data_2JHI # _entry.id 2JHI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JHI PDBE EBI-31576 WWPDB D_1290031576 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2JHH unspecified 'STRUCTURE OF GLOBULAR HEADS OF M-FICOLIN AT ACIDIC PH' PDB 2JHK unspecified 'STRUCTURE OF GLOBULAR HEADS OF M-FICOLIN COMPLEXED WITH N-ACETYL-D-GLUCOSAMINE' PDB 2JHL unspecified 'STRUCTURE OF GLOBULAR HEADS OF M-FICOLIN COMPLEXED WITH SIALIC ACID' PDB 2JHM unspecified 'STRUCTURE OF GLOBULAR HEADS OF M-FICOLIN AT NEUTRAL PH' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2JHI _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-02-22 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Garlatti, V.' 1 'Martin, L.' 2 'Gout, E.' 3 'Reiser, J.B.' 4 'Arlaud, G.J.' 5 'Thielens, N.M.' 6 'Gaboriaud, C.' 7 # _citation.id primary _citation.title 'Structural Basis for Innate Immune Sensing by M-Ficolin and its Control by a Ph-Dependent Conformational Switch.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 282 _citation.page_first 35814 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17897951 _citation.pdbx_database_id_DOI 10.1074/JBC.M705741200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Garlatti, V.' 1 ? primary 'Martin, L.' 2 ? primary 'Gout, E.' 3 ? primary 'Reiser, J.B.' 4 ? primary 'Fujita, T.' 5 ? primary 'Arlaud, G.J.' 6 ? primary 'Thielens, N.M.' 7 ? primary 'Gaboriaud, C.' 8 ? # _cell.entry_id 2JHI _cell.length_a 73.970 _cell.length_b 73.970 _cell.length_c 126.470 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JHI _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man FICOLIN-1 24350.895 1 ? ? 'C-TERMINAL DOMAIN, RESIDUES 109-326' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-alpha-D-galactopyranose 221.208 1 ? ? ? ? 4 water nat water 18.015 80 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'FICOLIN-A, FICOLIN-ALPHA, M-FICOLIN, COLLAGEN/ FIBRINOGEN DOMAIN-CONTAINING PROTEIN 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QSCATGPRNCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWL GNDNIHALTAQGSSELRTDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSS NCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMKVRPA ; _entity_poly.pdbx_seq_one_letter_code_can ;QSCATGPRNCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWL GNDNIHALTAQGSSELRTDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSS NCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMKVRPA ; _entity_poly.pdbx_strand_id F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 SER n 1 3 CYS n 1 4 ALA n 1 5 THR n 1 6 GLY n 1 7 PRO n 1 8 ARG n 1 9 ASN n 1 10 CYS n 1 11 LYS n 1 12 ASP n 1 13 LEU n 1 14 LEU n 1 15 ASP n 1 16 ARG n 1 17 GLY n 1 18 HIS n 1 19 PHE n 1 20 LEU n 1 21 SER n 1 22 GLY n 1 23 TRP n 1 24 HIS n 1 25 THR n 1 26 ILE n 1 27 TYR n 1 28 LEU n 1 29 PRO n 1 30 ASP n 1 31 CYS n 1 32 ARG n 1 33 PRO n 1 34 LEU n 1 35 THR n 1 36 VAL n 1 37 LEU n 1 38 CYS n 1 39 ASP n 1 40 MET n 1 41 ASP n 1 42 THR n 1 43 ASP n 1 44 GLY n 1 45 GLY n 1 46 GLY n 1 47 TRP n 1 48 THR n 1 49 VAL n 1 50 PHE n 1 51 GLN n 1 52 ARG n 1 53 ARG n 1 54 MET n 1 55 ASP n 1 56 GLY n 1 57 SER n 1 58 VAL n 1 59 ASP n 1 60 PHE n 1 61 TYR n 1 62 ARG n 1 63 ASP n 1 64 TRP n 1 65 ALA n 1 66 ALA n 1 67 TYR n 1 68 LYS n 1 69 GLN n 1 70 GLY n 1 71 PHE n 1 72 GLY n 1 73 SER n 1 74 GLN n 1 75 LEU n 1 76 GLY n 1 77 GLU n 1 78 PHE n 1 79 TRP n 1 80 LEU n 1 81 GLY n 1 82 ASN n 1 83 ASP n 1 84 ASN n 1 85 ILE n 1 86 HIS n 1 87 ALA n 1 88 LEU n 1 89 THR n 1 90 ALA n 1 91 GLN n 1 92 GLY n 1 93 SER n 1 94 SER n 1 95 GLU n 1 96 LEU n 1 97 ARG n 1 98 THR n 1 99 ASP n 1 100 LEU n 1 101 VAL n 1 102 ASP n 1 103 PHE n 1 104 GLU n 1 105 GLY n 1 106 ASN n 1 107 HIS n 1 108 GLN n 1 109 PHE n 1 110 ALA n 1 111 LYS n 1 112 TYR n 1 113 LYS n 1 114 SER n 1 115 PHE n 1 116 LYS n 1 117 VAL n 1 118 ALA n 1 119 ASP n 1 120 GLU n 1 121 ALA n 1 122 GLU n 1 123 LYS n 1 124 TYR n 1 125 LYS n 1 126 LEU n 1 127 VAL n 1 128 LEU n 1 129 GLY n 1 130 ALA n 1 131 PHE n 1 132 VAL n 1 133 GLY n 1 134 GLY n 1 135 SER n 1 136 ALA n 1 137 GLY n 1 138 ASN n 1 139 SER n 1 140 LEU n 1 141 THR n 1 142 GLY n 1 143 HIS n 1 144 ASN n 1 145 ASN n 1 146 ASN n 1 147 PHE n 1 148 PHE n 1 149 SER n 1 150 THR n 1 151 LYS n 1 152 ASP n 1 153 GLN n 1 154 ASP n 1 155 ASN n 1 156 ASP n 1 157 VAL n 1 158 SER n 1 159 SER n 1 160 SER n 1 161 ASN n 1 162 CYS n 1 163 ALA n 1 164 GLU n 1 165 LYS n 1 166 PHE n 1 167 GLN n 1 168 GLY n 1 169 ALA n 1 170 TRP n 1 171 TRP n 1 172 TYR n 1 173 ALA n 1 174 ASP n 1 175 CYS n 1 176 HIS n 1 177 ALA n 1 178 SER n 1 179 ASN n 1 180 LEU n 1 181 ASN n 1 182 GLY n 1 183 LEU n 1 184 TYR n 1 185 LEU n 1 186 MET n 1 187 GLY n 1 188 PRO n 1 189 HIS n 1 190 GLU n 1 191 SER n 1 192 TYR n 1 193 ALA n 1 194 ASN n 1 195 GLY n 1 196 ILE n 1 197 ASN n 1 198 TRP n 1 199 SER n 1 200 ALA n 1 201 ALA n 1 202 LYS n 1 203 GLY n 1 204 TYR n 1 205 LYS n 1 206 TYR n 1 207 SER n 1 208 TYR n 1 209 LYS n 1 210 VAL n 1 211 SER n 1 212 GLU n 1 213 MET n 1 214 LYS n 1 215 VAL n 1 216 ARG n 1 217 PRO n 1 218 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'TRICHOPLUSIA NI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'High Five' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BACULOVIRUS _entity_src_gen.pdbx_host_org_vector 'BAC-TO-BAC SYTEM' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FCN1_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O00602 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JHI _struct_ref_seq.pdbx_strand_id F _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 218 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O00602 _struct_ref_seq.db_align_beg 109 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 326 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 80 _struct_ref_seq.pdbx_auth_seq_align_end 297 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2JHI HIS F 18 ? UNP O00602 TYR 126 conflict 97 1 1 2JHI THR F 98 ? UNP O00602 VAL 206 conflict 177 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose ? 'C8 H15 N O6' 221.208 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2JHI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_percent_sol 49.88 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-12-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength 0.872 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2JHI _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.00 _reflns.d_resolution_high 1.80 _reflns.number_obs 23757 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.36 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2JHI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 22717 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.00 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.215 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1195 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.B_iso_mean 25.68 _refine.aniso_B[1][1] 0.72000 _refine.aniso_B[2][2] 0.72000 _refine.aniso_B[3][3] -1.08000 _refine.aniso_B[1][2] 0.36000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.129 _refine.pdbx_overall_ESU_R_Free 0.114 _refine.overall_SU_ML 0.078 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.413 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1707 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 80 _refine_hist.number_atoms_total 1803 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 25.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 1902 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.235 1.925 ? 2591 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 9.300 5.000 ? 243 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.185 24.271 ? 96 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.036 15.000 ? 302 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.857 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.097 0.200 ? 254 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1529 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.194 0.300 ? 684 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.299 0.500 ? 1238 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.140 0.500 ? 160 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.151 0.300 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.158 0.500 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.610 2.000 ? 1150 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.100 3.000 ? 1837 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.338 3.000 ? 752 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.945 4.000 ? 754 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 15 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.86 _refine_ls_shell.number_reflns_R_work 2212 _refine_ls_shell.R_factor_R_work 0.2380 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3170 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 116 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2JHI _struct.title 'Structure of globular heads of M-ficolin complexed with N-acetyl-D- galactosamine' _struct.pdbx_descriptor FICOLIN-1 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JHI _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'LECTIN, COLLAGEN, ACIDIC PH, COMPLEMENT, SUGAR-BINDING PROTEIN, GLYCOPROTEIN, POLYMORPHISM, INNATE IMMUNITY, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 9 ? ARG A 16 ? ASN F 88 ARG F 95 1 ? 8 HELX_P HELX_P2 2 ASP A 63 ? GLY A 70 ? ASP F 142 GLY F 149 1 ? 8 HELX_P HELX_P3 3 GLY A 81 ? ALA A 90 ? GLY F 160 ALA F 169 1 ? 10 HELX_P HELX_P4 4 ASP A 119 ? LYS A 123 ? ASP F 198 LYS F 202 5 ? 5 HELX_P HELX_P5 5 LEU A 140 ? ASN A 144 ? LEU F 219 ASN F 223 5 ? 5 HELX_P HELX_P6 6 ASN A 161 ? PHE A 166 ? ASN F 240 PHE F 245 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 31 SG ? ? F CYS 82 F CYS 110 1_555 ? ? ? ? ? ? ? 2.047 ? ? disulf2 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 38 SG ? ? F CYS 89 F CYS 117 1_555 ? ? ? ? ? ? ? 2.057 ? ? disulf3 disulf ? ? A CYS 162 SG ? ? ? 1_555 A CYS 175 SG ? ? F CYS 241 F CYS 254 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc1 metalc ? ? A ASP 154 OD1 ? ? ? 1_555 B CA . CA ? ? F ASP 233 F CA 1298 1_555 ? ? ? ? ? ? ? 2.627 ? ? metalc2 metalc ? ? A ASP 154 OD2 ? ? ? 1_555 B CA . CA ? ? F ASP 233 F CA 1298 1_555 ? ? ? ? ? ? ? 2.616 ? ? metalc3 metalc ? ? A ASP 156 OD1 ? ? ? 1_555 B CA . CA ? ? F ASP 235 F CA 1298 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc4 metalc ? ? A SER 158 O ? ? ? 1_555 B CA . CA ? ? F SER 237 F CA 1298 1_555 ? ? ? ? ? ? ? 2.350 ? ? metalc5 metalc ? ? A SER 160 O ? ? ? 1_555 B CA . CA ? ? F SER 239 F CA 1298 1_555 ? ? ? ? ? ? ? 2.393 ? ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? F CA 1298 F HOH 2050 3_655 ? ? ? ? ? ? ? 2.390 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASP _struct_mon_prot_cis.label_seq_id 174 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASP _struct_mon_prot_cis.auth_seq_id 253 _struct_mon_prot_cis.auth_asym_id F _struct_mon_prot_cis.pdbx_label_comp_id_2 CYS _struct_mon_prot_cis.pdbx_label_seq_id_2 175 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 CYS _struct_mon_prot_cis.pdbx_auth_seq_id_2 254 _struct_mon_prot_cis.pdbx_auth_asym_id_2 F _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.83 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details FA ? 7 ? FB ? 5 ? FC ? 2 ? FD ? 2 ? FE ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense FA 1 2 ? anti-parallel FA 2 3 ? anti-parallel FA 3 4 ? anti-parallel FA 4 5 ? anti-parallel FA 5 6 ? anti-parallel FA 6 7 ? anti-parallel FB 1 2 ? anti-parallel FB 2 3 ? anti-parallel FB 3 4 ? anti-parallel FB 4 5 ? anti-parallel FC 1 2 ? anti-parallel FD 1 2 ? anti-parallel FE 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id FA 1 GLY A 22 ? TYR A 27 ? GLY F 101 TYR F 106 FA 2 PRO A 33 ? ASP A 39 ? PRO F 112 ASP F 118 FA 3 TRP A 47 ? ARG A 53 ? TRP F 126 ARG F 132 FA 4 VAL A 210 ? PRO A 217 ? VAL F 289 PRO F 296 FA 5 SER A 94 ? VAL A 101 ? SER F 173 VAL F 180 FA 6 HIS A 107 ? TYR A 112 ? HIS F 186 TYR F 191 FA 7 PHE A 131 ? GLY A 133 ? PHE F 210 GLY F 212 FB 1 GLY A 22 ? TYR A 27 ? GLY F 101 TYR F 106 FB 2 PRO A 33 ? ASP A 39 ? PRO F 112 ASP F 118 FB 3 TRP A 47 ? ARG A 53 ? TRP F 126 ARG F 132 FB 4 PHE A 78 ? TRP A 79 ? PHE F 157 TRP F 158 FB 5 PHE A 71 ? GLY A 72 ? PHE F 150 GLY F 151 FC 1 PHE A 115 ? VAL A 117 ? PHE F 194 VAL F 196 FC 2 LEU A 126 ? LEU A 128 ? LEU F 205 LEU F 207 FD 1 SER A 178 ? ASN A 179 ? SER F 257 ASN F 258 FD 2 ASN A 197 ? TRP A 198 ? ASN F 276 TRP F 277 FE 1 GLY A 187 ? PRO A 188 ? GLY F 266 PRO F 267 FE 2 TYR A 206 ? SER A 207 ? TYR F 285 SER F 286 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id FA 1 2 N ILE A 26 ? N ILE F 105 O LEU A 34 ? O LEU F 113 FA 2 3 N ASP A 39 ? N ASP F 118 O TRP A 47 ? O TRP F 126 FA 3 4 N ARG A 53 ? N ARG F 132 O SER A 211 ? O SER F 290 FA 4 5 N ARG A 216 ? N ARG F 295 O GLU A 95 ? O GLU F 174 FA 5 6 N LEU A 100 ? N LEU F 179 O GLN A 108 ? O GLN F 187 FA 6 7 O LYS A 111 ? O LYS F 190 N VAL A 132 ? N VAL F 211 FB 1 2 N ILE A 26 ? N ILE F 105 O LEU A 34 ? O LEU F 113 FB 2 3 N ASP A 39 ? N ASP F 118 O TRP A 47 ? O TRP F 126 FB 3 4 N ARG A 52 ? N ARG F 131 O PHE A 78 ? O PHE F 157 FB 4 5 N TRP A 79 ? N TRP F 158 O PHE A 71 ? O PHE F 150 FC 1 2 N LYS A 116 ? N LYS F 195 O VAL A 127 ? O VAL F 206 FD 1 2 N ASN A 179 ? N ASN F 258 O ASN A 197 ? O ASN F 276 FE 1 2 N GLY A 187 ? N GLY F 266 O SER A 207 ? O SER F 286 # _database_PDB_matrix.entry_id 2JHI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2JHI _atom_sites.fract_transf_matrix[1][1] 0.013519 _atom_sites.fract_transf_matrix[1][2] 0.007805 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015610 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007907 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 80 ? ? ? F . n A 1 2 SER 2 81 81 SER SER F . n A 1 3 CYS 3 82 82 CYS CYS F . n A 1 4 ALA 4 83 83 ALA ALA F . n A 1 5 THR 5 84 84 THR THR F . n A 1 6 GLY 6 85 85 GLY GLY F . n A 1 7 PRO 7 86 86 PRO PRO F . n A 1 8 ARG 8 87 87 ARG ARG F . n A 1 9 ASN 9 88 88 ASN ASN F . n A 1 10 CYS 10 89 89 CYS CYS F . n A 1 11 LYS 11 90 90 LYS LYS F . n A 1 12 ASP 12 91 91 ASP ASP F . n A 1 13 LEU 13 92 92 LEU LEU F . n A 1 14 LEU 14 93 93 LEU LEU F . n A 1 15 ASP 15 94 94 ASP ASP F . n A 1 16 ARG 16 95 95 ARG ARG F . n A 1 17 GLY 17 96 96 GLY GLY F . n A 1 18 HIS 18 97 97 HIS HIS F . n A 1 19 PHE 19 98 98 PHE PHE F . n A 1 20 LEU 20 99 99 LEU LEU F . n A 1 21 SER 21 100 100 SER SER F . n A 1 22 GLY 22 101 101 GLY GLY F . n A 1 23 TRP 23 102 102 TRP TRP F . n A 1 24 HIS 24 103 103 HIS HIS F . n A 1 25 THR 25 104 104 THR THR F . n A 1 26 ILE 26 105 105 ILE ILE F . n A 1 27 TYR 27 106 106 TYR TYR F . n A 1 28 LEU 28 107 107 LEU LEU F . n A 1 29 PRO 29 108 108 PRO PRO F . n A 1 30 ASP 30 109 109 ASP ASP F . n A 1 31 CYS 31 110 110 CYS CYS F . n A 1 32 ARG 32 111 111 ARG ARG F . n A 1 33 PRO 33 112 112 PRO PRO F . n A 1 34 LEU 34 113 113 LEU LEU F . n A 1 35 THR 35 114 114 THR THR F . n A 1 36 VAL 36 115 115 VAL VAL F . n A 1 37 LEU 37 116 116 LEU LEU F . n A 1 38 CYS 38 117 117 CYS CYS F . n A 1 39 ASP 39 118 118 ASP ASP F . n A 1 40 MET 40 119 119 MET MET F . n A 1 41 ASP 41 120 120 ASP ASP F . n A 1 42 THR 42 121 121 THR THR F . n A 1 43 ASP 43 122 122 ASP ASP F . n A 1 44 GLY 44 123 123 GLY GLY F . n A 1 45 GLY 45 124 124 GLY GLY F . n A 1 46 GLY 46 125 125 GLY GLY F . n A 1 47 TRP 47 126 126 TRP TRP F . n A 1 48 THR 48 127 127 THR THR F . n A 1 49 VAL 49 128 128 VAL VAL F . n A 1 50 PHE 50 129 129 PHE PHE F . n A 1 51 GLN 51 130 130 GLN GLN F . n A 1 52 ARG 52 131 131 ARG ARG F . n A 1 53 ARG 53 132 132 ARG ARG F . n A 1 54 MET 54 133 133 MET MET F . n A 1 55 ASP 55 134 134 ASP ASP F . n A 1 56 GLY 56 135 135 GLY GLY F . n A 1 57 SER 57 136 136 SER SER F . n A 1 58 VAL 58 137 137 VAL VAL F . n A 1 59 ASP 59 138 138 ASP ASP F . n A 1 60 PHE 60 139 139 PHE PHE F . n A 1 61 TYR 61 140 140 TYR TYR F . n A 1 62 ARG 62 141 141 ARG ARG F . n A 1 63 ASP 63 142 142 ASP ASP F . n A 1 64 TRP 64 143 143 TRP TRP F . n A 1 65 ALA 65 144 144 ALA ALA F . n A 1 66 ALA 66 145 145 ALA ALA F . n A 1 67 TYR 67 146 146 TYR TYR F . n A 1 68 LYS 68 147 147 LYS LYS F . n A 1 69 GLN 69 148 148 GLN GLN F . n A 1 70 GLY 70 149 149 GLY GLY F . n A 1 71 PHE 71 150 150 PHE PHE F . n A 1 72 GLY 72 151 151 GLY GLY F . n A 1 73 SER 73 152 152 SER SER F . n A 1 74 GLN 74 153 153 GLN GLN F . n A 1 75 LEU 75 154 154 LEU LEU F . n A 1 76 GLY 76 155 155 GLY GLY F . n A 1 77 GLU 77 156 156 GLU GLU F . n A 1 78 PHE 78 157 157 PHE PHE F . n A 1 79 TRP 79 158 158 TRP TRP F . n A 1 80 LEU 80 159 159 LEU LEU F . n A 1 81 GLY 81 160 160 GLY GLY F . n A 1 82 ASN 82 161 161 ASN ASN F . n A 1 83 ASP 83 162 162 ASP ASP F . n A 1 84 ASN 84 163 163 ASN ASN F . n A 1 85 ILE 85 164 164 ILE ILE F . n A 1 86 HIS 86 165 165 HIS HIS F . n A 1 87 ALA 87 166 166 ALA ALA F . n A 1 88 LEU 88 167 167 LEU LEU F . n A 1 89 THR 89 168 168 THR THR F . n A 1 90 ALA 90 169 169 ALA ALA F . n A 1 91 GLN 91 170 170 GLN GLN F . n A 1 92 GLY 92 171 171 GLY GLY F . n A 1 93 SER 93 172 172 SER SER F . n A 1 94 SER 94 173 173 SER SER F . n A 1 95 GLU 95 174 174 GLU GLU F . n A 1 96 LEU 96 175 175 LEU LEU F . n A 1 97 ARG 97 176 176 ARG ARG F . n A 1 98 THR 98 177 177 THR THR F . n A 1 99 ASP 99 178 178 ASP ASP F . n A 1 100 LEU 100 179 179 LEU LEU F . n A 1 101 VAL 101 180 180 VAL VAL F . n A 1 102 ASP 102 181 181 ASP ASP F . n A 1 103 PHE 103 182 182 PHE PHE F . n A 1 104 GLU 104 183 183 GLU GLU F . n A 1 105 GLY 105 184 184 GLY GLY F . n A 1 106 ASN 106 185 185 ASN ASN F . n A 1 107 HIS 107 186 186 HIS HIS F . n A 1 108 GLN 108 187 187 GLN GLN F . n A 1 109 PHE 109 188 188 PHE PHE F . n A 1 110 ALA 110 189 189 ALA ALA F . n A 1 111 LYS 111 190 190 LYS LYS F . n A 1 112 TYR 112 191 191 TYR TYR F . n A 1 113 LYS 113 192 192 LYS LYS F . n A 1 114 SER 114 193 193 SER SER F . n A 1 115 PHE 115 194 194 PHE PHE F . n A 1 116 LYS 116 195 195 LYS LYS F . n A 1 117 VAL 117 196 196 VAL VAL F . n A 1 118 ALA 118 197 197 ALA ALA F . n A 1 119 ASP 119 198 198 ASP ASP F . n A 1 120 GLU 120 199 199 GLU GLU F . n A 1 121 ALA 121 200 200 ALA ALA F . n A 1 122 GLU 122 201 201 GLU GLU F . n A 1 123 LYS 123 202 202 LYS LYS F . n A 1 124 TYR 124 203 203 TYR TYR F . n A 1 125 LYS 125 204 204 LYS LYS F . n A 1 126 LEU 126 205 205 LEU LEU F . n A 1 127 VAL 127 206 206 VAL VAL F . n A 1 128 LEU 128 207 207 LEU LEU F . n A 1 129 GLY 129 208 208 GLY GLY F . n A 1 130 ALA 130 209 209 ALA ALA F . n A 1 131 PHE 131 210 210 PHE PHE F . n A 1 132 VAL 132 211 211 VAL VAL F . n A 1 133 GLY 133 212 212 GLY GLY F . n A 1 134 GLY 134 213 213 GLY GLY F . n A 1 135 SER 135 214 214 SER SER F . n A 1 136 ALA 136 215 215 ALA ALA F . n A 1 137 GLY 137 216 216 GLY GLY F . n A 1 138 ASN 138 217 217 ASN ASN F . n A 1 139 SER 139 218 218 SER SER F . n A 1 140 LEU 140 219 219 LEU LEU F . n A 1 141 THR 141 220 220 THR THR F . n A 1 142 GLY 142 221 221 GLY GLY F . n A 1 143 HIS 143 222 222 HIS HIS F . n A 1 144 ASN 144 223 223 ASN ASN F . n A 1 145 ASN 145 224 224 ASN ASN F . n A 1 146 ASN 146 225 225 ASN ASN F . n A 1 147 PHE 147 226 226 PHE PHE F . n A 1 148 PHE 148 227 227 PHE PHE F . n A 1 149 SER 149 228 228 SER SER F . n A 1 150 THR 150 229 229 THR THR F . n A 1 151 LYS 151 230 230 LYS LYS F . n A 1 152 ASP 152 231 231 ASP ASP F . n A 1 153 GLN 153 232 232 GLN GLN F . n A 1 154 ASP 154 233 233 ASP ASP F . n A 1 155 ASN 155 234 234 ASN ASN F . n A 1 156 ASP 156 235 235 ASP ASP F . n A 1 157 VAL 157 236 236 VAL VAL F . n A 1 158 SER 158 237 237 SER SER F . n A 1 159 SER 159 238 238 SER SER F . n A 1 160 SER 160 239 239 SER SER F . n A 1 161 ASN 161 240 240 ASN ASN F . n A 1 162 CYS 162 241 241 CYS CYS F . n A 1 163 ALA 163 242 242 ALA ALA F . n A 1 164 GLU 164 243 243 GLU GLU F . n A 1 165 LYS 165 244 244 LYS LYS F . n A 1 166 PHE 166 245 245 PHE PHE F . n A 1 167 GLN 167 246 246 GLN GLN F . n A 1 168 GLY 168 247 247 GLY GLY F . n A 1 169 ALA 169 248 248 ALA ALA F . n A 1 170 TRP 170 249 249 TRP TRP F . n A 1 171 TRP 171 250 250 TRP TRP F . n A 1 172 TYR 172 251 251 TYR TYR F . n A 1 173 ALA 173 252 252 ALA ALA F . n A 1 174 ASP 174 253 253 ASP ASP F . n A 1 175 CYS 175 254 254 CYS CYS F . n A 1 176 HIS 176 255 255 HIS HIS F . n A 1 177 ALA 177 256 256 ALA ALA F . n A 1 178 SER 178 257 257 SER SER F . n A 1 179 ASN 179 258 258 ASN ASN F . n A 1 180 LEU 180 259 259 LEU LEU F . n A 1 181 ASN 181 260 260 ASN ASN F . n A 1 182 GLY 182 261 261 GLY GLY F . n A 1 183 LEU 183 262 262 LEU LEU F . n A 1 184 TYR 184 263 263 TYR TYR F . n A 1 185 LEU 185 264 264 LEU LEU F . n A 1 186 MET 186 265 265 MET MET F . n A 1 187 GLY 187 266 266 GLY GLY F . n A 1 188 PRO 188 267 267 PRO PRO F . n A 1 189 HIS 189 268 268 HIS HIS F . n A 1 190 GLU 190 269 269 GLU GLU F . n A 1 191 SER 191 270 270 SER SER F . n A 1 192 TYR 192 271 271 TYR TYR F . n A 1 193 ALA 193 272 272 ALA ALA F . n A 1 194 ASN 194 273 273 ASN ASN F . n A 1 195 GLY 195 274 274 GLY GLY F . n A 1 196 ILE 196 275 275 ILE ILE F . n A 1 197 ASN 197 276 276 ASN ASN F . n A 1 198 TRP 198 277 277 TRP TRP F . n A 1 199 SER 199 278 278 SER SER F . n A 1 200 ALA 200 279 279 ALA ALA F . n A 1 201 ALA 201 280 280 ALA ALA F . n A 1 202 LYS 202 281 281 LYS LYS F . n A 1 203 GLY 203 282 282 GLY GLY F . n A 1 204 TYR 204 283 283 TYR TYR F . n A 1 205 LYS 205 284 284 LYS LYS F . n A 1 206 TYR 206 285 285 TYR TYR F . n A 1 207 SER 207 286 286 SER SER F . n A 1 208 TYR 208 287 287 TYR TYR F . n A 1 209 LYS 209 288 288 LYS LYS F . n A 1 210 VAL 210 289 289 VAL VAL F . n A 1 211 SER 211 290 290 SER SER F . n A 1 212 GLU 212 291 291 GLU GLU F . n A 1 213 MET 213 292 292 MET MET F . n A 1 214 LYS 214 293 293 LYS LYS F . n A 1 215 VAL 215 294 294 VAL VAL F . n A 1 216 ARG 216 295 295 ARG ARG F . n A 1 217 PRO 217 296 296 PRO PRO F . n A 1 218 ALA 218 297 297 ALA ALA F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1298 1298 CA CA F . C 3 A2G 1 1299 1299 A2G A2G F . D 4 HOH 1 2001 2001 HOH HOH F . D 4 HOH 2 2002 2002 HOH HOH F . D 4 HOH 3 2003 2003 HOH HOH F . D 4 HOH 4 2004 2004 HOH HOH F . D 4 HOH 5 2005 2005 HOH HOH F . D 4 HOH 6 2006 2006 HOH HOH F . D 4 HOH 7 2007 2007 HOH HOH F . D 4 HOH 8 2008 2008 HOH HOH F . D 4 HOH 9 2009 2009 HOH HOH F . D 4 HOH 10 2010 2010 HOH HOH F . D 4 HOH 11 2011 2011 HOH HOH F . D 4 HOH 12 2012 2012 HOH HOH F . D 4 HOH 13 2013 2013 HOH HOH F . D 4 HOH 14 2014 2014 HOH HOH F . D 4 HOH 15 2015 2015 HOH HOH F . D 4 HOH 16 2016 2016 HOH HOH F . D 4 HOH 17 2017 2017 HOH HOH F . D 4 HOH 18 2018 2018 HOH HOH F . D 4 HOH 19 2019 2019 HOH HOH F . D 4 HOH 20 2020 2020 HOH HOH F . D 4 HOH 21 2021 2021 HOH HOH F . D 4 HOH 22 2022 2022 HOH HOH F . D 4 HOH 23 2023 2023 HOH HOH F . D 4 HOH 24 2024 2024 HOH HOH F . D 4 HOH 25 2025 2025 HOH HOH F . D 4 HOH 26 2026 2026 HOH HOH F . D 4 HOH 27 2027 2027 HOH HOH F . D 4 HOH 28 2028 2028 HOH HOH F . D 4 HOH 29 2029 2029 HOH HOH F . D 4 HOH 30 2030 2030 HOH HOH F . D 4 HOH 31 2031 2031 HOH HOH F . D 4 HOH 32 2032 2032 HOH HOH F . D 4 HOH 33 2033 2033 HOH HOH F . D 4 HOH 34 2034 2034 HOH HOH F . D 4 HOH 35 2035 2035 HOH HOH F . D 4 HOH 36 2036 2036 HOH HOH F . D 4 HOH 37 2037 2037 HOH HOH F . D 4 HOH 38 2038 2038 HOH HOH F . D 4 HOH 39 2039 2039 HOH HOH F . D 4 HOH 40 2040 2040 HOH HOH F . D 4 HOH 41 2041 2041 HOH HOH F . D 4 HOH 42 2042 2042 HOH HOH F . D 4 HOH 43 2043 2043 HOH HOH F . D 4 HOH 44 2044 2044 HOH HOH F . D 4 HOH 45 2045 2045 HOH HOH F . D 4 HOH 46 2046 2046 HOH HOH F . D 4 HOH 47 2047 2047 HOH HOH F . D 4 HOH 48 2048 2048 HOH HOH F . D 4 HOH 49 2049 2049 HOH HOH F . D 4 HOH 50 2050 2050 HOH HOH F . D 4 HOH 51 2051 2051 HOH HOH F . D 4 HOH 52 2052 2052 HOH HOH F . D 4 HOH 53 2053 2053 HOH HOH F . D 4 HOH 54 2054 2054 HOH HOH F . D 4 HOH 55 2055 2055 HOH HOH F . D 4 HOH 56 2056 2056 HOH HOH F . D 4 HOH 57 2057 2057 HOH HOH F . D 4 HOH 58 2058 2058 HOH HOH F . D 4 HOH 59 2059 2059 HOH HOH F . D 4 HOH 60 2060 2060 HOH HOH F . D 4 HOH 61 2061 2061 HOH HOH F . D 4 HOH 62 2062 2062 HOH HOH F . D 4 HOH 63 2063 2063 HOH HOH F . D 4 HOH 64 2064 2064 HOH HOH F . D 4 HOH 65 2065 2065 HOH HOH F . D 4 HOH 66 2066 2066 HOH HOH F . D 4 HOH 67 2067 2067 HOH HOH F . D 4 HOH 68 2068 2068 HOH HOH F . D 4 HOH 69 2069 2069 HOH HOH F . D 4 HOH 70 2070 2070 HOH HOH F . D 4 HOH 71 2071 2071 HOH HOH F . D 4 HOH 72 2072 2072 HOH HOH F . D 4 HOH 73 2073 2073 HOH HOH F . D 4 HOH 74 2074 2074 HOH HOH F . D 4 HOH 75 2075 2075 HOH HOH F . D 4 HOH 76 2076 2076 HOH HOH F . D 4 HOH 77 2077 2077 HOH HOH F . D 4 HOH 78 2078 2078 HOH HOH F . D 4 HOH 79 2079 2079 HOH HOH F . D 4 HOH 80 2080 2080 HOH HOH F . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 154 ? F ASP 233 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 OD2 ? A ASP 154 ? F ASP 233 ? 1_555 49.2 ? 2 OD1 ? A ASP 154 ? F ASP 233 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 OD1 ? A ASP 156 ? F ASP 235 ? 1_555 79.2 ? 3 OD2 ? A ASP 154 ? F ASP 233 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 OD1 ? A ASP 156 ? F ASP 235 ? 1_555 117.0 ? 4 OD1 ? A ASP 154 ? F ASP 233 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 O ? A SER 158 ? F SER 237 ? 1_555 155.2 ? 5 OD2 ? A ASP 154 ? F ASP 233 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 O ? A SER 158 ? F SER 237 ? 1_555 155.6 ? 6 OD1 ? A ASP 156 ? F ASP 235 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 O ? A SER 158 ? F SER 237 ? 1_555 81.8 ? 7 OD1 ? A ASP 154 ? F ASP 233 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 O ? A SER 160 ? F SER 239 ? 1_555 113.8 ? 8 OD2 ? A ASP 154 ? F ASP 233 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 O ? A SER 160 ? F SER 239 ? 1_555 80.9 ? 9 OD1 ? A ASP 156 ? F ASP 235 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 O ? A SER 160 ? F SER 239 ? 1_555 92.9 ? 10 O ? A SER 158 ? F SER 237 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 O ? A SER 160 ? F SER 239 ? 1_555 82.8 ? 11 OD1 ? A ASP 154 ? F ASP 233 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 O ? D HOH . ? F HOH 2050 ? 3_655 79.0 ? 12 OD2 ? A ASP 154 ? F ASP 233 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 O ? D HOH . ? F HOH 2050 ? 3_655 113.4 ? 13 OD1 ? A ASP 156 ? F ASP 235 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 O ? D HOH . ? F HOH 2050 ? 3_655 82.7 ? 14 O ? A SER 158 ? F SER 237 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 O ? D HOH . ? F HOH 2050 ? 3_655 83.0 ? 15 O ? A SER 160 ? F SER 239 ? 1_555 CA ? B CA . ? F CA 1298 ? 1_555 O ? D HOH . ? F HOH 2050 ? 3_655 165.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-09 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-04-03 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' Other 6 4 'Structure model' 'Source and taxonomy' 7 5 'Structure model' 'Atomic model' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' Other 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' pdbx_database_proc 3 4 'Structure model' pdbx_database_status 4 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 5 'Structure model' atom_site 6 5 'Structure model' atom_site_anisotrop 7 5 'Structure model' chem_comp 8 5 'Structure model' entity 9 5 'Structure model' pdbx_chem_comp_identifier 10 5 'Structure model' pdbx_database_status 11 5 'Structure model' pdbx_entity_nonpoly 12 5 'Structure model' pdbx_struct_conn_angle 13 5 'Structure model' struct_conn 14 5 'Structure model' struct_site 15 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity_src_gen.pdbx_host_org_cell_line' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 5 'Structure model' '_atom_site.auth_atom_id' 4 5 'Structure model' '_atom_site.label_atom_id' 5 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 6 5 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 7 5 'Structure model' '_chem_comp.name' 8 5 'Structure model' '_chem_comp.type' 9 5 'Structure model' '_entity.pdbx_description' 10 5 'Structure model' '_pdbx_database_status.status_code_sf' 11 5 'Structure model' '_pdbx_entity_nonpoly.name' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 26 5 'Structure model' '_pdbx_struct_conn_angle.value' 27 5 'Structure model' '_struct_conn.pdbx_dist_value' 28 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 40 5 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 18.3817 _pdbx_refine_tls.origin_y -7.9100 _pdbx_refine_tls.origin_z 24.4068 _pdbx_refine_tls.T[1][1] -.0474 _pdbx_refine_tls.T[2][2] -.0253 _pdbx_refine_tls.T[3][3] -.0184 _pdbx_refine_tls.T[1][2] .0178 _pdbx_refine_tls.T[1][3] -.0095 _pdbx_refine_tls.T[2][3] -.0060 _pdbx_refine_tls.L[1][1] 1.3008 _pdbx_refine_tls.L[2][2] .4816 _pdbx_refine_tls.L[3][3] .7851 _pdbx_refine_tls.L[1][2] -.0773 _pdbx_refine_tls.L[1][3] -.6956 _pdbx_refine_tls.L[2][3] .2191 _pdbx_refine_tls.S[1][1] .0107 _pdbx_refine_tls.S[1][2] -.0618 _pdbx_refine_tls.S[1][3] -.0662 _pdbx_refine_tls.S[2][1] -.0132 _pdbx_refine_tls.S[2][2] .0066 _pdbx_refine_tls.S[2][3] -.0115 _pdbx_refine_tls.S[3][1] .0115 _pdbx_refine_tls.S[3][2] .0660 _pdbx_refine_tls.S[3][3] -.0173 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id -1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id -1 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. ; # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 F _pdbx_validate_rmsd_angle.auth_comp_id_1 GLN _pdbx_validate_rmsd_angle.auth_seq_id_1 170 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 F _pdbx_validate_rmsd_angle.auth_comp_id_2 GLN _pdbx_validate_rmsd_angle.auth_seq_id_2 170 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD _pdbx_validate_rmsd_angle.auth_asym_id_3 F _pdbx_validate_rmsd_angle.auth_comp_id_3 GLN _pdbx_validate_rmsd_angle.auth_seq_id_3 170 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 128.88 _pdbx_validate_rmsd_angle.angle_target_value 111.60 _pdbx_validate_rmsd_angle.angle_deviation 17.28 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.60 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET F 133 ? A -149.98 -31.05 2 1 MET F 133 ? B -159.07 -2.64 3 1 ASP F 134 ? ? -146.36 -2.44 4 1 ASP F 134 ? ? -160.17 -2.44 5 1 PHE F 245 ? ? -154.47 -12.45 6 1 PHE F 245 ? ? -154.47 -12.38 7 1 ALA F 252 ? ? -106.82 -98.80 8 1 ASN F 258 ? ? -153.82 56.33 9 1 MET F 265 ? A 75.06 45.42 10 1 MET F 265 ? B 55.80 77.57 11 1 ALA F 280 ? ? -110.41 -77.45 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LYS _pdbx_validate_peptide_omega.auth_asym_id_1 F _pdbx_validate_peptide_omega.auth_seq_id_1 244 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PHE _pdbx_validate_peptide_omega.auth_asym_id_2 F _pdbx_validate_peptide_omega.auth_seq_id_2 245 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -113.03 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id F _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLN _pdbx_unobs_or_zero_occ_residues.auth_seq_id 80 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLN _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 2-acetamido-2-deoxy-alpha-D-galactopyranose A2G 4 water HOH #