HEADER APOPTOSIS 27-DEC-06 2JCN TITLE THE CRYSTAL STRUCTURE OF BAK1 - A MITOCHONDRIAL APOPTOSIS REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2 HOMOLOGOUS ANTAGONIST/KILLER; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: APOPTOSIS REGULATOR BAK, BCL-2-LIKE 7 PROTEIN, BAK1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: RESIDUE 23-184 GAP AT 50-54 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS APOPTOSIS, MITOCHONDRIAL OUTER MEMBRANE PERMEABILIZATION, KEYWDS 2 OLIGOMERIZATION, CYTOCHROME C RELEASE, MEMBRANE, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR M.MOCHE,P.STENMARK,C.ARROWSMITH,H.BERGLUND,R.BUSAM,R.COLLINS, AUTHOR 2 A.EDWARDS,U.B.ERICSSON,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 B.M.HALLBERG,L.HOLMBERG SCHIAVONE,I.JOHANSSON,T.KARLBERG,U.KOSINSKA, AUTHOR 4 T.KOTENYOVA,S.LUNDGREN,M.E.NILSSON,T.NYMAN,D.OGG,C.PERSSON, AUTHOR 5 J.SAGEMARK,M.SUNDSTROM,J.UPPENBERG,M.UPSTEN,A.G.THORSELL,S.VAN DEN AUTHOR 6 BERG,J.WEIGELT,P.NORDLUND,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 20-NOV-24 2JCN 1 REMARK REVDAT 5 13-JUN-18 2JCN 1 REMARK REVDAT 4 13-JUL-11 2JCN 1 VERSN REVDAT 3 24-FEB-09 2JCN 1 VERSN REVDAT 2 08-MAY-07 2JCN 1 AUTHOR REMARK REVDAT 1 04-JAN-07 2JCN 0 JRNL AUTH M.MOCHE,P.STENMARK,C.ARROWSMITH,H.BERGLUND,R.BUSAM, JRNL AUTH 2 R.COLLINS,A.EDWARDS,U.B.ERICSSON,S.FLODIN,A.FLORES, JRNL AUTH 3 S.GRASLUND,M.HAMMARSTROM,B.M.HALLBERG,L.HOLMBERG SCHIAVONE, JRNL AUTH 4 I.JOHANSSON,T.KARLBERG,U.KOSINSKA,T.KOTENYOVA,S.LUNDGREN, JRNL AUTH 5 M.E.NILSSON,T.NYMAN,D.OGG,C.PERSSON,J.SAGEMARK,M.SUNDSTROM, JRNL AUTH 6 J.UPPENBERG,M.UPSTEN,A.G.THORSELL,S.VAN DEN BERG,J.WEIGELT, JRNL AUTH 7 P.NORDLUND JRNL TITL THE CRYSTAL STRUCTURE OF BAK1 - AN APOPTOSIS TRIGGER IN THE JRNL TITL 2 MITOCHONDRIAL OUTER MEMBRANE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 785 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1064 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.156 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1318 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1164 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1789 ; 1.426 ; 1.924 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2687 ; 0.915 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 159 ; 7.420 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;33.478 ;23.472 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 209 ;15.563 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.117 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 189 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1494 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 298 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 296 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1154 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 671 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 717 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 56 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.342 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 75 ; 0.248 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1018 ; 1.579 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1257 ; 1.858 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 629 ; 2.554 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 531 ; 3.412 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): 35.5270 27.3830 -5.1220 REMARK 3 T TENSOR REMARK 3 T11: -0.0056 T22: 0.1187 REMARK 3 T33: 0.0484 T12: 0.0100 REMARK 3 T13: -0.0038 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.5560 L22: 10.9955 REMARK 3 L33: 4.1806 L12: 1.4965 REMARK 3 L13: 0.2024 L23: -1.3135 REMARK 3 S TENSOR REMARK 3 S11: -0.1009 S12: 0.1839 S13: 0.0640 REMARK 3 S21: 0.1673 S22: 0.2852 S23: -0.2058 REMARK 3 S31: 0.1307 S32: 0.0489 S33: -0.1843 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 37.3580 39.5800 -10.4990 REMARK 3 T TENSOR REMARK 3 T11: 0.0743 T22: 0.1497 REMARK 3 T33: 0.1440 T12: -0.1027 REMARK 3 T13: -0.0339 T23: 0.1302 REMARK 3 L TENSOR REMARK 3 L11: 7.6206 L22: 10.7749 REMARK 3 L33: 2.9892 L12: 7.1317 REMARK 3 L13: -2.7905 L23: -2.9763 REMARK 3 S TENSOR REMARK 3 S11: -0.7559 S12: 0.9991 S13: 0.7434 REMARK 3 S21: -1.1564 S22: 0.9258 S23: 0.8575 REMARK 3 S31: 0.0115 S32: -0.4129 S33: -0.1699 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7070 30.1760 -10.1100 REMARK 3 T TENSOR REMARK 3 T11: -0.0146 T22: 0.1786 REMARK 3 T33: 0.0685 T12: 0.0203 REMARK 3 T13: -0.0413 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 6.2799 L22: 21.2239 REMARK 3 L33: 8.3641 L12: -7.2561 REMARK 3 L13: -3.8236 L23: 6.0718 REMARK 3 S TENSOR REMARK 3 S11: 0.1930 S12: 0.2660 S13: 0.2127 REMARK 3 S21: -0.3532 S22: -0.3107 S23: 0.5335 REMARK 3 S31: -0.4685 S32: -0.9315 S33: 0.1177 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9570 42.5030 7.2860 REMARK 3 T TENSOR REMARK 3 T11: -0.0045 T22: 0.0284 REMARK 3 T33: 0.0949 T12: 0.0365 REMARK 3 T13: 0.1252 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 19.1112 L22: 5.1500 REMARK 3 L33: 10.2383 L12: 0.3246 REMARK 3 L13: 4.1716 L23: 2.3336 REMARK 3 S TENSOR REMARK 3 S11: 0.3894 S12: 0.0287 S13: 0.9808 REMARK 3 S21: -0.0690 S22: -0.3036 S23: 0.5214 REMARK 3 S31: -0.7939 S32: -0.9192 S33: -0.0858 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5140 33.8290 5.8260 REMARK 3 T TENSOR REMARK 3 T11: -0.0217 T22: 0.0758 REMARK 3 T33: 0.0678 T12: -0.0138 REMARK 3 T13: 0.0302 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 4.0110 L22: 1.9382 REMARK 3 L33: 3.4258 L12: 1.6568 REMARK 3 L13: -1.0928 L23: -0.7364 REMARK 3 S TENSOR REMARK 3 S11: 0.2376 S12: -0.3369 S13: 0.2432 REMARK 3 S21: 0.1065 S22: -0.0992 S23: 0.0836 REMARK 3 S31: -0.1577 S32: 0.1368 S33: -0.1383 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 162 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7800 20.7470 0.7030 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.0771 REMARK 3 T33: 0.0715 T12: -0.0439 REMARK 3 T13: -0.0033 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 3.3233 L22: 2.1752 REMARK 3 L33: 8.1485 L12: 0.0692 REMARK 3 L13: 0.6798 L23: -1.5338 REMARK 3 S TENSOR REMARK 3 S11: -0.1462 S12: 0.1692 S13: -0.0508 REMARK 3 S21: -0.0717 S22: 0.0338 S23: 0.0473 REMARK 3 S31: 0.2264 S32: -0.1826 S33: 0.1124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THERE IS A CYSTEINE S-S BRIDGE BETWEEN CYS166 AND REMARK 3 CYS166 FROM A SYMMETRY MOLECULE REMARK 4 REMARK 4 2JCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1290030940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 313450 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 20.17 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 38.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG3350, 20% GLYCEROL, 0.2M SODIUM REMARK 280 SULPHATE, 2MM TCEP, 0.3M NACL, 20 MM HEPES PH7.5, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.04667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.02333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.03500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.01167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 115.05833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.04667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 46.02333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 23.01167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.03500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 115.05833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2011 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 19 REMARK 465 MET A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 GLU A 50 REMARK 465 GLY A 51 REMARK 465 VAL A 52 REMARK 465 ALA A 53 REMARK 465 ALA A 54 REMARK 465 ASN A 185 REMARK 465 GLY A 186 REMARK 465 PRO A 187 REMARK 465 ILE A 188 REMARK 465 LEU A 189 REMARK 465 ASN A 190 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 121 O HOH A 2051 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 94.69 -160.88 REMARK 500 LEU A 65 33.98 -146.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 64 LEU A 65 -117.80 REMARK 500 GLY A 122 ILE A 123 146.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BXL RELATED DB: PDB REMARK 900 STRUCTURE OF BCL-XL/BAK PEPTIDE COMPLEX, NMR, MINIMIZED AVERAGE REMARK 900 STRUCTURE REMARK 999 REMARK 999 SEQUENCE REMARK 999 COMPARED TO OUR CLONED AND TEV CLEAVED CONSTRUCT WE MISS 4AA REMARK 999 IN THE N-TERMINUS AND 6AA IN THE C-TERMINUS. IN ADDITION REMARK 999 WE HAVE A GAP BETWEEN RESIDUE 50-54 IN THIS STRUCTURE. DBREF 2JCN A 19 20 PDB 2JCN 2JCN 19 20 DBREF 2JCN A 21 190 UNP Q16611 BAK_HUMAN 21 190 SEQRES 1 A 172 SER MET SER ALA SER GLU GLU GLN VAL ALA GLN ASP THR SEQRES 2 A 172 GLU GLU VAL PHE ARG SER TYR VAL PHE TYR ARG HIS GLN SEQRES 3 A 172 GLN GLU GLN GLU ALA GLU GLY VAL ALA ALA PRO ALA ASP SEQRES 4 A 172 PRO GLU MET VAL THR LEU PRO LEU GLN PRO SER SER THR SEQRES 5 A 172 MET GLY GLN VAL GLY ARG GLN LEU ALA ILE ILE GLY ASP SEQRES 6 A 172 ASP ILE ASN ARG ARG TYR ASP SER GLU PHE GLN THR MET SEQRES 7 A 172 LEU GLN HIS LEU GLN PRO THR ALA GLU ASN ALA TYR GLU SEQRES 8 A 172 TYR PHE THR LYS ILE ALA THR SER LEU PHE GLU SER GLY SEQRES 9 A 172 ILE ASN TRP GLY ARG VAL VAL ALA LEU LEU GLY PHE GLY SEQRES 10 A 172 TYR ARG LEU ALA LEU HIS VAL TYR GLN HIS GLY LEU THR SEQRES 11 A 172 GLY PHE LEU GLY GLN VAL THR ARG PHE VAL VAL ASP PHE SEQRES 12 A 172 MET LEU HIS HIS CYS ILE ALA ARG TRP ILE ALA GLN ARG SEQRES 13 A 172 GLY GLY TRP VAL ALA ALA LEU ASN LEU GLY ASN GLY PRO SEQRES 14 A 172 ILE LEU ASN HET SO4 A1001 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *89(H2 O) HELIX 1 1 SER A 23 GLU A 48 1 26 HELIX 2 2 ASP A 57 VAL A 61 5 5 HELIX 3 3 SER A 69 GLY A 82 1 14 HELIX 4 4 ASP A 84 GLN A 101 1 18 HELIX 5 5 ASN A 106 PHE A 119 1 14 HELIX 6 6 ASN A 124 HIS A 145 1 22 HELIX 7 7 PHE A 150 HIS A 165 1 16 HELIX 8 8 CYS A 166 ARG A 174 1 9 HELIX 9 9 GLY A 176 LEU A 183 5 8 SSBOND 1 CYS A 166 CYS A 166 1555 10665 2.22 SITE 1 AC1 9 ASN A 124 TRP A 125 GLY A 152 ARG A 156 SITE 2 AC1 9 TRP A 170 ARG A 174 HOH A2054 HOH A2067 SITE 3 AC1 9 HOH A2089 CRYST1 62.770 62.770 138.070 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015931 0.009198 0.000000 0.00000 SCALE2 0.000000 0.018396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007243 0.00000