HEADER IMMUNE RESPONSE 16-FEB-07 2JGW TITLE STRUCTURE OF CCP MODULE 7 OF COMPLEMENT FACTOR H - THE AMD AT RISK TITLE 2 VARIENT (402H) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT FACTOR H; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CCP MODULE 7, RESIDUES 386-446; COMPND 5 SYNONYM: H FACTOR 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAB KEYWDS AGE RELATED MACULAR DEGENERATION, AGE-RELATED MACULAR DEGENERATION, KEYWDS 2 DISEASE MUTATION, GLYCOSAMINOGLYCAN, ALTERNATIVE SPLICING, KEYWDS 3 COMPLEMENT ALTERNATE PATHWAY, GLYCOPROTEIN, INNATE IMMUNITY, IMMUNE KEYWDS 4 RESPONSE, SUSHI, FACTOR H, COMPLEMENT, POLYMORPHISM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.P.HERBERT,J.A.DEAKIN,C.Q.SCHMIDT,B.S.BLAUM,C.EGAN,V.P.FERREIRA, AUTHOR 2 M.K.PANGBURN,M.LYON,D.UHRIN,P.N.BARLOW REVDAT 4 02-MAY-18 2JGW 1 JRNL REMARK REVDAT 3 24-FEB-09 2JGW 1 VERSN REVDAT 2 03-JUL-07 2JGW 1 JRNL REVDAT 1 20-MAR-07 2JGW 0 JRNL AUTH A.P.HERBERT,J.A.DEAKIN,C.Q.SCHMIDT,B.S.BLAUM,C.EGAN, JRNL AUTH 2 V.P.FERREIRA,M.K.PANGBURN,M.LYON,D.UHRIN,P.N.BARLOW JRNL TITL STRUCTURE SHOWS THAT A GLYCOSAMINOGLYCAN AND PROTEIN JRNL TITL 2 RECOGNITION SITE IN FACTOR H IS PERTURBED BY AGE-RELATED JRNL TITL 3 MACULAR DEGENERATION-LINKED SINGLE NUCLEOTIDE POLYMORPHISM. JRNL REF J. BIOL. CHEM. V. 282 18960 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17360715 JRNL DOI 10.1074/JBC.M609636200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION REMARK 4 REMARK 4 2JGW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1290031484. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0 REMARK 210 PH : 5.2; 5.2 REMARK 210 IONIC STRENGTH : 20; 20 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CBCACONH; CBCANH; H_CCONH TOCSY; REMARK 210 HCCH TOCSY; HNCO; 15N EDITED REMARK 210 TOCSY HSQC; HBHACONH; HBHANH; C_ REMARK 210 CCONH TOCSY; HBCBCGCDCEHE; REMARK 210 HBCBCGCDHD REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS ANALYSIS REMARK 210 METHOD USED : ARIA 2.0 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST OVERALL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED FACTOR H CCP 7(402H) REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 401 HZ PHE A 406 1.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 392 -168.94 -75.40 REMARK 500 1 ILE A 412 135.90 -170.43 REMARK 500 1 GLU A 433 -65.31 -175.21 REMARK 500 1 THR A 439 110.03 68.87 REMARK 500 2 ASN A 396 47.03 -146.76 REMARK 500 2 GLU A 433 -67.16 -174.70 REMARK 500 2 ASN A 434 44.78 -106.53 REMARK 500 2 THR A 439 112.74 66.82 REMARK 500 2 PRO A 440 99.17 -61.10 REMARK 500 2 VAL A 445 45.16 -93.15 REMARK 500 3 GLU A 433 -59.84 -175.90 REMARK 500 3 ASN A 434 35.71 -95.28 REMARK 500 3 THR A 439 117.74 68.68 REMARK 500 3 PRO A 440 82.72 -69.62 REMARK 500 4 GLU A 395 -83.50 63.83 REMARK 500 4 ILE A 412 139.16 -170.06 REMARK 500 4 GLU A 433 -75.01 -177.01 REMARK 500 4 THR A 439 103.12 65.38 REMARK 500 4 PRO A 440 80.00 -69.69 REMARK 500 4 CYS A 442 99.26 -56.16 REMARK 500 5 ARG A 387 50.38 -68.15 REMARK 500 5 PRO A 392 -166.18 -76.97 REMARK 500 5 ILE A 412 139.06 -172.23 REMARK 500 5 MET A 432 -153.00 -85.88 REMARK 500 5 ASN A 434 62.12 -107.84 REMARK 500 5 THR A 439 111.05 68.05 REMARK 500 5 PRO A 440 83.06 -58.29 REMARK 500 6 PRO A 423 4.20 -58.41 REMARK 500 6 GLU A 433 -62.82 -178.83 REMARK 500 6 ASN A 434 40.86 -87.55 REMARK 500 6 THR A 439 112.64 71.14 REMARK 500 7 PRO A 392 -166.77 -76.20 REMARK 500 7 ASN A 399 47.87 -96.86 REMARK 500 7 GLU A 433 -77.02 -176.03 REMARK 500 7 THR A 439 103.57 70.62 REMARK 500 8 LEU A 394 55.16 -99.70 REMARK 500 8 GLU A 395 -86.53 59.57 REMARK 500 8 ASN A 399 71.38 34.41 REMARK 500 8 ILE A 412 138.52 -176.49 REMARK 500 8 GLU A 433 -70.00 -168.48 REMARK 500 8 THR A 439 96.66 62.50 REMARK 500 8 PRO A 440 86.00 -69.79 REMARK 500 8 ARG A 441 87.10 -151.05 REMARK 500 9 ASN A 399 -63.74 72.83 REMARK 500 9 GLN A 400 -41.26 56.33 REMARK 500 9 ILE A 412 135.93 -172.67 REMARK 500 9 LYS A 424 30.55 72.47 REMARK 500 9 THR A 439 97.89 65.77 REMARK 500 10 ARG A 387 80.88 -40.10 REMARK 500 10 ASN A 396 50.96 -112.56 REMARK 500 REMARK 500 THIS ENTRY HAS 108 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FHC RELATED DB: PDB REMARK 900 C3D AND HEPARIN BINDING COMPLEMENT FACTOR H DOMAINS SCR19-20 REMARK 900 RELATED ID: 1HAQ RELATED DB: PDB REMARK 900 FOUR MODELS OF HUMAN FACTOR H DETERMINED BY SOLUTION SCATTERING REMARK 900 CURVE-FITTING AND HOMOLOGY MODELLING REMARK 900 RELATED ID: 1HCC RELATED DB: PDB REMARK 900 RELATED ID: 1HFH RELATED DB: PDB REMARK 900 FACTOR H, 15TH AND 16TH C-MODULE PAIR ( NMR, MINIMIZED AVERAGED REMARK 900 STRUCTURE) REMARK 900 RELATED ID: 1HFI RELATED DB: PDB REMARK 900 FACTOR H, 15TH C-MODULE PAIR (NMR, MINIMIZED AVERAGED STRUCTURE) REMARK 900 RELATED ID: 1KOV RELATED DB: PDB REMARK 900 HOMOLOGY MODEL OF HUMAN FACTOR H SCRS 6 AND 7 REMARK 900 RELATED ID: 2BZM RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE PRIMARY HOST RECOGNITION REGION OF REMARK 900 COMPLEMENT FACTOR H REMARK 900 RELATED ID: 2G7I RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN COMPLEMENT FACTOR H CARBOXYL TERMINALDOMAINS 19- REMARK 900 20: A BASIS FOR ATYPICAL HEMOLYTIC UREMICSYNDROME REMARK 900 RELATED ID: 2JGX RELATED DB: PDB REMARK 900 STRUCTURE OF CCP MODULE 7 OF COMPLEMENT FACTOR H - THE AMD NOT AT REMARK 900 RISK VARIENT (402Y) REMARK 900 RELATED ID: 7420 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN SEGMENT CONTAINING THE COMMON HIS VARIENT AT REMARK 999 POSITION 402 DBREF 2JGW A 386 446 UNP P08603 CFAH_HUMAN 386 446 SEQRES 1 A 61 LEU ARG LYS CYS TYR PHE PRO TYR LEU GLU ASN GLY TYR SEQRES 2 A 61 ASN GLN ASN HIS GLY ARG LYS PHE VAL GLN GLY LYS SER SEQRES 3 A 61 ILE ASP VAL ALA CYS HIS PRO GLY TYR ALA LEU PRO LYS SEQRES 4 A 61 ALA GLN THR THR VAL THR CYS MET GLU ASN GLY TRP SER SEQRES 5 A 61 PRO THR PRO ARG CYS ILE ARG VAL LYS HELIX 1 1 PRO A 423 ALA A 425 5 3 SHEET 1 AA 2 CYS A 389 TYR A 390 0 SHEET 2 AA 2 LYS A 405 PHE A 406 -1 O PHE A 406 N CYS A 389 SHEET 1 AB 2 GLY A 397 TYR A 398 0 SHEET 2 AB 2 ALA A 415 CYS A 416 -1 O ALA A 415 N TYR A 398 SHEET 1 AC 2 SER A 411 ASP A 413 0 SHEET 2 AC 2 THR A 428 THR A 430 -1 O VAL A 429 N ILE A 412 SHEET 1 AD 2 TYR A 420 ALA A 421 0 SHEET 2 AD 2 ILE A 443 ARG A 444 -1 O ILE A 443 N ALA A 421 SSBOND 1 CYS A 389 CYS A 431 1555 1555 2.03 SSBOND 2 CYS A 416 CYS A 442 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1