HEADER LECTIN 10-JAN-07 2JDK TITLE LECTIN PA-IIL OF P.AERUGINOSA COMPLEXED WITH DISACCHARIDE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN PA-IIL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PA-IIL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET25PA2L KEYWDS PSEUDOMONAS AERUGINOSA, LECTIN, GLYCOMIMETIC, CYSTIC FIBROSIS EXPDTA X-RAY DIFFRACTION AUTHOR K.MAROTTE,C.SABIN,C.PREVILLE,M.PYMBOCK,I.DEGUISE,M.WIMMEROVA, AUTHOR 2 E.P.MITCHELL,A.IMBERTY,R.ROY REVDAT 4 29-JUL-20 2JDK 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 24-FEB-09 2JDK 1 VERSN REVDAT 2 11-SEP-07 2JDK 1 JRNL REVDAT 1 24-JUL-07 2JDK 0 JRNL AUTH K.MAROTTE,C.SABIN,C.PREVILLE,M.PYMBOCK,M.WIMMEROVA, JRNL AUTH 2 E.P.MITCHELL,A.IMBERTY,R.ROY JRNL TITL X-RAY STRUCTURES AND THERMODYNAMICS OF THE INTERACTION OF JRNL TITL 2 PA-IIL FROM PSEUDOMONAS AERUGINOSA WITH DISACCHARIDE JRNL TITL 3 DERIVATIVES. JRNL REF CHEMMEDCHEM V. 2 1328 2007 JRNL REFN ISSN 1860-7179 JRNL PMID 17623286 JRNL DOI 10.1002/CMDC.200700100 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.MITCHELL,C.HOULES,D.SUDAKEVITZ,M.WIMMEROVA,C.GAUTIER, REMARK 1 AUTH 2 S.PEREZ,A.WU,N.GILBOA-GARBER,A.IMBERTY REMARK 1 TITL STRUCTURAL BASIS FOR OLIGOSACCHARIDE-MEDIATED ADHESION OF REMARK 1 TITL 2 PSEUDOMONAS AERUGINOSA IN THE LUNGS OF CYSTIC FIBROSIS REMARK 1 TITL 3 PATIENTS REMARK 1 REF NAT.STRUCT.BIOL. V. 9 918 2002 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 12415289 REMARK 1 DOI 10.1038/NSB865 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 157059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.113 REMARK 3 R VALUE (WORKING SET) : 0.112 REMARK 3 FREE R VALUE : 0.134 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8319 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11449 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1450 REMARK 3 BIN FREE R VALUE SET COUNT : 620 REMARK 3 BIN FREE R VALUE : 0.1740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 623 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.023 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.623 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3596 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4957 ; 1.686 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 7.148 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;41.399 ;27.070 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 491 ;10.628 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.912 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2775 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1716 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2645 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 426 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 61 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2367 ; 1.726 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3816 ; 2.458 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1311 ; 3.163 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1141 ; 4.542 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1290031040. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL DIAMOND REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 165425 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 22.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS HCL 0.1M, PH8.5, 1.75 M AMMNONIUM REMARK 280 SULFATE(THE PA-IIL/GLYCOMIMETIC COMPLEXE WAS OBTAINED BY SOAKING REMARK 280 METHOD FROM FUCOSE-CONTAINING CRISTAL) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.53900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 465 MET C 0 REMARK 465 MET D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O5 NAG F 1 N1 T45 C 1120 2.01 REMARK 500 C2 NAG F 1 N1 T45 C 1120 2.15 REMARK 500 O5 NAG E 1 N1 T45 B 1117 2.18 REMARK 500 O5 NAG G 1 N1 T45 D 1117 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -43.75 -134.09 REMARK 500 ASN B 46 36.67 -140.86 REMARK 500 GLU B 86 -41.24 -145.12 REMARK 500 ASN C 46 35.37 -141.78 REMARK 500 GLU C 86 -31.30 -161.91 REMARK 500 GLU C 86 -49.91 -137.29 REMARK 500 ASN D 85 16.26 58.44 REMARK 500 GLU D 86 -42.54 -132.53 REMARK 500 GLU D 86 -45.75 -150.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 144.3 REMARK 620 3 ASP A 101 OD2 154.4 46.6 REMARK 620 4 ASN A 103 OD1 87.1 71.0 76.2 REMARK 620 5 ASP A 104 OD1 82.2 69.2 115.7 87.1 REMARK 620 6 FUC A1115 O3 130.8 63.3 73.5 134.3 76.3 REMARK 620 7 FUC A1115 O4 77.5 128.5 113.3 160.2 102.9 65.4 REMARK 620 8 GLY B 114 O 79.8 124.9 79.9 86.6 161.2 120.1 78.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1117 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 53.4 REMARK 620 3 ASP A 99 OD1 85.6 82.7 REMARK 620 4 ASP A 101 OD1 78.8 131.3 84.9 REMARK 620 5 ASP A 104 OD1 118.0 130.2 146.3 77.4 REMARK 620 6 ASP A 104 OD2 83.4 79.4 162.1 106.6 51.4 REMARK 620 7 FUC A1115 O2 140.3 87.5 97.2 140.9 80.0 82.6 REMARK 620 8 FUC A1115 O3 149.2 144.1 75.8 75.4 72.2 119.9 67.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1119 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN B 21 O 79.3 REMARK 620 3 ASP B 101 OD2 80.1 153.6 REMARK 620 4 ASP B 101 OD1 125.1 143.0 47.0 REMARK 620 5 ASN B 103 OD1 86.4 86.1 76.4 70.2 REMARK 620 6 ASP B 104 OD1 160.1 81.3 116.9 70.1 87.6 REMARK 620 7 FUC E 2 O3 120.6 131.7 73.5 64.0 134.2 76.4 REMARK 620 8 FUC E 2 O4 79.0 78.5 113.2 129.0 160.4 101.7 65.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1118 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE2 REMARK 620 2 GLU B 95 OE1 53.6 REMARK 620 3 ASP B 99 OD1 82.2 84.5 REMARK 620 4 ASP B 101 OD1 133.4 80.7 85.2 REMARK 620 5 ASP B 104 OD1 129.7 118.7 147.2 77.0 REMARK 620 6 ASP B 104 OD2 79.5 84.0 161.7 106.9 51.0 REMARK 620 7 FUC E 2 O2 86.2 139.2 97.9 140.1 79.6 81.7 REMARK 620 8 FUC E 2 O3 142.8 150.6 76.9 75.3 72.0 119.0 66.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1116 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 21 O REMARK 620 2 ASP C 101 OD1 143.3 REMARK 620 3 ASP C 101 OD2 152.9 46.4 REMARK 620 4 ASN C 103 OD1 85.8 70.2 75.7 REMARK 620 5 ASP C 104 OD1 82.4 69.3 115.7 87.0 REMARK 620 6 GLY D 114 O 78.9 125.1 80.3 86.7 160.7 REMARK 620 7 FUC F 2 O4 78.4 129.1 114.4 160.4 102.1 79.0 REMARK 620 8 FUC F 2 O3 132.4 63.7 73.8 134.0 76.3 120.5 65.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1117 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 95 OE1 REMARK 620 2 GLU C 95 OE2 53.7 REMARK 620 3 ASP C 99 OD1 85.5 82.5 REMARK 620 4 ASP C 101 OD1 80.0 132.7 85.1 REMARK 620 5 ASP C 104 OD2 83.1 79.5 161.9 106.5 REMARK 620 6 ASP C 104 OD1 118.1 130.2 146.5 76.9 51.4 REMARK 620 7 FUC F 2 O3 150.2 143.0 76.0 75.3 119.8 72.2 REMARK 620 8 FUC F 2 O2 139.6 86.6 97.6 140.3 82.3 79.8 67.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1118 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY C 114 O REMARK 620 2 ASN D 21 O 80.1 REMARK 620 3 ASP D 101 OD2 79.8 154.3 REMARK 620 4 ASP D 101 OD1 124.2 143.4 46.4 REMARK 620 5 ASN D 103 OD1 87.0 86.6 76.5 69.8 REMARK 620 6 ASP D 104 OD1 160.9 81.8 115.6 69.3 85.9 REMARK 620 7 FUC G 2 O3 120.2 131.1 73.5 64.2 134.0 76.8 REMARK 620 8 FUC G 2 O4 79.6 76.8 114.8 129.9 160.2 102.1 65.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1119 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 95 OE2 REMARK 620 2 GLU D 95 OE1 53.4 REMARK 620 3 ASP D 99 OD1 83.7 85.5 REMARK 620 4 ASP D 101 OD1 131.8 79.5 83.4 REMARK 620 5 ASP D 104 OD2 79.7 82.6 163.2 105.9 REMARK 620 6 ASP D 104 OD1 129.7 117.7 146.0 77.5 50.8 REMARK 620 7 FUC G 2 O3 142.9 151.5 76.3 76.7 119.1 72.1 REMARK 620 8 FUC G 2 O2 86.2 138.6 99.9 141.8 81.6 79.4 67.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GZT RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) TOGETHER WITH FUCOSE REMARK 900 RELATED ID: 1OUR RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH MANNOSE REMARK 900 RELATED ID: 1OUS RELATED DB: PDB REMARK 900 LECB (PA-LII) CALCIUM-FREE REMARK 900 RELATED ID: 1OUX RELATED DB: PDB REMARK 900 LECB (PA-LII) SUGAR-FREE REMARK 900 RELATED ID: 1OVP RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH FRUCTOSE REMARK 900 RELATED ID: 1OVS RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH CORE TRIMANNOSIDE REMARK 900 RELATED ID: 1OXC RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH FUCOSE REMARK 900 RELATED ID: 1UZV RELATED DB: PDB REMARK 900 HIGH AFFINITY FUCOSE BINDING OF PSEUDOMONAS AERUGINOSA LECTIN II: REMARK 900 1.0 E CRYSTAL STRUCTURE OF THE COMPLEX REMARK 900 RELATED ID: 1W43 RELATED DB: PDB REMARK 900 STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL)COMPLEXED REMARK 900 WITH LEWISA TRISACCHARIDE REMARK 900 RELATED ID: 1W8F RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) COMPLEXED WITH LACTO-N- REMARK 900 NEO-FUCOPENTAOSE V( LNPFV) REMARK 900 RELATED ID: 1W8H RELATED DB: PDB REMARK 900 STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL)COMPLEXED REMARK 900 WITH LEWISA TRISACCHARIDE REMARK 900 RELATED ID: 2BOJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN (PA-IIL) REMARK 900 COMPLEXED WITH METHYL-B-D -ARABINOPYRANOSIDE REMARK 900 RELATED ID: 2BP6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN (PA-IIL) REMARK 900 COMPLEXED WITH A-L- GALACTOPYRANOSIDE DBREF 2JDK A 0 114 UNP Q9HYN5 Q9HYN5_PSEAE 1 115 DBREF 2JDK B 0 114 UNP Q9HYN5 Q9HYN5_PSEAE 1 115 DBREF 2JDK C 0 114 UNP Q9HYN5 Q9HYN5_PSEAE 1 115 DBREF 2JDK D 0 114 UNP Q9HYN5 Q9HYN5_PSEAE 1 115 SEQRES 1 A 115 MET ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR SEQRES 2 A 115 ARG PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR SEQRES 3 A 115 GLN THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA SEQRES 4 A 115 THR PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY SEQRES 5 A 115 THR GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN SEQRES 6 A 115 VAL GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SEQRES 7 A 115 SER ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA SEQRES 8 A 115 LEU VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN SEQRES 9 A 115 ASP ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 115 MET ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR SEQRES 2 B 115 ARG PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR SEQRES 3 B 115 GLN THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA SEQRES 4 B 115 THR PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY SEQRES 5 B 115 THR GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN SEQRES 6 B 115 VAL GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SEQRES 7 B 115 SER ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA SEQRES 8 B 115 LEU VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN SEQRES 9 B 115 ASP ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 115 MET ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR SEQRES 2 C 115 ARG PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR SEQRES 3 C 115 GLN THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA SEQRES 4 C 115 THR PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY SEQRES 5 C 115 THR GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN SEQRES 6 C 115 VAL GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SEQRES 7 C 115 SER ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA SEQRES 8 C 115 LEU VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN SEQRES 9 C 115 ASP ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 115 MET ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR SEQRES 2 D 115 ARG PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR SEQRES 3 D 115 GLN THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA SEQRES 4 D 115 THR PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY SEQRES 5 D 115 THR GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN SEQRES 6 D 115 VAL GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SEQRES 7 D 115 SER ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA SEQRES 8 D 115 LEU VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN SEQRES 9 D 115 ASP ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY HET NAG E 1 14 HET FUC E 2 10 HET NAG F 1 14 HET FUC F 2 10 HET NAG G 1 14 HET FUC G 2 10 HET FUC A1115 11 HET CA A1116 1 HET CA A1117 1 HET T45 B1117 9 HET CA B1118 1 HET CA B1119 1 HET SO4 C1115 5 HET CA C1116 1 HET CA C1117 1 HET T45 C1120 9 HET T45 D1117 9 HET CA D1118 1 HET CA D1119 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM T45 METHYL 2H-1,2,3-TRIAZOLE-4-CARBOXYLATE HETNAM SO4 SULFATE ION FORMUL 5 NAG 3(C8 H15 N O6) FORMUL 5 FUC 4(C6 H12 O5) FORMUL 9 CA 8(CA 2+) FORMUL 11 T45 3(C4 H5 N3 O2) FORMUL 14 SO4 O4 S 2- FORMUL 21 HOH *623(H2 O) SHEET 1 AA 3 VAL A 5 THR A 7 0 SHEET 2 AA 3 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AA 3 ARG A 13 VAL A 32 -1 O THR A 27 N SER A 68 SHEET 1 AB 3 VAL A 5 THR A 7 0 SHEET 2 AB 3 LYS A 62 VAL A 69 -1 O VAL A 63 N PHE A 6 SHEET 3 AB 3 ARG A 72 PRO A 73 -1 O ARG A 72 N VAL A 69 SHEET 1 BA 3 VAL B 5 THR B 7 0 SHEET 2 BA 3 LYS B 62 VAL B 69 -1 O VAL B 63 N PHE B 6 SHEET 3 BA 3 ARG B 13 VAL B 32 -1 O THR B 27 N SER B 68 SHEET 1 BB 3 VAL B 5 THR B 7 0 SHEET 2 BB 3 LYS B 62 VAL B 69 -1 O VAL B 63 N PHE B 6 SHEET 3 BB 3 ARG B 72 PRO B 73 -1 O ARG B 72 N VAL B 69 SHEET 1 CA 4 VAL C 5 THR C 7 0 SHEET 2 CA 4 LYS C 62 VAL C 69 -1 O VAL C 63 N PHE C 6 SHEET 3 CA 4 GLN C 26 VAL C 32 -1 O THR C 27 N SER C 68 SHEET 4 CA 4 GLU C 35 GLY C 42 -1 O GLU C 35 N VAL C 32 SHEET 1 CB 3 VAL C 5 THR C 7 0 SHEET 2 CB 3 LYS C 62 VAL C 69 -1 O VAL C 63 N PHE C 6 SHEET 3 CB 3 ARG C 72 PRO C 73 -1 O ARG C 72 N VAL C 69 LINK N1 T45 B1117 C1 NAG E 1 1555 1555 1.31 LINK N1 T45 C1120 C1 NAG F 1 1555 1555 1.32 LINK N1 T45 D1117 C1 NAG G 1 1555 1555 1.31 LINK O4 NAG E 1 C1 FUC E 2 1555 1555 1.42 LINK O4 NAG F 1 C1 FUC F 2 1555 1555 1.43 LINK O4 NAG G 1 C1 FUC G 2 1555 1555 1.43 LINK O ASN A 21 CA CA A1116 1555 1555 2.36 LINK OE1 GLU A 95 CA CA A1117 1555 1555 2.47 LINK OE2 GLU A 95 CA CA A1117 1555 1555 2.41 LINK OD1 ASP A 99 CA CA A1117 1555 1555 2.38 LINK OD1 ASP A 101 CA CA A1116 1555 1555 3.05 LINK OD2 ASP A 101 CA CA A1116 1555 1555 2.43 LINK OD1 ASP A 101 CA CA A1117 1555 1555 2.36 LINK OD1 ASN A 103 CA CA A1116 1555 1555 2.34 LINK OD1 ASP A 104 CA CA A1116 1555 1555 2.36 LINK OD1 ASP A 104 CA CA A1117 1555 1555 2.63 LINK OD2 ASP A 104 CA CA A1117 1555 1555 2.41 LINK O GLY A 114 CA CA B1119 1555 1555 2.45 LINK O3 FUC A1115 CA CA A1116 1555 1555 2.49 LINK O4 FUC A1115 CA CA A1116 1555 1555 2.47 LINK O2 FUC A1115 CA CA A1117 1555 1555 2.52 LINK O3 FUC A1115 CA CA A1117 1555 1555 2.45 LINK CA CA A1116 O GLY B 114 1555 1555 2.42 LINK O ASN B 21 CA CA B1119 1555 1555 2.37 LINK OE2 GLU B 95 CA CA B1118 1555 1555 2.41 LINK OE1 GLU B 95 CA CA B1118 1555 1555 2.46 LINK OD1 ASP B 99 CA CA B1118 1555 1555 2.35 LINK OD1 ASP B 101 CA CA B1118 1555 1555 2.37 LINK OD2 ASP B 101 CA CA B1119 1555 1555 2.42 LINK OD1 ASP B 101 CA CA B1119 1555 1555 3.01 LINK OD1 ASN B 103 CA CA B1119 1555 1555 2.35 LINK OD1 ASP B 104 CA CA B1118 1555 1555 2.65 LINK OD2 ASP B 104 CA CA B1118 1555 1555 2.41 LINK OD1 ASP B 104 CA CA B1119 1555 1555 2.36 LINK CA CA B1118 O2 FUC E 2 1555 1555 2.52 LINK CA CA B1118 O3 FUC E 2 1555 1555 2.48 LINK CA CA B1119 O3 FUC E 2 1555 1555 2.51 LINK CA CA B1119 O4 FUC E 2 1555 1555 2.46 LINK O ASN C 21 CA CA C1116 1555 1555 2.37 LINK OE1 GLU C 95 CA CA C1117 1555 1555 2.46 LINK OE2 GLU C 95 CA CA C1117 1555 1555 2.42 LINK OD1 ASP C 99 CA CA C1117 1555 1555 2.35 LINK OD1 ASP C 101 CA CA C1116 1555 1555 3.02 LINK OD2 ASP C 101 CA CA C1116 1555 1555 2.41 LINK OD1 ASP C 101 CA CA C1117 1555 1555 2.36 LINK OD1 ASN C 103 CA CA C1116 1555 1555 2.34 LINK OD1 ASP C 104 CA CA C1116 1555 1555 2.37 LINK OD2 ASP C 104 CA CA C1117 1555 1555 2.41 LINK OD1 ASP C 104 CA CA C1117 1555 1555 2.63 LINK O GLY C 114 CA CA D1118 1555 1555 2.40 LINK CA CA C1116 O GLY D 114 1555 1555 2.41 LINK CA CA C1116 O4 FUC F 2 1555 1555 2.47 LINK CA CA C1116 O3 FUC F 2 1555 1555 2.50 LINK CA CA C1117 O3 FUC F 2 1555 1555 2.46 LINK CA CA C1117 O2 FUC F 2 1555 1555 2.52 LINK O ASN D 21 CA CA D1118 1555 1555 2.37 LINK OE2 GLU D 95 CA CA D1119 1555 1555 2.44 LINK OE1 GLU D 95 CA CA D1119 1555 1555 2.48 LINK OD1 ASP D 99 CA CA D1119 1555 1555 2.36 LINK OD2 ASP D 101 CA CA D1118 1555 1555 2.41 LINK OD1 ASP D 101 CA CA D1118 1555 1555 3.05 LINK OD1 ASP D 101 CA CA D1119 1555 1555 2.34 LINK OD1 ASN D 103 CA CA D1118 1555 1555 2.35 LINK OD1 ASP D 104 CA CA D1118 1555 1555 2.36 LINK OD2 ASP D 104 CA CA D1119 1555 1555 2.42 LINK OD1 ASP D 104 CA CA D1119 1555 1555 2.64 LINK CA CA D1118 O3 FUC G 2 1555 1555 2.49 LINK CA CA D1118 O4 FUC G 2 1555 1555 2.48 LINK CA CA D1119 O3 FUC G 2 1555 1555 2.47 LINK CA CA D1119 O2 FUC G 2 1555 1555 2.53 CISPEP 1 TRP A 111 PRO A 112 0 -5.78 CISPEP 2 TRP B 111 PRO B 112 0 -6.07 CISPEP 3 TRP C 111 PRO C 112 0 -9.74 CISPEP 4 TRP D 111 PRO D 112 0 -6.97 CRYST1 52.611 73.078 54.501 90.00 94.35 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019007 0.000000 0.001446 0.00000 SCALE2 0.000000 0.013684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018401 0.00000