data_2JGX # _entry.id 2JGX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JGX PDBE EBI-31494 WWPDB D_1290031494 BMRB 7421 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1FHC unspecified 'C3D AND HEPARIN BINDING COMPLEMENT FACTOR H DOMAINS SCR19-20' PDB 1HAQ unspecified 'FOUR MODELS OF HUMAN FACTOR H DETERMINED BY SOLUTION SCATTERING CURVE-FITTING AND HOMOLOGY MODELLING' PDB 1HCC unspecified . PDB 1HFH unspecified 'FACTOR H, 15TH AND 16TH C-MODULE PAIR ( NMR, MINIMIZED AVERAGED STRUCTURE)' PDB 1HFI unspecified 'FACTOR H, 15TH C-MODULE PAIR (NMR, MINIMIZED AVERAGED STRUCTURE)' PDB 1KOV unspecified 'HOMOLOGY MODEL OF HUMAN FACTOR H SCRS 6 AND 7' PDB 2BZM unspecified 'SOLUTION STRUCTURE OF THE PRIMARY HOST RECOGNITION REGION OF COMPLEMENT FACTOR H' PDB 2G7I unspecified 'STRUCTURE OF HUMAN COMPLEMENT FACTOR H CARBOXYL TERMINALDOMAINS 19-20: A BASIS FOR ATYPICAL HEMOLYTIC UREMICSYNDROME' PDB 2JGW unspecified 'STRUCTURE OF CCP MODULE 7 OF COMPLEMENT FACTOR H - THE AMD AT RISK VARIENT (402H)' BMRB 7421 unspecified . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2JGX _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-02-16 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Herbert, A.P.' 1 ? 'Deakin, J.A.' 2 ? 'Schmidt, C.Q.' 3 ? 'Blaum, B.S.' 4 ? 'Egan, C.' 5 ? 'Ferreira, V.P.' 6 ? 'Pangburn, M.K.' 7 ? 'Lyon, M.' 8 ? 'Uhrin, D.' 9 ? 'Barlow, P.N.' 10 ? # _citation.id primary _citation.title ;Structure shows that a glycosaminoglycan and protein recognition site in factor H is perturbed by age-related macular degeneration-linked single nucleotide polymorphism. ; _citation.journal_abbrev 'J. Biol. Chem.' _citation.journal_volume 282 _citation.page_first 18960 _citation.page_last 18968 _citation.year 2007 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17360715 _citation.pdbx_database_id_DOI 10.1074/jbc.M609636200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Herbert, A.P.' 1 primary 'Deakin, J.A.' 2 primary 'Schmidt, C.Q.' 3 primary 'Blaum, B.S.' 4 primary 'Egan, C.' 5 primary 'Ferreira, V.P.' 6 primary 'Pangburn, M.K.' 7 primary 'Lyon, M.' 8 primary 'Uhrin, D.' 9 primary 'Barlow, P.N.' 10 # _cell.entry_id 2JGX _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JGX _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'COMPLEMENT FACTOR H' _entity.formula_weight 7010.091 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation YES _entity.pdbx_fragment 'CCP MODULE 7, RESIDUES 386-446' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'H FACTOR 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code LRKCYFPYLENGYNQNYGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVK _entity_poly.pdbx_seq_one_letter_code_can LRKCYFPYLENGYNQNYGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 ARG n 1 3 LYS n 1 4 CYS n 1 5 TYR n 1 6 PHE n 1 7 PRO n 1 8 TYR n 1 9 LEU n 1 10 GLU n 1 11 ASN n 1 12 GLY n 1 13 TYR n 1 14 ASN n 1 15 GLN n 1 16 ASN n 1 17 TYR n 1 18 GLY n 1 19 ARG n 1 20 LYS n 1 21 PHE n 1 22 VAL n 1 23 GLN n 1 24 GLY n 1 25 LYS n 1 26 SER n 1 27 ILE n 1 28 ASP n 1 29 VAL n 1 30 ALA n 1 31 CYS n 1 32 HIS n 1 33 PRO n 1 34 GLY n 1 35 TYR n 1 36 ALA n 1 37 LEU n 1 38 PRO n 1 39 LYS n 1 40 ALA n 1 41 GLN n 1 42 THR n 1 43 THR n 1 44 VAL n 1 45 THR n 1 46 CYS n 1 47 MET n 1 48 GLU n 1 49 ASN n 1 50 GLY n 1 51 TRP n 1 52 SER n 1 53 PRO n 1 54 THR n 1 55 PRO n 1 56 ARG n 1 57 CYS n 1 58 ILE n 1 59 ARG n 1 60 VAL n 1 61 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'PICHIA PASTORIS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain KM71H _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PPICZALPHAB _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CFAH_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P08603 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JGX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 61 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P08603 _struct_ref_seq.db_align_beg 386 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 446 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 386 _struct_ref_seq.pdbx_auth_seq_align_end 446 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2JGX _struct_ref_seq_dif.mon_id TYR _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 17 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P08603 _struct_ref_seq_dif.db_mon_id HIS _struct_ref_seq_dif.pdbx_seq_db_seq_num 402 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 402 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 CBCANH 1 2 1 'H_CCONH TOCSY' 1 3 1 HNCO 1 4 2 '15N EDITED TOCSY HSQC' 1 5 3 '13C EDITED NOESY HSQC' 1 6 4 '15N EDITED NOESY HSQC' 1 7 5 'HCCH TOCSY' 1 8 6 HBCBCGCDCEHE 1 9 7 HBCBCGCDHD 1 10 8 'C_CCONH TOCSY' 1 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.temperature_units _pdbx_nmr_exptl_sample_conditions.label 1 298.0 atm 1.0 5.2 20 mM pH K ? 2 298.0 atm 1.0 5.2 20 mM pH K ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '10% WATER/90% D2O' _pdbx_nmr_sample_details.solvent_system ? _pdbx_nmr_sample_details.label ? _pdbx_nmr_sample_details.type ? _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 Avance Bruker 600 ? 2 Avance Bruker 800 ? # _pdbx_nmr_refine.entry_id 2JGX _pdbx_nmr_refine.method 'ARIA 2.0' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2JGX _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED FACTOR H CCP MODULE 7 (402Y)' # _pdbx_nmr_ensemble.entry_id 2JGX _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'LOWEST OVERALL ENERGY' # _pdbx_nmr_representative.entry_id 2JGX _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS 1.1 'BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,SIMONSON,WARREN' 1 'structure solution' 'CCPNMR ANALYSIS' ANALYSIS ? 2 # _exptl.entry_id 2JGX _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2JGX _struct.title 'Structure of CCP module 7 of complement factor H - The AMD Not at risk varient (402Y)' _struct.pdbx_descriptor 'COMPLEMENT FACTOR H' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JGX _struct_keywords.pdbx_keywords 'IMMUNE RESPONSE' _struct_keywords.text ;AGE RELATED MACULAR DEGENERATION, AGE-RELATED MACULAR DEGENERATION, DISEASE MUTATION, GLYCOSAMINOGLYCAN, ALTERNATIVE SPLICING, COMPLEMENT ALTERNATE PATHWAY, GLYCOPROTEIN, INNATE IMMUNITY, IMMUNE RESPONSE, SUSHI, FACTOR H, COMPLEMENT, POLYMORPHISM ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id LEU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 37 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 41 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LEU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 422 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 426 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 46 SG ? ? A CYS 389 A CYS 431 1_555 ? ? ? ? ? ? ? 2.032 ? disulf2 disulf ? ? A CYS 31 SG ? ? ? 1_555 A CYS 57 SG ? ? A CYS 416 A CYS 442 1_555 ? ? ? ? ? ? ? 2.030 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 3 ? TYR A 5 ? LYS A 388 TYR A 390 AA 2 LYS A 20 ? VAL A 22 ? LYS A 405 VAL A 407 AB 1 LYS A 25 ? ASP A 28 ? LYS A 410 ASP A 413 AB 2 THR A 43 ? CYS A 46 ? THR A 428 CYS A 431 AC 1 TYR A 35 ? ALA A 36 ? TYR A 420 ALA A 421 AC 2 ILE A 58 ? ARG A 59 ? ILE A 443 ARG A 444 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N CYS A 4 ? N CYS A 389 O PHE A 21 ? O PHE A 406 AB 1 2 N ILE A 27 ? N ILE A 412 O VAL A 44 ? O VAL A 429 AC 1 2 N ALA A 36 ? N ALA A 421 O ILE A 58 ? O ILE A 443 # _database_PDB_matrix.entry_id 2JGX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2JGX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 386 386 LEU LEU A . n A 1 2 ARG 2 387 387 ARG ARG A . n A 1 3 LYS 3 388 388 LYS LYS A . n A 1 4 CYS 4 389 389 CYS CYS A . n A 1 5 TYR 5 390 390 TYR TYR A . n A 1 6 PHE 6 391 391 PHE PHE A . n A 1 7 PRO 7 392 392 PRO PRO A . n A 1 8 TYR 8 393 393 TYR TYR A . n A 1 9 LEU 9 394 394 LEU LEU A . n A 1 10 GLU 10 395 395 GLU GLU A . n A 1 11 ASN 11 396 396 ASN ASN A . n A 1 12 GLY 12 397 397 GLY GLY A . n A 1 13 TYR 13 398 398 TYR TYR A . n A 1 14 ASN 14 399 399 ASN ASN A . n A 1 15 GLN 15 400 400 GLN GLN A . n A 1 16 ASN 16 401 401 ASN ASN A . n A 1 17 TYR 17 402 402 TYR TYR A . n A 1 18 GLY 18 403 403 GLY GLY A . n A 1 19 ARG 19 404 404 ARG ARG A . n A 1 20 LYS 20 405 405 LYS LYS A . n A 1 21 PHE 21 406 406 PHE PHE A . n A 1 22 VAL 22 407 407 VAL VAL A . n A 1 23 GLN 23 408 408 GLN GLN A . n A 1 24 GLY 24 409 409 GLY GLY A . n A 1 25 LYS 25 410 410 LYS LYS A . n A 1 26 SER 26 411 411 SER SER A . n A 1 27 ILE 27 412 412 ILE ILE A . n A 1 28 ASP 28 413 413 ASP ASP A . n A 1 29 VAL 29 414 414 VAL VAL A . n A 1 30 ALA 30 415 415 ALA ALA A . n A 1 31 CYS 31 416 416 CYS CYS A . n A 1 32 HIS 32 417 417 HIS HIS A . n A 1 33 PRO 33 418 418 PRO PRO A . n A 1 34 GLY 34 419 419 GLY GLY A . n A 1 35 TYR 35 420 420 TYR TYR A . n A 1 36 ALA 36 421 421 ALA ALA A . n A 1 37 LEU 37 422 422 LEU LEU A . n A 1 38 PRO 38 423 423 PRO PRO A . n A 1 39 LYS 39 424 424 LYS LYS A . n A 1 40 ALA 40 425 425 ALA ALA A . n A 1 41 GLN 41 426 426 GLN GLN A . n A 1 42 THR 42 427 427 THR THR A . n A 1 43 THR 43 428 428 THR THR A . n A 1 44 VAL 44 429 429 VAL VAL A . n A 1 45 THR 45 430 430 THR THR A . n A 1 46 CYS 46 431 431 CYS CYS A . n A 1 47 MET 47 432 432 MET MET A . n A 1 48 GLU 48 433 433 GLU GLU A . n A 1 49 ASN 49 434 434 ASN ASN A . n A 1 50 GLY 50 435 435 GLY GLY A . n A 1 51 TRP 51 436 436 TRP TRP A . n A 1 52 SER 52 437 437 SER SER A . n A 1 53 PRO 53 438 438 PRO PRO A . n A 1 54 THR 54 439 439 THR THR A . n A 1 55 PRO 55 440 440 PRO PRO A . n A 1 56 ARG 56 441 441 ARG ARG A . n A 1 57 CYS 57 442 442 CYS CYS A . n A 1 58 ILE 58 443 443 ILE ILE A . n A 1 59 ARG 59 444 444 ARG ARG A . n A 1 60 VAL 60 445 445 VAL VAL A . n A 1 61 LYS 61 446 446 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-03-20 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-05-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_abbrev' 2 4 'Structure model' '_citation.page_last' 3 4 'Structure model' '_citation.pdbx_database_id_DOI' 4 4 'Structure model' '_citation.title' 5 4 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_entry_details.entry_id 2JGX _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, HIS 402 TO TYR' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;PROTEIN SEGMENT CONTAINING THE COMMON TYR VARIENT AT POSITION 402 ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HG3 A GLN 408 ? ? HA A MET 432 ? ? 1.16 2 2 HB2 A MET 432 ? ? HG A SER 437 ? ? 1.34 3 5 H A ASP 413 ? ? HG21 A THR 428 ? ? 1.05 4 6 HG3 A ARG 387 ? ? HB3 A GLN 408 ? ? 1.12 5 6 HG3 A GLN 408 ? ? HA A MET 432 ? ? 1.34 6 7 O A LYS 410 ? ? H A CYS 431 ? ? 1.58 7 9 HG3 A GLN 408 ? ? HA A MET 432 ? ? 1.29 8 11 HG3 A GLN 408 ? ? HA A MET 432 ? ? 1.10 9 11 HD3 A ARG 387 ? ? HA A ASN 434 ? ? 1.31 10 14 HG2 A ARG 387 ? ? HB3 A GLN 408 ? ? 1.29 11 15 HG3 A GLN 408 ? ? HA A MET 432 ? ? 1.31 12 16 HG3 A ARG 387 ? ? HB3 A GLN 408 ? ? 0.96 13 17 HG3 A GLN 408 ? ? HA A MET 432 ? ? 1.16 14 19 HG3 A GLN 408 ? ? HA A MET 432 ? ? 1.25 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 433 ? ? 34.46 46.03 2 1 ASN A 434 ? ? 71.97 -24.14 3 1 TRP A 436 ? ? 40.56 111.34 4 1 THR A 439 ? ? 71.88 116.05 5 1 ARG A 441 ? ? -147.65 -14.78 6 1 CYS A 442 ? ? 56.63 83.34 7 2 LEU A 394 ? ? -81.96 -96.16 8 2 GLU A 395 ? ? 173.79 -33.36 9 2 ASN A 396 ? ? -145.07 38.75 10 2 ASN A 434 ? ? 69.18 -20.94 11 2 TRP A 436 ? ? 35.69 106.81 12 2 THR A 439 ? ? 72.60 113.45 13 2 PRO A 440 ? ? -68.62 94.12 14 3 GLU A 395 ? ? 59.97 -84.13 15 3 ILE A 412 ? ? 177.72 132.71 16 3 ASP A 413 ? ? -125.71 -89.46 17 3 VAL A 414 ? ? 34.74 75.32 18 3 ALA A 415 ? ? -176.06 52.06 19 3 THR A 427 ? ? -140.93 20.30 20 3 MET A 432 ? ? -107.39 -140.13 21 3 ASN A 434 ? ? 78.43 -11.43 22 3 THR A 439 ? ? 72.66 117.65 23 3 PRO A 440 ? ? -64.44 93.81 24 3 CYS A 442 ? ? -63.07 98.89 25 4 ASN A 399 ? ? -77.77 44.49 26 4 ASN A 434 ? ? 67.90 -16.51 27 4 TRP A 436 ? ? 58.31 148.15 28 4 THR A 439 ? ? 71.71 111.08 29 5 ARG A 387 ? ? -66.73 -170.89 30 5 ILE A 412 ? ? 173.44 134.04 31 5 ASP A 413 ? ? -130.97 -140.79 32 5 THR A 427 ? ? -141.62 12.86 33 5 GLU A 433 ? ? 28.54 43.09 34 5 ASN A 434 ? ? 65.13 -17.76 35 5 TRP A 436 ? ? 42.55 111.22 36 5 THR A 439 ? ? 76.01 131.16 37 6 ARG A 387 ? ? 48.52 -172.15 38 6 LYS A 388 ? ? 73.39 37.55 39 6 ASN A 399 ? ? -80.58 49.30 40 6 PRO A 418 ? ? -34.40 120.71 41 6 ALA A 421 ? ? -175.75 -170.57 42 6 GLU A 433 ? ? -37.49 76.97 43 6 TRP A 436 ? ? -37.87 113.56 44 6 THR A 439 ? ? 70.99 112.81 45 6 PRO A 440 ? ? -66.46 86.08 46 7 GLU A 395 ? ? 66.49 -71.67 47 7 ASN A 399 ? ? -105.68 59.26 48 7 PRO A 418 ? ? -54.90 105.92 49 7 GLU A 433 ? ? 39.09 40.32 50 7 ASN A 434 ? ? 70.33 -24.05 51 7 TRP A 436 ? ? 56.35 128.78 52 7 THR A 439 ? ? 73.74 121.61 53 7 PRO A 440 ? ? -66.60 94.64 54 8 ILE A 412 ? ? -170.02 130.39 55 8 ASN A 434 ? ? 72.66 -24.95 56 8 TRP A 436 ? ? 36.25 105.41 57 8 THR A 439 ? ? 71.95 121.90 58 8 ARG A 441 ? ? -131.38 -45.77 59 8 CYS A 442 ? ? 64.78 91.97 60 9 PRO A 418 ? ? -58.05 103.07 61 9 ASN A 434 ? ? 73.02 -16.33 62 9 TRP A 436 ? ? 35.21 106.20 63 9 THR A 439 ? ? 72.94 119.37 64 9 ARG A 444 ? ? -175.35 -154.64 65 10 ARG A 387 ? ? -59.42 174.98 66 10 LYS A 388 ? ? -166.97 65.32 67 10 CYS A 389 ? ? -50.84 108.80 68 10 PRO A 418 ? ? -53.77 108.71 69 10 TRP A 436 ? ? 36.42 101.42 70 10 THR A 439 ? ? 74.35 114.19 71 10 PRO A 440 ? ? -68.78 95.95 72 11 PRO A 418 ? ? -45.21 106.98 73 11 GLU A 433 ? ? -32.98 88.55 74 11 TRP A 436 ? ? -38.93 117.89 75 11 THR A 439 ? ? 71.61 109.53 76 11 PRO A 440 ? ? -69.42 98.31 77 12 ARG A 387 ? ? -109.45 -156.41 78 12 LYS A 388 ? ? -164.61 88.63 79 12 ASN A 434 ? ? 76.03 -27.71 80 12 TRP A 436 ? ? 35.99 106.44 81 12 THR A 439 ? ? 72.80 116.33 82 12 ARG A 441 ? ? -147.20 -17.65 83 12 CYS A 442 ? ? 58.10 87.07 84 13 ILE A 412 ? ? -170.80 127.51 85 13 PRO A 418 ? ? -32.32 112.44 86 13 ASN A 434 ? ? 68.89 -24.57 87 13 TRP A 436 ? ? 59.45 128.87 88 13 THR A 439 ? ? 74.39 123.30 89 13 PRO A 440 ? ? -62.99 93.35 90 13 VAL A 445 ? ? -106.35 45.82 91 14 ARG A 387 ? ? 55.53 -169.11 92 14 GLU A 395 ? ? 67.59 -69.54 93 14 CYS A 416 ? ? -100.77 -169.25 94 14 ASN A 434 ? ? 78.77 -9.49 95 14 TRP A 436 ? ? -12.55 114.00 96 14 THR A 439 ? ? 71.17 121.27 97 15 GLU A 395 ? ? 57.14 -89.93 98 15 ASN A 399 ? ? 39.54 54.62 99 15 PRO A 418 ? ? -59.83 108.53 100 15 ASN A 434 ? ? 70.22 -23.60 101 15 TRP A 436 ? ? 56.04 125.72 102 15 THR A 439 ? ? 68.98 109.30 103 15 PRO A 440 ? ? -55.14 102.41 104 16 ARG A 387 ? ? -44.70 -174.29 105 16 LYS A 388 ? ? 73.98 79.17 106 16 ASN A 399 ? ? -81.12 48.04 107 16 GLU A 433 ? ? 28.47 68.09 108 16 THR A 439 ? ? 73.71 112.00 109 17 GLU A 433 ? ? 28.78 52.74 110 17 ASN A 434 ? ? 76.29 -25.18 111 17 TRP A 436 ? ? 20.39 106.33 112 17 THR A 439 ? ? 73.42 116.64 113 18 PRO A 392 ? ? -68.89 -90.45 114 18 TYR A 393 ? ? 167.52 128.76 115 18 LEU A 394 ? ? -73.40 -131.97 116 18 GLU A 395 ? ? -155.63 -40.99 117 18 GLU A 433 ? ? 37.91 42.84 118 18 ASN A 434 ? ? 71.24 -20.62 119 18 TRP A 436 ? ? 24.72 107.43 120 18 THR A 439 ? ? 73.61 118.46 121 19 PRO A 418 ? ? -53.83 107.60 122 19 ASN A 434 ? ? 69.56 -19.80 123 19 TRP A 436 ? ? 52.73 124.49 124 19 THR A 439 ? ? 74.15 113.41 125 19 ARG A 441 ? ? -154.13 -39.28 126 19 CYS A 442 ? ? 60.47 89.90 127 20 GLU A 433 ? ? 34.65 40.68 128 20 ASN A 434 ? ? 76.67 -23.85 129 20 TRP A 436 ? ? -39.64 125.09 130 20 THR A 439 ? ? 72.76 116.49 131 20 PRO A 440 ? ? -64.32 92.15 132 20 CYS A 442 ? ? 60.00 81.39 #