HEADER TRANSFERASE 26-FEB-07 2JI4 TITLE HUMAN PHOSPHORIBOSYLPYROPHOSPHATE SYNTHETASE - ASSOCIATED PROTEIN 41 TITLE 2 (PAP41) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE-ASSOCIATED PROTEIN COMPND 3 2; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PHOSPHORIBOSYLPYROPHOSPHATE SYNTHETASE-ASSOCIATED PROTEIN 41 COMPND 6 - PAP41,PRPP SYNTHETASE-ASSOCIATED PROTEIN 2,41 KDA COMPND 7 PHOSPHORIBOSYPYROPHOSPHATE SYNTHETASE-ASSOCIATED PROTEIN, PAP41; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS PHOSPHORYLATION, NUCLEOTIDE BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MOCHE,L.LEHTIO,C.ARROWSMITH,H.BERGLUND,R.BUSAM,R.COLLINS, AUTHOR 2 L.G.DAHLGREN,A.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 B.M.HALLBERG,L.HOLMBERG-SCHIAVONE,I.JOHANSSON,T.KARLBERG, AUTHOR 4 T.KOTENYOVA,T.NYMAN,D.OGG,C.PERSSON,J.SAGEMARK,P.STENMARK, AUTHOR 5 M.SUNDSTROM,A.G.THORSELL,S.VAN DEN BERG,J.WEIGELT,P.NORDLUND REVDAT 3 13-DEC-23 2JI4 1 REMARK REVDAT 2 24-FEB-09 2JI4 1 VERSN REVDAT 1 06-MAR-07 2JI4 0 JRNL AUTH M.MOCHE,L.LEHTIO,C.ARROWSMITH,H.BERGLUND,R.BUSAM,R.COLLINS, JRNL AUTH 2 L.G.DAHLGREN,A.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND, JRNL AUTH 3 M.HAMMARSTROM,B.M.HALLBERG,L.HOLMBERG-SCHIAVONE,I.JOHANSSON, JRNL AUTH 4 T.KARLBERG,T.KOTENYOVA,T.NYMAN,D.OGG,C.PERSSON,J.SAGEMARK, JRNL AUTH 5 P.STENMARK,M.SUNDSTROM,A.G.THORSELL,S.VAN DEN BERG, JRNL AUTH 6 J.WEIGELT,P.NORDLUND JRNL TITL HUMAN PHOSPHORIBOSYLPYROPHOSPHATE SYNTHETASE -ASSOCIATED JRNL TITL 2 PROTEIN 41 (PAP41) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0021 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 659 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 901 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.4140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.465 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.308 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.257 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.206 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2368 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3197 ; 1.609 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 7.029 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;36.562 ;24.316 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;19.237 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.758 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1705 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1100 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1651 ; 0.333 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.195 ; 0.300 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.048 ; 0.300 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1527 ; 2.365 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2441 ; 3.662 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 902 ; 2.453 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 756 ; 3.510 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1290031620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14119 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2C4K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 52.20000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.13768 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.00000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 52.20000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.13768 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 64.00000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 52.20000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.13768 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.00000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 52.20000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.13768 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.00000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 52.20000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.13768 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.00000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 52.20000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.13768 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 64.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.27537 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 128.00000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 60.27537 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 128.00000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 60.27537 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 128.00000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 60.27537 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 128.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 60.27537 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 128.00000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 60.27537 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 128.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 VAL A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 TYR A 9 REMARK 465 PHE A 10 REMARK 465 GLN A 11 REMARK 465 SER A 12 REMARK 465 MET A 13 REMARK 465 ASN A 14 REMARK 465 ILE A 15 REMARK 465 THR A 16 REMARK 465 LYS A 17 REMARK 465 GLY A 18 REMARK 465 CYS A 117 REMARK 465 LYS A 118 REMARK 465 MET A 119 REMARK 465 ARG A 120 REMARK 465 LYS A 121 REMARK 465 ARG A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 212 REMARK 465 GLU A 213 REMARK 465 ALA A 214 REMARK 465 GLN A 215 REMARK 465 ASP A 216 REMARK 465 ALA A 217 REMARK 465 GLU A 218 REMARK 465 SER A 219 REMARK 465 ASP A 220 REMARK 465 LEU A 221 REMARK 465 VAL A 222 REMARK 465 ASP A 223 REMARK 465 GLY A 224 REMARK 465 ARG A 225 REMARK 465 HIS A 226 REMARK 465 SER A 227 REMARK 465 PRO A 228 REMARK 465 PRO A 229 REMARK 465 MET A 230 REMARK 465 VAL A 231 REMARK 465 ARG A 232 REMARK 465 SER A 233 REMARK 465 VAL A 234 REMARK 465 ALA A 235 REMARK 465 ALA A 236 REMARK 465 ILE A 237 REMARK 465 HIS A 238 REMARK 465 PRO A 239 REMARK 465 SER A 240 REMARK 465 LEU A 241 REMARK 465 GLU A 242 REMARK 465 ILE A 243 REMARK 465 PRO A 244 REMARK 465 MET A 245 REMARK 465 LEU A 246 REMARK 465 ILE A 247 REMARK 465 PRO A 248 REMARK 465 LYS A 249 REMARK 465 GLU A 250 REMARK 465 LYS A 251 REMARK 465 PRO A 252 REMARK 465 ASP A 369 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 116 CG CD OE1 NE2 REMARK 470 SER A 303 OG REMARK 470 SER A 359 OG REMARK 470 ARG A 363 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 360 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 LEU A 361 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU A 361 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 64 52.17 -98.08 REMARK 500 GLU A 65 158.09 179.01 REMARK 500 ASP A 179 35.65 73.47 REMARK 500 THR A 255 -162.73 -122.23 REMARK 500 ASP A 273 -69.22 -132.97 REMARK 500 SER A 304 -124.43 45.61 REMARK 500 ASP A 305 31.78 -91.22 REMARK 500 CYS A 333 93.78 -170.91 REMARK 500 SER A 342 -32.08 -35.40 REMARK 500 SER A 359 -43.24 -15.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 253 ILE A 254 -147.72 REMARK 500 TYR A 360 LEU A 361 -34.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1370 REMARK 999 REMARK 999 SEQUENCE REMARK 999 OUR CONSTRUCT CONTAINS 1. AN N-TERMINAL HEXAHISTIDINE TAG REMARK 999 2. A NUMBER OF LINKER RESIDUES 3. M13-D369 OF O60256 DBREF 2JI4 A -9 12 PDB 2JI4 2JI4 -9 12 DBREF 2JI4 A 13 369 UNP O60256 KPRB_HUMAN 13 369 SEQRES 1 A 379 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 379 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASN ILE THR SEQRES 3 A 379 LYS GLY GLY LEU VAL LEU PHE SER ALA ASN SER ASN SER SEQRES 4 A 379 SER CYS MET GLU LEU SER LYS LYS ILE ALA GLU ARG LEU SEQRES 5 A 379 GLY VAL GLU MET GLY LYS VAL GLN VAL TYR GLN GLU PRO SEQRES 6 A 379 ASN ARG GLU THR ARG VAL GLN ILE GLN GLU SER VAL ARG SEQRES 7 A 379 GLY LYS ASP VAL PHE ILE ILE GLN THR VAL SER LYS ASP SEQRES 8 A 379 VAL ASN THR THR ILE MET GLU LEU LEU ILE MET VAL TYR SEQRES 9 A 379 ALA CYS LYS THR SER CYS ALA LYS SER ILE ILE GLY VAL SEQRES 10 A 379 ILE PRO TYR PHE PRO TYR SER LYS GLN CYS LYS MET ARG SEQRES 11 A 379 LYS ARG GLY SER ILE VAL SER LYS LEU LEU ALA SER MET SEQRES 12 A 379 MET CYS LYS ALA GLY LEU THR HIS LEU ILE THR MET ASP SEQRES 13 A 379 LEU HIS GLN LYS GLU ILE GLN GLY PHE PHE ASN ILE PRO SEQRES 14 A 379 VAL ASP ASN LEU ARG ALA SER PRO PHE LEU LEU GLN TYR SEQRES 15 A 379 ILE GLN GLU GLU ILE PRO ASP TYR ARG ASN ALA VAL ILE SEQRES 16 A 379 VAL ALA LYS SER PRO ALA SER ALA LYS ARG ALA GLN SER SEQRES 17 A 379 PHE ALA GLU ARG LEU ARG LEU GLY ILE ALA VAL ILE HIS SEQRES 18 A 379 GLY GLU ALA GLN ASP ALA GLU SER ASP LEU VAL ASP GLY SEQRES 19 A 379 ARG HIS SER PRO PRO MET VAL ARG SER VAL ALA ALA ILE SEQRES 20 A 379 HIS PRO SER LEU GLU ILE PRO MET LEU ILE PRO LYS GLU SEQRES 21 A 379 LYS PRO PRO ILE THR VAL VAL GLY ASP VAL GLY GLY ARG SEQRES 22 A 379 ILE ALA ILE ILE VAL ASP ASP ILE ILE ASP ASP VAL ASP SEQRES 23 A 379 SER PHE LEU ALA ALA ALA GLU THR LEU LYS GLU ARG GLY SEQRES 24 A 379 ALA TYR LYS ILE PHE VAL MET ALA THR HIS GLY LEU LEU SEQRES 25 A 379 SER SER ASP ALA PRO ARG ARG ILE GLU GLU SER ALA ILE SEQRES 26 A 379 ASP GLU VAL VAL VAL THR ASN THR ILE PRO HIS GLU VAL SEQRES 27 A 379 GLN LYS LEU GLN CYS PRO LYS ILE LYS THR VAL ASP ILE SEQRES 28 A 379 SER MET ILE LEU SER GLU ALA ILE ARG ARG ILE HIS ASN SEQRES 29 A 379 GLY GLU SER MET SER TYR LEU PHE ARG ASN ILE GLY LEU SEQRES 30 A 379 ASP ASP HET CL A1369 1 HET CL A1370 1 HETNAM CL CHLORIDE ION FORMUL 2 CL 2(CL 1-) FORMUL 4 HOH *38(H2 O) HELIX 1 1 ASN A 28 CYS A 31 5 4 HELIX 2 2 MET A 32 GLY A 43 1 12 HELIX 3 3 ASP A 81 SER A 99 1 19 HELIX 4 4 ILE A 125 ALA A 137 1 13 HELIX 5 5 GLN A 149 PHE A 156 5 8 HELIX 6 6 ALA A 165 ILE A 177 1 13 HELIX 7 7 ASP A 179 ARG A 181 5 3 HELIX 8 8 SER A 189 ALA A 191 5 3 HELIX 9 9 SER A 192 LEU A 203 1 12 HELIX 10 10 VAL A 275 ARG A 288 1 14 HELIX 11 11 ASP A 305 SER A 313 1 9 HELIX 12 12 HIS A 326 GLN A 332 1 7 HELIX 13 13 ILE A 341 GLY A 355 1 15 SHEET 1 AA 5 VAL A 21 SER A 24 0 SHEET 2 AA 5 ASP A 71 ILE A 75 1 O ASP A 71 N VAL A 21 SHEET 3 AA 5 SER A 103 VAL A 107 1 O SER A 103 N VAL A 72 SHEET 4 AA 5 HIS A 141 MET A 145 1 O HIS A 141 N GLY A 106 SHEET 5 AA 5 VAL A 160 LEU A 163 1 O ASP A 161 N THR A 144 SHEET 1 AB 2 VAL A 49 GLN A 53 0 SHEET 2 AB 2 THR A 59 ILE A 63 -1 O ARG A 60 N TYR A 52 SHEET 1 AC 7 VAL A 256 VAL A 257 0 SHEET 2 AC 7 GLY A 206 ILE A 210 -1 O VAL A 209 N VAL A 257 SHEET 3 AC 7 ALA A 183 ALA A 187 1 O ALA A 183 N GLY A 206 SHEET 4 AC 7 ILE A 264 ILE A 272 1 O ILE A 264 N VAL A 184 SHEET 5 AC 7 LYS A 292 GLY A 300 1 O LYS A 292 N ALA A 265 SHEET 6 AC 7 GLU A 317 THR A 321 1 O GLU A 317 N VAL A 295 SHEET 7 AC 7 ILE A 336 VAL A 339 1 O LYS A 337 N VAL A 320 CISPEP 1 GLY A 19 LEU A 20 0 -1.88 CISPEP 2 LEU A 367 ASP A 368 0 14.92 SITE 1 AC1 3 ASP A 146 ALA A 165 SER A 166 SITE 1 AC2 3 GLN A 116 HIS A 148 GLN A 149 CRYST1 104.400 104.400 192.000 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009579 0.005530 0.000000 0.00000 SCALE2 0.000000 0.011060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005208 0.00000