HEADER HYDROLASE 18-JAN-07 2JEP TITLE NATIVE FAMILY 5 XYLOGLUCANASE FROM PAENIBACILLUS PABULI COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOGLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.151; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS PABULI; SOURCE 3 ORGANISM_TAXID: 1472; SOURCE 4 STRAIN: DSM13330; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1423 KEYWDS FAMILY 5, XYLOGLUCANASE, PLANT CELL WALL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.M.GLOSTER,F.M.IBATULLIN,K.MACAULEY,J.M.EKLOF,S.ROBERTS, AUTHOR 2 J.P.TURKENBURG,M.E.BJORNVAD,P.L.JORGENSEN,S.DANIELSEN,K.JOHANSEN, AUTHOR 3 T.V.BORCHERT,K.S.WILSON,H.BRUMER,G.J.DAVIES REVDAT 5 13-DEC-23 2JEP 1 LINK REVDAT 4 24-FEB-09 2JEP 1 VERSN REVDAT 3 03-JUL-07 2JEP 1 JRNL REVDAT 2 03-APR-07 2JEP 1 AUTHOR JRNL REVDAT 1 20-MAR-07 2JEP 0 JRNL AUTH T.M.GLOSTER,F.M.IBATULLIN,K.MACAULEY,J.M.EKLOF,S.ROBERTS, JRNL AUTH 2 J.P.TURKENBURG,M.E.BJORNVAD,P.L.JORGENSEN,S.DANIELSEN, JRNL AUTH 3 K.JOHANSEN,T.V.BORCHERT,K.S.WILSON,H.BRUMER,G.J.DAVIES JRNL TITL CHARACTERIZATION AND THREE-DIMENSIONAL STRUCTURES OF TWO JRNL TITL 2 DISTINCT BACTERIAL XYLOGLUCANASES FROM FAMILIES GH5 AND JRNL TITL 3 GH12. JRNL REF J.BIOL.CHEM. V. 282 19177 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17376777 JRNL DOI 10.1074/JBC.M700224200 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0011 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 128009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.116 REMARK 3 R VALUE (WORKING SET) : 0.115 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6771 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9206 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1510 REMARK 3 BIN FREE R VALUE SET COUNT : 463 REMARK 3 BIN FREE R VALUE : 0.2030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5729 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 1278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.272 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6235 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4067 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8559 ; 1.419 ; 1.911 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9991 ; 0.963 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 820 ; 5.876 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 328 ;37.346 ;25.671 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1003 ;10.485 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.080 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 896 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7248 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1277 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1338 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4598 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3180 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2928 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 778 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.218 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 109 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3873 ; 1.248 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6124 ; 1.748 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2808 ; 2.508 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2388 ; 3.276 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 34-37 IN THE B CHAIN DO NOT FIT THE DENSITY REMARK 3 WELL, BUT HAVE BEEN MODELLED AS IN THE A CHAIN STRUCTURE WHICH REMARK 3 IS MORE ORDERED. THERE IS ALSO DENSITY IN THE ACTIVE SITE (NEAR REMARK 3 TO RESIDUES 182 & 323) WHICH CANNOT BE MODELLED AS ANY SMALL REMARK 3 MOLECULE KNOWN TO BE PRESENT AND HAS INSTEAD CONTAINS WATER REMARK 3 MOLECULES. REMARK 4 REMARK 4 2JEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1290030237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 134851 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 42.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.11000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ECG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-25% PEG 8000, 0.2 M CACL2, 0.1 M REMARK 280 TRIS, PH 8.5, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.20800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.19850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.78700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.19850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.20800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.78700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 TRP A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 PHE A 8 REMARK 465 GLY A 9 REMARK 465 ILE A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 PHE A 23 REMARK 465 THR A 24 REMARK 465 GLY A 25 REMARK 465 TRP A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 LYS A 29 REMARK 465 ALA A 30 REMARK 465 SER A 31 REMARK 465 ALA A 32 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 LYS B 3 REMARK 465 LYS B 4 REMARK 465 TRP B 5 REMARK 465 LYS B 6 REMARK 465 LYS B 7 REMARK 465 PHE B 8 REMARK 465 GLY B 9 REMARK 465 ILE B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 LEU B 13 REMARK 465 ALA B 14 REMARK 465 LEU B 15 REMARK 465 VAL B 16 REMARK 465 LEU B 17 REMARK 465 VAL B 18 REMARK 465 ALA B 19 REMARK 465 ALA B 20 REMARK 465 VAL B 21 REMARK 465 ALA B 22 REMARK 465 PHE B 23 REMARK 465 THR B 24 REMARK 465 GLY B 25 REMARK 465 TRP B 26 REMARK 465 SER B 27 REMARK 465 ALA B 28 REMARK 465 LYS B 29 REMARK 465 ALA B 30 REMARK 465 SER B 31 REMARK 465 ALA B 32 REMARK 465 ALA B 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 355 CE NZ REMARK 470 LYS B 355 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 113 O HOH A 2172 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 51 -96.95 -129.00 REMARK 500 ALA A 55 -77.44 -146.56 REMARK 500 VAL A 56 115.08 91.01 REMARK 500 ASN A 61 117.98 -166.26 REMARK 500 TYR A 92 -59.12 -120.53 REMARK 500 LEU A 93 -126.08 54.10 REMARK 500 HIS A 131 -77.68 -108.94 REMARK 500 ASN A 149 71.60 -108.84 REMARK 500 ASN A 181 -103.06 -103.75 REMARK 500 THR A 229 28.96 49.77 REMARK 500 ASP A 245 53.46 -143.43 REMARK 500 GLN A 297 -157.32 -91.06 REMARK 500 ASN A 378 24.37 -141.22 REMARK 500 GLN B 51 -98.39 -128.70 REMARK 500 ASN B 61 118.43 -165.33 REMARK 500 LEU B 93 -126.55 53.45 REMARK 500 HIS B 131 -79.24 -107.65 REMARK 500 ASN B 149 71.79 -111.94 REMARK 500 ASN B 181 -103.66 -102.72 REMARK 500 THR B 229 29.68 49.85 REMARK 500 GLN B 297 -155.83 -92.31 REMARK 500 ASN B 378 11.05 -140.32 REMARK 500 ASN B 378 14.92 -142.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2059 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2096 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B2045 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B2074 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B2086 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B2087 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B2091 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B2223 DISTANCE = 6.44 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1398 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EDO A1396 O1 REMARK 620 2 EDO A1396 O2 66.1 REMARK 620 3 HOH A2245 O 138.9 154.3 REMARK 620 4 HOH A2345 O 130.5 87.4 77.7 REMARK 620 5 HOH A2541 O 74.6 100.5 94.0 70.0 REMARK 620 6 HOH A2628 O 66.9 131.5 72.1 133.7 77.9 REMARK 620 7 HOH A2630 O 82.2 87.1 91.0 140.0 149.8 75.4 REMARK 620 8 HOH A2631 O 131.9 72.5 82.5 68.5 138.1 138.0 72.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1397 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EDO B1396 O2 REMARK 620 2 EDO B1396 O1 66.4 REMARK 620 3 HOH B2235 O 154.2 138.7 REMARK 620 4 HOH B2332 O 86.7 128.5 79.4 REMARK 620 5 HOH B2541 O 101.2 73.7 94.2 69.5 REMARK 620 6 HOH B2640 O 131.6 67.2 71.7 134.1 77.7 REMARK 620 7 HOH B2641 O 72.9 133.6 81.7 67.9 137.3 138.1 REMARK 620 8 HOH B2642 O 86.4 83.6 90.4 140.0 150.3 75.9 72.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B1396 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JEP RELATED DB: PDB REMARK 900 NATIVE FAMILY 5 XYLOGLUCANASE FROM PAENIBACILLUS PABULI REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST 32 RESIDUES CANNOT BE OBSERVED, AND ARE LIKELY REMARK 999 TO CORRESPOND TO A SIGNAL PEPTIDE CLEAVED DURING REMARK 999 EXPRESSION OF THE PROTEIN. DBREF 2JEP A 1 395 PDB 2JEP 2JEP 1 395 DBREF 2JEP B 1 395 PDB 2JEP 2JEP 1 395 SEQRES 1 A 395 MET PHE LYS LYS TRP LYS LYS PHE GLY ILE SER SER LEU SEQRES 2 A 395 ALA LEU VAL LEU VAL ALA ALA VAL ALA PHE THR GLY TRP SEQRES 3 A 395 SER ALA LYS ALA SER ALA ALA ASP ALA SER GLN ILE VAL SEQRES 4 A 395 SER GLU MET GLY ALA GLY TRP ASN LEU GLY ASN GLN LEU SEQRES 5 A 395 GLU ALA ALA VAL ASN GLY THR PRO ASN GLU THR ALA TRP SEQRES 6 A 395 GLY ASN PRO THR VAL THR PRO GLU LEU ILE LYS LYS VAL SEQRES 7 A 395 LYS ALA ALA GLY PHE LYS SER ILE ARG ILE PRO VAL SER SEQRES 8 A 395 TYR LEU ASN ASN ILE GLY SER ALA PRO ASN TYR THR ILE SEQRES 9 A 395 ASN ALA ALA TRP LEU ASN ARG ILE GLN GLN VAL VAL ASP SEQRES 10 A 395 TYR ALA TYR ASN GLU GLY LEU TYR VAL ILE ILE ASN ILE SEQRES 11 A 395 HIS GLY ASP GLY TYR ASN SER VAL GLN GLY GLY TRP LEU SEQRES 12 A 395 LEU VAL ASN GLY GLY ASN GLN THR ALA ILE LYS GLU LYS SEQRES 13 A 395 TYR LYS LYS VAL TRP GLN GLN ILE ALA THR LYS PHE SER SEQRES 14 A 395 ASN TYR ASN ASP ARG LEU ILE PHE GLU SER MET ASN GLU SEQRES 15 A 395 VAL PHE ASP GLY ASN TYR GLY ASN PRO ASN SER ALA TYR SEQRES 16 A 395 TYR THR ASN LEU ASN ALA TYR ASN GLN ILE PHE VAL ASP SEQRES 17 A 395 THR VAL ARG GLN THR GLY GLY ASN ASN ASN ALA ARG TRP SEQRES 18 A 395 LEU LEU VAL PRO GLY TRP ASN THR ASN ILE ASP TYR THR SEQRES 19 A 395 VAL GLY ASN TYR GLY PHE THR LEU PRO THR ASP ASN TYR SEQRES 20 A 395 ARG SER SER ALA ILE PRO SER SER GLN LYS ARG ILE MET SEQRES 21 A 395 ILE SER ALA HIS TYR TYR SER PRO TRP ASP PHE ALA GLY SEQRES 22 A 395 GLU GLU ASN GLY ASN ILE THR GLN TRP GLY ALA THR SER SEQRES 23 A 395 THR ASN PRO ALA LYS LYS SER THR TRP GLY GLN GLU ASP SEQRES 24 A 395 TYR LEU GLU SER GLN PHE LYS SER MET TYR ASP LYS PHE SEQRES 25 A 395 VAL THR GLN GLY TYR PRO VAL VAL ILE GLY GLU PHE GLY SEQRES 26 A 395 SER ILE ASP LYS THR SER TYR ASP SER SER ASN ASN VAL SEQRES 27 A 395 TYR ARG ALA ALA TYR ALA LYS ALA VAL THR ALA LYS ALA SEQRES 28 A 395 LYS LYS TYR LYS MET VAL PRO VAL TYR TRP ASP ASN GLY SEQRES 29 A 395 HIS ASN GLY GLN HIS GLY PHE ALA LEU PHE ASN ARG SER SEQRES 30 A 395 ASN ASN THR VAL THR GLN GLN ASN ILE ILE ASN ALA ILE SEQRES 31 A 395 MET GLN GLY MET GLN SEQRES 1 B 395 MET PHE LYS LYS TRP LYS LYS PHE GLY ILE SER SER LEU SEQRES 2 B 395 ALA LEU VAL LEU VAL ALA ALA VAL ALA PHE THR GLY TRP SEQRES 3 B 395 SER ALA LYS ALA SER ALA ALA ASP ALA SER GLN ILE VAL SEQRES 4 B 395 SER GLU MET GLY ALA GLY TRP ASN LEU GLY ASN GLN LEU SEQRES 5 B 395 GLU ALA ALA VAL ASN GLY THR PRO ASN GLU THR ALA TRP SEQRES 6 B 395 GLY ASN PRO THR VAL THR PRO GLU LEU ILE LYS LYS VAL SEQRES 7 B 395 LYS ALA ALA GLY PHE LYS SER ILE ARG ILE PRO VAL SER SEQRES 8 B 395 TYR LEU ASN ASN ILE GLY SER ALA PRO ASN TYR THR ILE SEQRES 9 B 395 ASN ALA ALA TRP LEU ASN ARG ILE GLN GLN VAL VAL ASP SEQRES 10 B 395 TYR ALA TYR ASN GLU GLY LEU TYR VAL ILE ILE ASN ILE SEQRES 11 B 395 HIS GLY ASP GLY TYR ASN SER VAL GLN GLY GLY TRP LEU SEQRES 12 B 395 LEU VAL ASN GLY GLY ASN GLN THR ALA ILE LYS GLU LYS SEQRES 13 B 395 TYR LYS LYS VAL TRP GLN GLN ILE ALA THR LYS PHE SER SEQRES 14 B 395 ASN TYR ASN ASP ARG LEU ILE PHE GLU SER MET ASN GLU SEQRES 15 B 395 VAL PHE ASP GLY ASN TYR GLY ASN PRO ASN SER ALA TYR SEQRES 16 B 395 TYR THR ASN LEU ASN ALA TYR ASN GLN ILE PHE VAL ASP SEQRES 17 B 395 THR VAL ARG GLN THR GLY GLY ASN ASN ASN ALA ARG TRP SEQRES 18 B 395 LEU LEU VAL PRO GLY TRP ASN THR ASN ILE ASP TYR THR SEQRES 19 B 395 VAL GLY ASN TYR GLY PHE THR LEU PRO THR ASP ASN TYR SEQRES 20 B 395 ARG SER SER ALA ILE PRO SER SER GLN LYS ARG ILE MET SEQRES 21 B 395 ILE SER ALA HIS TYR TYR SER PRO TRP ASP PHE ALA GLY SEQRES 22 B 395 GLU GLU ASN GLY ASN ILE THR GLN TRP GLY ALA THR SER SEQRES 23 B 395 THR ASN PRO ALA LYS LYS SER THR TRP GLY GLN GLU ASP SEQRES 24 B 395 TYR LEU GLU SER GLN PHE LYS SER MET TYR ASP LYS PHE SEQRES 25 B 395 VAL THR GLN GLY TYR PRO VAL VAL ILE GLY GLU PHE GLY SEQRES 26 B 395 SER ILE ASP LYS THR SER TYR ASP SER SER ASN ASN VAL SEQRES 27 B 395 TYR ARG ALA ALA TYR ALA LYS ALA VAL THR ALA LYS ALA SEQRES 28 B 395 LYS LYS TYR LYS MET VAL PRO VAL TYR TRP ASP ASN GLY SEQRES 29 B 395 HIS ASN GLY GLN HIS GLY PHE ALA LEU PHE ASN ARG SER SEQRES 30 B 395 ASN ASN THR VAL THR GLN GLN ASN ILE ILE ASN ALA ILE SEQRES 31 B 395 MET GLN GLY MET GLN HET EDO A1396 4 HET EDO A1397 4 HET CA A1398 1 HET EDO B1396 4 HET CA B1397 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 5 CA 2(CA 2+) FORMUL 8 HOH *1278(H2 O) HELIX 1 1 ASP A 34 GLY A 43 1 10 HELIX 2 2 THR A 71 ALA A 81 1 11 HELIX 3 3 TYR A 92 ASN A 95 5 4 HELIX 4 4 ASN A 105 ASN A 121 1 17 HELIX 5 5 HIS A 131 TYR A 135 5 5 HELIX 6 6 ASN A 149 PHE A 168 1 20 HELIX 7 7 ASN A 192 GLN A 212 1 21 HELIX 8 8 GLY A 214 ALA A 219 5 6 HELIX 9 9 TRP A 227 THR A 229 5 3 HELIX 10 10 ASN A 230 GLY A 236 1 7 HELIX 11 11 PRO A 268 GLY A 273 1 6 HELIX 12 12 ASN A 288 LYS A 291 5 4 HELIX 13 13 GLN A 297 PHE A 312 1 16 HELIX 14 14 VAL A 313 GLY A 316 5 4 HELIX 15 15 SER A 335 TYR A 354 1 20 HELIX 16 16 GLN A 383 MET A 394 1 12 HELIX 17 17 ASP B 34 GLY B 43 1 10 HELIX 18 18 THR B 71 ALA B 81 1 11 HELIX 19 19 TYR B 92 ASN B 95 5 4 HELIX 20 20 ASN B 105 ASN B 121 1 17 HELIX 21 21 HIS B 131 TYR B 135 5 5 HELIX 22 22 ASN B 149 PHE B 168 1 20 HELIX 23 23 ASN B 192 THR B 213 1 22 HELIX 24 24 GLY B 214 ALA B 219 5 6 HELIX 25 25 TRP B 227 THR B 229 5 3 HELIX 26 26 ASN B 230 GLY B 236 1 7 HELIX 27 27 PRO B 268 GLY B 273 1 6 HELIX 28 28 ASN B 288 LYS B 291 5 4 HELIX 29 29 GLN B 297 PHE B 312 1 16 HELIX 30 30 VAL B 313 GLY B 316 5 4 HELIX 31 31 SER B 335 TYR B 354 1 20 HELIX 32 32 GLN B 383 MET B 394 1 12 SHEET 1 AA10 GLY A 45 LEU A 48 0 SHEET 2 AA10 SER A 85 ILE A 88 1 O SER A 85 N TRP A 46 SHEET 3 AA10 TYR A 125 ILE A 128 1 O TYR A 125 N ILE A 86 SHEET 4 AA10 LEU A 175 GLU A 178 1 O ILE A 176 N ILE A 128 SHEET 5 AA10 LEU A 222 PRO A 225 1 N LEU A 223 O PHE A 177 SHEET 6 AA10 ILE A 259 TYR A 265 1 O MET A 260 N VAL A 224 SHEET 7 AA10 VAL A 319 PHE A 324 1 O VAL A 320 N ALA A 263 SHEET 8 AA10 VAL A 357 ASP A 362 1 O VAL A 357 N ILE A 321 SHEET 9 AA10 GLY A 45 LEU A 48 1 O GLY A 45 N TYR A 360 SHEET 10 AA10 GLY A 45 LEU A 48 0 SHEET 1 AB 2 ALA A 55 VAL A 56 0 SHEET 2 AB 2 THR A 59 PRO A 60 -1 O THR A 59 N VAL A 56 SHEET 1 AC 2 PHE A 374 ASN A 375 0 SHEET 2 AC 2 THR A 380 VAL A 381 -1 O THR A 380 N ASN A 375 SHEET 1 BA 9 GLY B 45 LEU B 48 0 SHEET 2 BA 9 SER B 85 ILE B 88 1 O SER B 85 N TRP B 46 SHEET 3 BA 9 TYR B 125 ILE B 128 1 O TYR B 125 N ILE B 86 SHEET 4 BA 9 LEU B 175 GLU B 178 1 O ILE B 176 N ILE B 128 SHEET 5 BA 9 LEU B 222 PRO B 225 1 N LEU B 223 O PHE B 177 SHEET 6 BA 9 ILE B 259 TYR B 265 1 O MET B 260 N VAL B 224 SHEET 7 BA 9 VAL B 319 PHE B 324 1 O VAL B 320 N ALA B 263 SHEET 8 BA 9 VAL B 357 ASP B 362 1 O VAL B 357 N ILE B 321 SHEET 9 BA 9 GLY B 45 LEU B 48 1 O GLY B 45 N TYR B 360 SHEET 1 BB 2 ALA B 55 VAL B 56 0 SHEET 2 BB 2 THR B 59 PRO B 60 -1 O THR B 59 N VAL B 56 SHEET 1 BC 2 PHE B 374 ASN B 375 0 SHEET 2 BC 2 THR B 380 VAL B 381 -1 O THR B 380 N ASN B 375 LINK O1 EDO A1396 CA CA A1398 1555 1555 2.54 LINK O2 EDO A1396 CA CA A1398 1555 1555 2.49 LINK CA CA A1398 O HOH A2245 1555 1555 2.38 LINK CA CA A1398 O HOH A2345 1555 1555 2.44 LINK CA CA A1398 O HOH A2541 1555 1555 2.39 LINK CA CA A1398 O HOH A2628 1555 1555 2.55 LINK CA CA A1398 O HOH A2630 1555 1555 2.38 LINK CA CA A1398 O HOH A2631 1555 1555 2.48 LINK O2 EDO B1396 CA CA B1397 1555 1555 2.46 LINK O1 EDO B1396 CA CA B1397 1555 1555 2.55 LINK CA CA B1397 O HOH B2235 1555 1555 2.35 LINK CA CA B1397 O HOH B2332 1555 1555 2.48 LINK CA CA B1397 O HOH B2541 1555 1555 2.40 LINK CA CA B1397 O HOH B2640 1555 1555 2.59 LINK CA CA B1397 O HOH B2641 1555 1555 2.47 LINK CA CA B1397 O HOH B2642 1555 1555 2.38 CISPEP 1 ALA A 99 PRO A 100 0 -2.27 CISPEP 2 SER A 267 PRO A 268 0 -6.04 CISPEP 3 ALA B 99 PRO B 100 0 -0.01 CISPEP 4 SER B 267 PRO B 268 0 -5.92 SITE 1 AC1 7 EDO A1396 HOH A2245 HOH A2345 HOH A2541 SITE 2 AC1 7 HOH A2628 HOH A2630 HOH A2631 SITE 1 AC2 7 EDO B1396 HOH B2235 HOH B2332 HOH B2541 SITE 2 AC2 7 HOH B2640 HOH B2641 HOH B2642 SITE 1 AC3 9 TYR A 266 GLU A 323 TRP A 361 PHE A 371 SITE 2 AC3 9 CA A1398 HOH A2541 HOH A2628 HOH A2629 SITE 3 AC3 9 HOH A2631 SITE 1 AC4 8 ALA A 219 ARG A 258 HOH A2390 HOH A2632 SITE 2 AC4 8 HOH A2633 HOH A2634 HOH A2635 ASN B 187 SITE 1 AC5 10 TYR B 266 TRP B 269 GLU B 323 TRP B 361 SITE 2 AC5 10 PHE B 371 CA B1397 HOH B2541 HOH B2640 SITE 3 AC5 10 HOH B2641 HOH B2643 CRYST1 84.416 89.574 90.397 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011846 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011164 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011062 0.00000 MTRIX1 1 0.999900 -0.012310 0.009834 -41.97000 1 MTRIX2 1 0.012360 0.999900 -0.004817 -3.84300 1 MTRIX3 1 -0.009774 0.004938 0.999900 0.80270 1