTOSIS REGULATOR BAK, BCL-2-LIKE 7 PROTEIN, BAK1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMSASEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPEMVTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQ HLQPTAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWV AALNLGNGPILN ; _entity_poly.pdbx_seq_one_letter_code_can ;SMSASEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPEMVTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQ HLQPTAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWV AALNLGNGPILN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 SER n 1 4 ALA n 1 5 SER n 1 6 GLU n 1 7 GLU n 1 8 GLN n 1 9 VAL n 1 10 ALA n 1 11 GLN n 1 12 ASP n 1 13 THR n 1 14 GLU n 1 15 GLU n 1 16 VAL n 1 17 PHE n 1 18 ARG n 1 19 SER n 1 20 TYR n 1 21 VAL n 1 22 PHE n 1 23 TYR n 1 24 ARG n 1 25 HIS n 1 26 GLN n 1 27 GLN n 1 28 GLU n 1 29 GLN n 1 30 GLU n 1 31 ALA n 1 32 GLU n 1 33 GLY n 1 34 VAL n 1 35 ALA n 1 36 ALA n 1 37 PRO n 1 38 ALA n 1 39 ASP n 1 40 PRO n 1 41 GLU n 1 42 MET n 1 43 VAL n 1 44 THR n 1 45 LEU n 1 46 PRO n 1 47 LEU n 1 48 GLN n 1 49 PRO n 1 50 SER n 1 51 SER n 1 52 THR n 1 53 MET n 1 54 GLY n 1 55 GLN n 1 56 VAL n 1 57 GLY n 1 58 ARG n 1 59 GLN n 1 60 LEU n 1 61 ALA n 1 62 ILE n 1 63 ILE n 1 64 GLY n 1 65 ASP n 1 66 ASP n 1 67 ILE n 1 68 ASN n 1 69 ARG n 1 70 ARG n 1 71 TYR n 1 72 ASP n 1 73 SER n 1 74 GLU n 1 75 PHE n 1 76 GLN n 1 77 THR n 1 78 MET n 1 79 LEU n 1 80 GLN n 1 81 HIS n 1 82 LEU n 1 83 GLN n 1 84 PRO n 1 85 THR n 1 86 ALA n 1 87 GLU n 1 88 ASN n 1 89 ALA n 1 90 TYR n 1 91 GLU n 1 92 TYR n 1 93 PHE n 1 94 THR n 1 95 LYS n 1 96 ILE n 1 97 ALA n 1 98 THR n 1 99 SER n 1 100 LEU n 1 101 PHE n 1 102 GLU n 1 103 SER n 1 104 GLY n 1 105 ILE n 1 106 ASN n 1 107 TRP n 1 108 GLY n 1 109 ARG n 1 110 VAL n 1 111 VAL n 1 112 ALA n 1 113 LEU n 1 114 LEU n 1 115 GLY n 1 116 PHE n 1 117 GLY n 1 118 TYR n 1 119 ARG n 1 120 LEU n 1 121 ALA n 1 122 LEU n 1 123 HIS n 1 124 VAL n 1 125 TYR n 1 126 GLN n 1 127 HIS n 1 128 GLY n 1 129 LEU n 1 130 THR n 1 131 GLY n 1 132 PHE n 1 133 LEU n 1 134 GLY n 1 135 GLN n 1 136 VAL n 1 137 THR n 1 138 ARG n 1 139 PHE n 1 140 VAL n 1 141 VAL n 1 142 ASP n 1 143 PHE n 1 144 MET n 1 145 LEU n 1 146 HIS n 1 147 HIS n 1 148 CYS n 1 149 ILE n 1 150 ALA n 1 151 ARG n 1 152 TRP n 1 153 ILE n 1 154 ALA n 1 155 GLN n 1 156 ARG n 1 157 GLY n 1 158 GLY n 1 159 TRP n 1 160 VAL n 1 161 ALA n 1 162 ALA n 1 163 LEU n 1 164 ASN n 1 165 LEU n 1 166 GLY n 1 167 ASN n 1 168 GLY n 1 169 PRO n 1 170 ILE n 1 171 LEU n 1 172 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PNIC28-BSA4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2JCN 1 ? ? 2JCN ? 2 UNP BAK_HUMAN 1 ? ? Q16611 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2JCN A 1 ? 2 ? 2JCN 19 ? 20 ? 19 20 2 2 2JCN A 3 ? 172 ? Q16611 21 ? 190 ? 21 190 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2JCN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_percent_sol 39.2 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '22% PEG3350, 20% GLYCEROL, 0.2M SODIUM SULPHATE, 2MM TCEP, 0.3M NACL, 20 MM HEPES PH7.5, pH 7.50' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2006-09-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength 0.933 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2JCN _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.800 _reflns.number_obs 313450 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.05000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 38.0000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 20.170 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.44000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.100 _reflns_shell.pdbx_redundancy 20.70 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2JCN _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 14832 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.69 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.189 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free 0.232 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 785 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.B_iso_mean 24.04 _refine.aniso_B[1][1] 0.28000 _refine.aniso_B[2][2] 0.28000 _refine.aniso_B[3][3] -0.42000 _refine.aniso_B[1][2] 0.14000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THERE IS A CYSTEINE S-S BRIDGE BETWEEN CYS166 AND CYS166 FROM A SYMMETRY MOLECULE ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.132 _refine.pdbx_overall_ESU_R_Free 0.130 _refine.overall_SU_ML 0.082 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.156 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1264 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 1358 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 19.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 1318 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1164 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.426 1.924 ? 1789 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.915 3.000 ? 2687 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.420 5.000 ? 159 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.478 23.472 ? 72 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.563 15.000 ? 209 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.117 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.103 0.200 ? 189 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1494 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 298 'X-RAY DIFFRACTION' ? r_nbd_refined 0.236 0.200 ? 296 'X-RAY DIFFRACTION' ? r_nbd_other 0.177 0.200 ? 1154 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.192 0.200 ? 671 'X-RAY DIFFRACTION' ? r_nbtor_other 0.086 0.200 ? 717 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.188 0.200 ? 56 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.342 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.248 0.200 ? 75 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.202 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.579 2.000 ? 1018 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.858 3.000 ? 1257 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.554 4.000 ? 629 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.412 5.000 ? 531 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.85 _refine_ls_shell.number_reflns_R_work 1064 _refine_ls_shell.R_factor_R_work 0.1830 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2360 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 2JCN _struct.title 'The crystal structure of BAK1 - a mitochondrial apoptosis regulator' _struct.pdbx_descriptor 'BCL-2 HOMOLOGOUS ANTAGONIST/KILLER' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JCN _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text 'APOPTOSIS, MITOCHONDRIAL OUTER MEMBRANE PERMEABILIZATION, OLIGOMERIZATION, CYTOCHROME C RELEASE, MEMBRANE, TRANSMEMBRANE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 5 ? GLU A 30 ? SER A 23 GLU A 48 1 ? 26 HELX_P HELX_P2 2 ASP A 39 ? VAL A 43 ? ASP A 57 VAL A 61 5 ? 5 HELX_P HELX_P3 3 SER A 51 ? GLY A 64 ? SER A 69 GLY A 82 1 ? 14 HELX_P HELX_P4 4 ASP A 66 ? GLN A 83 ? ASP A 84 GLN A 101 1 ? 18 HELX_P HELX_P5 5 ASN A 88 ? PHE A 101 ? ASN A 106 PHE A 119 1 ? 14 HELX_P HELX_P6 6 ASN A 106 ? HIS A 127 ? ASN A 124 HIS A 145 1 ? 22 HELX_P HELX_P7 7 PHE A 132 ? HIS A 147 ? PHE A 150 HIS A 165 1 ? 16 HELX_P HELX_P8 8 CYS A 148 ? ARG A 156 ? CYS A 166 ARG A 174 1 ? 9 HELX_P HELX_P9 9 GLY A 158 ? LEU A 165 ? GLY A 176 LEU A 183 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 148 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 166 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 166 _struct_conn.ptnr2_symmetry 10_665 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.219 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ASN A 106 ? ASN A 124 . ? 1_555 ? 2 AC1 9 TRP A 107 ? TRP A 125 . ? 1_555 ? 3 AC1 9 GLY A 134 ? GLY A 152 . ? 1_555 ? 4 AC1 9 ARG A 138 ? ARG A 156 . ? 1_555 ? 5 AC1 9 TRP A 152 ? TRP A 170 . ? 1_555 ? 6 AC1 9 ARG A 156 ? ARG A 174 . ? 1_555 ? 7 AC1 9 HOH C . ? HOH A 2054 . ? 1_555 ? 8 AC1 9 HOH C . ? HOH A 2067 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 2089 . ? 1_555 ? # _database_PDB_matrix.entry_id 2JCN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2JCN _atom_sites.fract_transf_matrix[1][1] 0.015931 _atom_sites.fract_transf_matrix[1][2] 0.009198 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018396 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007243 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 19 ? ? ? A . n A 1 2 MET 2 20 ? ? ? A . n A 1 3 SER 3 21 ? ? ? A . n A 1 4 ALA 4 22 ? ? ? A . n A 1 5 SER 5 23 23 SER SER A . n A 1 6 GLU 6 24 24 GLU GLU A . n A 1 7 GLU 7 25 25 GLU GLU A . n A 1 8 GLN 8 26 26 GLN GLN A . n A 1 9 VAL 9 27 27 VAL VAL A . n A 1 10 ALA 10 28 28 ALA ALA A . n A 1 11 GLN 11 29 29 GLN GLN A . n A 1 12 ASP 12 30 30 ASP ASP A . n A 1 13 THR 13 31 31 THR THR A . n A 1 14 GLU 14 32 32 GLU GLU A . n A 1 15 GLU 15 33 33 GLU GLU A . n A 1 16 VAL 16 34 34 VAL VAL A . n A 1 17 PHE 17 35 35 PHE PHE A . n A 1 18 ARG 18 36 36 ARG ARG A . n A 1 19 SER 19 37 37 SER SER A . n A 1 20 TYR 20 38 38 TYR TYR A . n A 1 21 VAL 21 39 39 VAL VAL A . n A 1 22 PHE 22 40 40 PHE PHE A . n A 1 23 TYR 23 41 41 TYR TYR A . n A 1 24 ARG 24 42 42 ARG ARG A . n A 1 25 HIS 25 43 43 HIS HIS A . n A 1 26 GLN 26 44 44 GLN GLN A . n A 1 27 GLN 27 45 45 GLN GLN A . n A 1 28 GLU 28 46 46 GLU GLU A . n A 1 29 GLN 29 47 47 GLN GLN A . n A 1 30 GLU 30 48 48 GLU GLU A . n A 1 31 ALA 31 49 49 ALA ALA A . n A 1 32 GLU 32 50 ? ? ? A . n A 1 33 GLY 33 51 ? ? ? A . n A 1 34 VAL 34 52 ? ? ? A . n A 1 35 ALA 35 53 ? ? ? A . n A 1 36 ALA 36 54 ? ? ? A . n A 1 37 PRO 37 55 55 PRO PRO A . n A 1 38 ALA 38 56 56 ALA ALA A . n A 1 39 ASP 39 57 57 ASP ASP A . n A 1 40 PRO 40 58 58 PRO PRO A . n A 1 41 GLU 41 59 59 GLU GLU A . n A 1 42 MET 42 60 60 MET MET A . n A 1 43 VAL 43 61 61 VAL VAL A . n A 1 44 THR 44 62 62 THR THR A . n A 1 45 LEU 45 63 63 LEU LEU A . n A 1 46 PRO 46 64 64 PRO PRO A . n A 1 47 LEU 47 65 65 LEU LEU A . n A 1 48 GLN 48 66 66 GLN GLN A . n A 1 49 PRO 49 67 67 PRO PRO A . n A 1 50 SER 50 68 68 SER SER A . n A 1 51 SER 51 69 69 SER SER A . n A 1 52 THR 52 70 70 THR THR A . n A 1 53 MET 53 71 71 MET MET A . n A 1 54 GLY 54 72 72 GLY GLY A . n A 1 55 GLN 55 73 73 GLN GLN A . n A 1 56 VAL 56 74 74 VAL VAL A . n A 1 57 GLY 57 75 75 GLY GLY A . n A 1 58 ARG 58 76 76 ARG ARG A . n A 1 59 GLN 59 77 77 GLN GLN A . n A 1 60 LEU 60 78 78 LEU LEU A . n A 1 61 ALA 61 79 79 ALA ALA A . n A 1 62 ILE 62 80 80 ILE ILE A . n A 1 63 ILE 63 81 81 ILE ILE A . n A 1 64 GLY 64 82 82 GLY GLY A . n A 1 65 ASP 65 83 83 ASP ASP A . n A 1 66 ASP 66 84 84 ASP ASP A . n A 1 67 ILE 67 85 85 ILE ILE A . n A 1 68 ASN 68 86 86 ASN ASN A . n A 1 69 ARG 69 87 87 ARG ARG A . n A 1 70 ARG 70 88 88 ARG ARG A . n A 1 71 TYR 71 89 89 TYR TYR A . n A 1 72 ASP 72 90 90 ASP ASP A . n A 1 73 SER 73 91 91 SER SER A . n A 1 74 GLU 74 92 92 GLU GLU A . n A 1 75 PHE 75 93 93 PHE PHE A . n A 1 76 GLN 76 94 94 GLN GLN A . n A 1 77 THR 77 95 95 THR THR A . n A 1 78 MET 78 96 96 MET MET A . n A 1 79 LEU 79 97 97 LEU LEU A . n A 1 80 GLN 80 98 98 GLN GLN A . n A 1 81 HIS 81 99 99 HIS HIS A . n A 1 82 LEU 82 100 100 LEU LEU A . n A 1 83 GLN 83 101 101 GLN GLN A . n A 1 84 PRO 84 102 102 PRO PRO A . n A 1 85 THR 85 103 103 THR THR A . n A 1 86 ALA 86 104 104 ALA ALA A . n A 1 87 GLU 87 105 105 GLU GLU A . n A 1 88 ASN 88 106 106 ASN ASN A . n A 1 89 ALA 89 107 107 ALA ALA A . n A 1 90 TYR 90 108 108 TYR TYR A . n A 1 91 GLU 91 109 109 GLU GLU A . n A 1 92 TYR 92 110 110 TYR TYR A . n A 1 93 PHE 93 111 111 PHE PHE A . n A 1 94 THR 94 112 112 THR THR A . n A 1 95 LYS 95 113 113 LYS LYS A . n A 1 96 ILE 96 114 114 ILE ILE A . n A 1 97 ALA 97 115 115 ALA ALA A . n A 1 98 THR 98 116 116 THR THR A . n A 1 99 SER 99 117 117 SER SER A . n A 1 100 LEU 100 118 118 LEU LEU A . n A 1 101 PHE 101 119 119 PHE PHE A . n A 1 102 GLU 102 120 120 GLU GLU A . n A 1 103 SER 103 121 121 SER SER A . n A 1 104 GLY 104 122 122 GLY GLY A . n A 1 105 ILE 105 123 123 ILE ILE A . n A 1 106 ASN 106 124 124 ASN ASN A . n A 1 107 TRP 107 125 125 TRP TRP A . n A 1 108 GLY 108 126 126 GLY GLY A . n A 1 109 ARG 109 127 127 ARG ARG A . n A 1 110 VAL 110 128 128 VAL VAL A . n A 1 111 VAL 111 129 129 VAL VAL A . n A 1 112 ALA 112 130 130 ALA ALA A . n A 1 113 LEU 113 131 131 LEU LEU A . n A 1 114 LEU 114 132 132 LEU LEU A . n A 1 115 GLY 115 133 133 GLY GLY A . n A 1 116 PHE 116 134 134 PHE PHE A . n A 1 117 GLY 117 135 135 GLY GLY A . n A 1 118 TYR 118 136 136 TYR TYR A . n A 1 119 ARG 119 137 137 ARG ARG A . n A 1 120 LEU 120 138 138 LEU LEU A . n A 1 121 ALA 121 139 139 ALA ALA A . n A 1 122 LEU 122 140 140 LEU LEU A . n A 1 123 HIS 123 141 141 HIS HIS A . n A 1 124 VAL 124 142 142 VAL VAL A . n A 1 125 TYR 125 143 143 TYR TYR A . n A 1 126 GLN 126 144 144 GLN GLN A . n A 1 127 HIS 127 145 145 HIS HIS A . n A 1 128 GLY 128 146 146 GLY GLY A . n A 1 129 LEU 129 147 147 LEU LEU A . n A 1 130 THR 130 148 148 THR THR A . n A 1 131 GLY 131 149 149 GLY GLY A . n A 1 132 PHE 132 150 150 PHE PHE A . n A 1 133 LEU 133 151 151 LEU LEU A . n A 1 134 GLY 134 152 152 GLY GLY A . n A 1 135 GLN 135 153 153 GLN GLN A . n A 1 136 VAL 136 154 154 VAL VAL A . n A 1 137 THR 137 155 155 THR THR A . n A 1 138 ARG 138 156 156 ARG ARG A . n A 1 139 PHE 139 157 157 PHE PHE A . n A 1 140 VAL 140 158 158 VAL VAL A . n A 1 141 VAL 141 159 159 VAL VAL A . n A 1 142 ASP 142 160 160 ASP ASP A . n A 1 143 PHE 143 161 161 PHE PHE A . n A 1 144 MET 144 162 162 MET MET A . n A 1 145 LEU 145 163 163 LEU LEU A . n A 1 146 HIS 146 164 164 HIS HIS A . n A 1 147 HIS 147 165 165 HIS HIS A . n A 1 148 CYS 148 166 166 CYS CYS A . n A 1 149 ILE 149 167 167 ILE ILE A . n A 1 150 ALA 150 168 168 ALA ALA A . n A 1 151 ARG 151 169 169 ARG ARG A . n A 1 152 TRP 152 170 170 TRP TRP A . n A 1 153 ILE 153 171 171 ILE ILE A . n A 1 154 ALA 154 172 172 ALA ALA A . n A 1 155 GLN 155 173 173 GLN GLN A . n A 1 156 ARG 156 174 174 ARG ARG A . n A 1 157 GLY 157 175 175 GLY GLY A . n A 1 158 GLY 158 176 176 GLY GLY A . n A 1 159 TRP 159 177 177 TRP TRP A . n A 1 160 VAL 160 178 178 VAL VAL A . n A 1 161 ALA 161 179 179 ALA ALA A . n A 1 162 ALA 162 180 180 ALA ALA A . n A 1 163 LEU 163 181 181 LEU LEU A . n A 1 164 ASN 164 182 182 ASN ASN A . n A 1 165 LEU 165 183 183 LEU LEU A . n A 1 166 GLY 166 184 184 GLY GLY A . n A 1 167 ASN 167 185 ? ? ? A . n A 1 168 GLY 168 186 ? ? ? A . n A 1 169 PRO 169 187 ? ? ? A . n A 1 170 ILE 170 188 ? ? ? A . n A 1 171 LEU 171 189 ? ? ? A . n A 1 172 ASN 172 190 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1001 1001 SO4 SO4 A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . C 3 HOH 71 2071 2071 HOH HOH A . C 3 HOH 72 2072 2072 HOH HOH A . C 3 HOH 73 2073 2073 HOH HOH A . C 3 HOH 74 2074 2074 HOH HOH A . C 3 HOH 75 2075 2075 HOH HOH A . C 3 HOH 76 2076 2076 HOH HOH A . C 3 HOH 77 2077 2077 HOH HOH A . C 3 HOH 78 2078 2078 HOH HOH A . C 3 HOH 79 2079 2079 HOH HOH A . C 3 HOH 80 2080 2080 HOH HOH A . C 3 HOH 81 2081 2081 HOH HOH A . C 3 HOH 82 2082 2082 HOH HOH A . C 3 HOH 83 2083 2083 HOH HOH A . C 3 HOH 84 2084 2084 HOH HOH A . C 3 HOH 85 2085 2085 HOH HOH A . C 3 HOH 86 2086 2086 HOH HOH A . C 3 HOH 87 2087 2087 HOH HOH A . C 3 HOH 88 2088 2088 HOH HOH A . C 3 HOH 89 2089 2089 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2011 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-06-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category diffrn_radiation # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_diffrn_radiation.pdbx_diffrn_protocol' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 35.5270 27.3830 -5.1220 -0.0056 0.1187 0.0484 0.0100 -0.0038 -0.0159 2.5560 10.9955 4.1806 1.4965 0.2024 -1.3135 -0.1009 0.1839 0.0640 0.1673 0.2852 -0.2058 0.1307 0.0489 -0.1843 'X-RAY DIFFRACTION' 2 ? refined 37.3580 39.5800 -10.4990 0.0743 0.1497 0.1440 -0.1027 -0.0339 0.1302 7.6206 10.7749 2.9892 7.1317 -2.7905 -2.9763 -0.7559 0.9991 0.7434 -1.1564 0.9258 0.8575 0.0115 -0.4129 -0.1699 'X-RAY DIFFRACTION' 3 ? refined 27.7070 30.1760 -10.1100 -0.0146 0.1786 0.0685 0.0203 -0.0413 0.0059 6.2799 21.2239 8.3641 -7.2561 -3.8236 6.0718 0.1930 0.2660 0.2127 -0.3532 -0.3107 0.5335 -0.4685 -0.9315 0.1177 'X-RAY DIFFRACTION' 4 ? refined 30.9570 42.5030 7.2860 -0.0045 0.0284 0.0949 0.0365 0.1252 -0.0319 19.1112 5.1500 10.2383 0.3246 4.1716 2.3336 0.3894 0.0287 0.9808 -0.0690 -0.3036 0.5214 -0.7939 -0.9192 -0.0858 'X-RAY DIFFRACTION' 5 ? refined 36.5140 33.8290 5.8260 -0.0217 0.0758 0.0678 -0.0138 0.0302 -0.0307 4.0110 1.9382 3.4258 1.6568 -1.0928 -0.7364 0.2376 -0.3369 0.2432 0.1065 -0.0992 0.0836 -0.1577 0.1368 -0.1383 'X-RAY DIFFRACTION' 6 ? refined 27.7800 20.7470 0.7030 0.0323 0.0771 0.0715 -0.0439 -0.0033 0.0059 3.3233 2.1752 8.1485 0.0692 0.6798 -1.5338 -0.1462 0.1692 -0.0508 -0.0717 0.0338 0.0473 0.2264 -0.1826 0.1124 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 23 ? ? A 43 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 44 ? ? A 67 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 68 ? ? A 83 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 84 ? ? A 103 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 104 ? ? A 161 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 162 ? ? A 184 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.2.0005 ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? XSCALE 'data scaling' . ? 3 ? ? ? ? SOLVE phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 2JCN _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;COMPARED TO OUR CLONED AND TEV CLEAVED CONSTRUCT WE MISS 4AA IN THE N-TERMINUS AND 6AA IN THE C-TERMINUS. IN ADDITION WE HAVE A GAP BETWEEN RESIDUE 50-54 IN THIS STRUCTURE. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 121 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2051 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.97 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 57 ? ? -160.88 94.69 2 1 LEU A 65 ? ? -146.47 33.98 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 PRO A 64 ? ? LEU A 65 ? ? -117.80 2 1 GLY A 122 ? ? ILE A 123 ? ? 146.01 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 19 ? A SER 1 2 1 Y 1 A MET 20 ? A MET 2 3 1 Y 1 A SER 21 ? A SER 3 4 1 Y 1 A ALA 22 ? A ALA 4 5 1 Y 1 A GLU 50 ? A GLU 32 6 1 Y 1 A GLY 51 ? A GLY 33 7 1 Y 1 A VAL 52 ? A VAL 34 8 1 Y 1 A ALA 53 ? A ALA 35 9 1 Y 1 A ALA 54 ? A ALA 36 10 1 Y 1 A ASN 185 ? A ASN 167 11 1 Y 1 A GLY 186 ? A GLY 168 12 1 Y 1 A PRO 187 ? A PRO 169 13 1 Y 1 A ILE 188 ? A ILE 170 14 1 Y 1 A LEU 189 ? A LEU 171 15 1 Y 1 A ASN 190 ? A ASN 172 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #