HEADER LYASE 26-FEB-07 2JI7
TITLE X-RAY STRUCTURE OF OXALYL-COA DECARBOXYLASE WITH COVALENT REACTION
TITLE 2 INTERMEDIATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: OXALYL-COA DECARBOXYLASE;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: OXALYL-COENZYME A DECARBOXYLASE;
COMPND 5 EC: 4.1.1.8;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: OXALOBACTER FORMIGENES;
SOURCE 3 ORGANISM_TAXID: 847;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET9A
KEYWDS LYASE, FLAVOPROTEIN, DECARBOXYLASE, OXALATE DEGRADATION, INTERMEDIATE
KEYWDS 2 COMPLEX, THIAMIN DIPHOSPHATE-DEPENDENT, THIAMINE PYROPHOSPHATE, NON-
KEYWDS 3 OXIDATIVE DECARBOXYLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.L.BERTHOLD,C.G.TOYOTA,P.MOUSSATCHE,M.D.WOOD,F.LEEPER,
AUTHOR 2 N.G.J.RICHARDS,Y.LINDQVIST
REVDAT 5 13-DEC-23 2JI7 1 LINK
REVDAT 4 13-JUL-11 2JI7 1 VERSN
REVDAT 3 24-FEB-09 2JI7 1 VERSN
REVDAT 2 14-AUG-07 2JI7 1 JRNL
REVDAT 1 17-JUL-07 2JI7 0
JRNL AUTH C.L.BERTHOLD,C.G.TOYOTA,P.MOUSSATCHE,M.D.WOOD,F.LEEPER,
JRNL AUTH 2 N.G.J.RICHARDS,Y.LINDQVIST
JRNL TITL CRYSTALLOGRAPHIC SNAPSHOTS OF OXALYL-COA DECARBOXYLASE GIVE
JRNL TITL 2 INSIGHTS INTO CATALYSIS BY NONOXIDATIVE THDP-DEPENDENT
JRNL TITL 3 DECARBOXYLASES
JRNL REF STRUCTURE V. 15 853 2007
JRNL REFN ISSN 0969-2126
JRNL PMID 17637344
JRNL DOI 10.1016/J.STR.2007.06.001
REMARK 2
REMARK 2 RESOLUTION. 1.82 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.2.0019
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1
REMARK 3 NUMBER OF REFLECTIONS : 118269
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.151
REMARK 3 R VALUE (WORKING SET) : 0.150
REMARK 3 FREE R VALUE : 0.176
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700
REMARK 3 FREE R VALUE TEST SET COUNT : 5831
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87
REMARK 3 REFLECTION IN BIN (WORKING SET) : 8732
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : 0.2730
REMARK 3 BIN FREE R VALUE SET COUNT : 409
REMARK 3 BIN FREE R VALUE : 0.3080
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 8348
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 342
REMARK 3 SOLVENT ATOMS : 1185
REMARK 3
REMARK 3 B VALUES.
REMARK 3 B VALUE TYPE : LIKELY RESIDUAL
REMARK 3 FROM WILSON PLOT (A**2) : 18.66
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.91
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.17000
REMARK 3 B22 (A**2) : 1.17000
REMARK 3 B33 (A**2) : -1.76000
REMARK 3 B12 (A**2) : 0.59000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.099
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.325
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8949 ; 0.008 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): 6057 ; 0.010 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12161 ; 1.425 ; 2.015
REMARK 3 BOND ANGLES OTHERS (DEGREES): 14718 ; 1.622 ; 3.005
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1152 ; 5.641 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 341 ;36.749 ;24.839
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1494 ;12.422 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;16.262 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1355 ; 0.138 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9796 ; 0.003 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 1614 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1888 ; 0.200 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6475 ; 0.181 ; 0.200
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4381 ; 0.167 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): 4327 ; 0.085 ; 0.200
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 960 ; 0.118 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.135 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): 84 ; 0.270 ; 0.200
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 54 ; 0.162 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5835 ; 0.804 ; 3.000
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8972 ; 1.086 ; 4.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3630 ; 1.222 ; 4.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3171 ; 1.824 ; 5.000
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 7 A 565
REMARK 3 ORIGIN FOR THE GROUP (A): 63.5119 -17.6365 -5.0880
REMARK 3 T TENSOR
REMARK 3 T11: -0.1473 T22: -0.1340
REMARK 3 T33: -0.1366 T12: -0.0402
REMARK 3 T13: 0.0106 T23: -0.0028
REMARK 3 L TENSOR
REMARK 3 L11: 0.1231 L22: 0.5090
REMARK 3 L33: 0.8519 L12: -0.1380
REMARK 3 L13: -0.0472 L23: 0.0886
REMARK 3 S TENSOR
REMARK 3 S11: 0.0064 S12: -0.0248 S13: -0.0249
REMARK 3 S21: 0.0711 S22: -0.0155 S23: -0.0062
REMARK 3 S31: 0.1217 S32: 0.0132 S33: 0.0091
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 7 B 565
REMARK 3 ORIGIN FOR THE GROUP (A): 56.0422 16.3163 -4.0054
REMARK 3 T TENSOR
REMARK 3 T11: -0.1582 T22: -0.1131
REMARK 3 T33: -0.1357 T12: -0.0073
REMARK 3 T13: 0.0059 T23: -0.0324
REMARK 3 L TENSOR
REMARK 3 L11: 0.2232 L22: 0.6588
REMARK 3 L33: 0.7248 L12: -0.1437
REMARK 3 L13: 0.0203 L23: -0.0368
REMARK 3 S TENSOR
REMARK 3 S11: 0.0162 S12: -0.0378 S13: 0.0333
REMARK 3 S21: 0.0730 S22: -0.0206 S23: 0.0641
REMARK 3 S31: -0.0835 S32: -0.1250 S33: 0.0044
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS.
REMARK 4
REMARK 4 2JI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-07.
REMARK 100 THE DEPOSITION ID IS D_1290031629.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 09-SEP-06
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID14-4
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.976
REMARK 200 MONOCHROMATOR : THIN DIAMOND DOUBLE CRYSTALS
REMARK 200 OPTICS : TOROIDAL MIRROR
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124184
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820
REMARK 200 RESOLUTION RANGE LOW (A) : 76.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 200 DATA REDUNDANCY : 3.700
REMARK 200 R MERGE (I) : 0.09000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9
REMARK 200 DATA REDUNDANCY IN SHELL : 3.70
REMARK 200 R MERGE FOR SHELL (I) : 0.48000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: PDB ENTRY 2C31
REMARK 200
REMARK 200 REMARK: NONE
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 57.20
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.64600
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.29200
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.29200
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.64600
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PQS
REMARK 350 TOTAL BURIED SURFACE AREA: 29720 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 79790 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -172.8 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -50.64600
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH B2184 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 SER A 2
REMARK 465 ASN A 3
REMARK 465 ASP A 4
REMARK 465 ASP A 5
REMARK 465 ASN A 6
REMARK 465 GLY A 566
REMARK 465 LYS A 567
REMARK 465 LYS A 568
REMARK 465 MET B 1
REMARK 465 SER B 2
REMARK 465 ASN B 3
REMARK 465 ASP B 4
REMARK 465 ASP B 5
REMARK 465 ASN B 6
REMARK 465 GLY B 566
REMARK 465 LYS B 567
REMARK 465 LYS B 568
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 2147 O HOH B 2170 2.14
REMARK 500 O HOH B 2028 O HOH B 2072 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 2245 O HOH A 2541 3654 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 81 -80.84 -0.59
REMARK 500 SER A 108 -149.07 -91.71
REMARK 500 THR A 265 43.13 -141.63
REMARK 500 ASN A 284 -158.34 -100.97
REMARK 500 ASN A 315 -55.02 -126.37
REMARK 500 ALA A 401 -85.72 -103.23
REMARK 500 ASP A 421 -169.24 -126.15
REMARK 500 TYR A 483 -53.99 76.85
REMARK 500 SER A 553 19.93 57.46
REMARK 500 ALA B 81 -83.63 2.54
REMARK 500 SER B 108 -153.67 -92.12
REMARK 500 MET B 123 142.78 -170.02
REMARK 500 ASN B 284 -159.08 -100.23
REMARK 500 ASN B 315 -53.29 -127.97
REMARK 500 ALA B 401 -85.19 -105.86
REMARK 500 ASP B 421 -168.67 -127.83
REMARK 500 TYR B 483 -56.52 73.66
REMARK 500 SER B 553 19.84 58.97
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A2056 DISTANCE = 5.84 ANGSTROMS
REMARK 525 HOH A2063 DISTANCE = 6.00 ANGSTROMS
REMARK 525 HOH A2137 DISTANCE = 5.92 ANGSTROMS
REMARK 525 HOH B2034 DISTANCE = 7.98 ANGSTROMS
REMARK 525 HOH B2258 DISTANCE = 5.83 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A1567 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 452 OD1
REMARK 620 2 ASN A 479 OD1 89.9
REMARK 620 3 GLY A 481 O 93.3 91.6
REMARK 620 4 OXT A1566 O1A 81.7 168.4 96.8
REMARK 620 5 OXT A1566 O3B 161.4 105.9 95.9 81.2
REMARK 620 6 HOH A2479 O 84.4 86.5 177.1 84.8 86.7
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B1567 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP B 452 OD1
REMARK 620 2 ASN B 479 OD1 88.0
REMARK 620 3 GLY B 481 O 92.6 92.5
REMARK 620 4 OXT B1566 O1A 80.7 166.7 95.0
REMARK 620 5 OXT B1566 O3B 161.2 109.1 94.2 81.3
REMARK 620 6 HOH B2483 O 80.7 88.2 173.3 83.1 91.9
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXT B1566
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXT A1566
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1567
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1567
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B1568
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A1568
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A1569
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B1569
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P A1570
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P B1570
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P B1571
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P A1571
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P B1572
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P A1572
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 2C31 RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF OXALYL-COA DECARBOXYLASE IN COMPLEX WITH THE
REMARK 900 COFACTOR DERIVATIVE THIAMIN-2-THIAZOLONE DIPHOSPHATE AND ADENOSINE
REMARK 900 DIPHOSPHATE
REMARK 900 RELATED ID: 2JI6 RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE OF OXALYL-COA DECARBOXYLASE IN COMPLEX WITH 3-DEAZA-
REMARK 900 THDP AND OXALYL -COA
REMARK 900 RELATED ID: 2JI8 RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE OF OXALYL-COA DECARBOXYLASE IN COMPLEX WITH FORMYL-
REMARK 900 COA
REMARK 900 RELATED ID: 2JI9 RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE OF OXALYL-COA DECARBOXYLASE IN COMPLEX WITH 3-DEAZA-
REMARK 900 THDP
REMARK 900 RELATED ID: 2JIB RELATED DB: PDB
REMARK 900 X-RAY STRUCTURE OF OXALYL-COA DECARBOXYLASE IN COMPLEX WITH
REMARK 900 COENZYME-A
DBREF 2JI7 A 1 568 UNP P40149 OXC_OXAFO 1 568
DBREF 2JI7 B 1 568 UNP P40149 OXC_OXAFO 1 568
SEQRES 1 A 568 MET SER ASN ASP ASP ASN VAL GLU LEU THR ASP GLY PHE
SEQRES 2 A 568 HIS VAL LEU ILE ASP ALA LEU LYS MET ASN ASP ILE ASP
SEQRES 3 A 568 THR MET TYR GLY VAL VAL GLY ILE PRO ILE THR ASN LEU
SEQRES 4 A 568 ALA ARG MET TRP GLN ASP ASP GLY GLN ARG PHE TYR SER
SEQRES 5 A 568 PHE ARG HIS GLU GLN HIS ALA GLY TYR ALA ALA SER ILE
SEQRES 6 A 568 ALA GLY TYR ILE GLU GLY LYS PRO GLY VAL CYS LEU THR
SEQRES 7 A 568 VAL SER ALA PRO GLY PHE LEU ASN GLY VAL THR SER LEU
SEQRES 8 A 568 ALA HIS ALA THR THR ASN CYS PHE PRO MET ILE LEU LEU
SEQRES 9 A 568 SER GLY SER SER GLU ARG GLU ILE VAL ASP LEU GLN GLN
SEQRES 10 A 568 GLY ASP TYR GLU GLU MET ASP GLN MET ASN VAL ALA ARG
SEQRES 11 A 568 PRO HIS CYS LYS ALA SER PHE ARG ILE ASN SER ILE LYS
SEQRES 12 A 568 ASP ILE PRO ILE GLY ILE ALA ARG ALA VAL ARG THR ALA
SEQRES 13 A 568 VAL SER GLY ARG PRO GLY GLY VAL TYR VAL ASP LEU PRO
SEQRES 14 A 568 ALA LYS LEU PHE GLY GLN THR ILE SER VAL GLU GLU ALA
SEQRES 15 A 568 ASN LYS LEU LEU PHE LYS PRO ILE ASP PRO ALA PRO ALA
SEQRES 16 A 568 GLN ILE PRO ALA GLU ASP ALA ILE ALA ARG ALA ALA ASP
SEQRES 17 A 568 LEU ILE LYS ASN ALA LYS ARG PRO VAL ILE MET LEU GLY
SEQRES 18 A 568 LYS GLY ALA ALA TYR ALA GLN CYS ASP ASP GLU ILE ARG
SEQRES 19 A 568 ALA LEU VAL GLU GLU THR GLY ILE PRO PHE LEU PRO MET
SEQRES 20 A 568 GLY MET ALA LYS GLY LEU LEU PRO ASP ASN HIS PRO GLN
SEQRES 21 A 568 SER ALA ALA ALA THR ARG ALA PHE ALA LEU ALA GLN CYS
SEQRES 22 A 568 ASP VAL CYS VAL LEU ILE GLY ALA ARG LEU ASN TRP LEU
SEQRES 23 A 568 MET GLN HIS GLY LYS GLY LYS THR TRP GLY ASP GLU LEU
SEQRES 24 A 568 LYS LYS TYR VAL GLN ILE ASP ILE GLN ALA ASN GLU MET
SEQRES 25 A 568 ASP SER ASN GLN PRO ILE ALA ALA PRO VAL VAL GLY ASP
SEQRES 26 A 568 ILE LYS SER ALA VAL SER LEU LEU ARG LYS ALA LEU LYS
SEQRES 27 A 568 GLY ALA PRO LYS ALA ASP ALA GLU TRP THR GLY ALA LEU
SEQRES 28 A 568 LYS ALA LYS VAL ASP GLY ASN LYS ALA LYS LEU ALA GLY
SEQRES 29 A 568 LYS MET THR ALA GLU THR PRO SER GLY MET MET ASN TYR
SEQRES 30 A 568 SER ASN SER LEU GLY VAL VAL ARG ASP PHE MET LEU ALA
SEQRES 31 A 568 ASN PRO ASP ILE SER LEU VAL ASN GLU GLY ALA ASN ALA
SEQRES 32 A 568 LEU ASP ASN THR ARG MET ILE VAL ASP MET LEU LYS PRO
SEQRES 33 A 568 ARG LYS ARG LEU ASP SER GLY THR TRP GLY VAL MET GLY
SEQRES 34 A 568 ILE GLY MET GLY TYR CYS VAL ALA ALA ALA ALA VAL THR
SEQRES 35 A 568 GLY LYS PRO VAL ILE ALA VAL GLU GLY ASP SER ALA PHE
SEQRES 36 A 568 GLY PHE SER GLY MET GLU LEU GLU THR ILE CYS ARG TYR
SEQRES 37 A 568 ASN LEU PRO VAL THR VAL ILE ILE MET ASN ASN GLY GLY
SEQRES 38 A 568 ILE TYR LYS GLY ASN GLU ALA ASP PRO GLN PRO GLY VAL
SEQRES 39 A 568 ILE SER CYS THR ARG LEU THR ARG GLY ARG TYR ASP MET
SEQRES 40 A 568 MET MET GLU ALA PHE GLY GLY LYS GLY TYR VAL ALA ASN
SEQRES 41 A 568 THR PRO ALA GLU LEU LYS ALA ALA LEU GLU GLU ALA VAL
SEQRES 42 A 568 ALA SER GLY LYS PRO CYS LEU ILE ASN ALA MET ILE ASP
SEQRES 43 A 568 PRO ASP ALA GLY VAL GLU SER GLY ARG ILE LYS SER LEU
SEQRES 44 A 568 ASN VAL VAL SER LYS VAL GLY LYS LYS
SEQRES 1 B 568 MET SER ASN ASP ASP ASN VAL GLU LEU THR ASP GLY PHE
SEQRES 2 B 568 HIS VAL LEU ILE ASP ALA LEU LYS MET ASN ASP ILE ASP
SEQRES 3 B 568 THR MET TYR GLY VAL VAL GLY ILE PRO ILE THR ASN LEU
SEQRES 4 B 568 ALA ARG MET TRP GLN ASP ASP GLY GLN ARG PHE TYR SER
SEQRES 5 B 568 PHE ARG HIS GLU GLN HIS ALA GLY TYR ALA ALA SER ILE
SEQRES 6 B 568 ALA GLY TYR ILE GLU GLY LYS PRO GLY VAL CYS LEU THR
SEQRES 7 B 568 VAL SER ALA PRO GLY PHE LEU ASN GLY VAL THR SER LEU
SEQRES 8 B 568 ALA HIS ALA THR THR ASN CYS PHE PRO MET ILE LEU LEU
SEQRES 9 B 568 SER GLY SER SER GLU ARG GLU ILE VAL ASP LEU GLN GLN
SEQRES 10 B 568 GLY ASP TYR GLU GLU MET ASP GLN MET ASN VAL ALA ARG
SEQRES 11 B 568 PRO HIS CYS LYS ALA SER PHE ARG ILE ASN SER ILE LYS
SEQRES 12 B 568 ASP ILE PRO ILE GLY ILE ALA ARG ALA VAL ARG THR ALA
SEQRES 13 B 568 VAL SER GLY ARG PRO GLY GLY VAL TYR VAL ASP LEU PRO
SEQRES 14 B 568 ALA LYS LEU PHE GLY GLN THR ILE SER VAL GLU GLU ALA
SEQRES 15 B 568 ASN LYS LEU LEU PHE LYS PRO ILE ASP PRO ALA PRO ALA
SEQRES 16 B 568 GLN ILE PRO ALA GLU ASP ALA ILE ALA ARG ALA ALA ASP
SEQRES 17 B 568 LEU ILE LYS ASN ALA LYS ARG PRO VAL ILE MET LEU GLY
SEQRES 18 B 568 LYS GLY ALA ALA TYR ALA GLN CYS ASP ASP GLU ILE ARG
SEQRES 19 B 568 ALA LEU VAL GLU GLU THR GLY ILE PRO PHE LEU PRO MET
SEQRES 20 B 568 GLY MET ALA LYS GLY LEU LEU PRO ASP ASN HIS PRO GLN
SEQRES 21 B 568 SER ALA ALA ALA THR ARG ALA PHE ALA LEU ALA GLN CYS
SEQRES 22 B 568 ASP VAL CYS VAL LEU ILE GLY ALA ARG LEU ASN TRP LEU
SEQRES 23 B 568 MET GLN HIS GLY LYS GLY LYS THR TRP GLY ASP GLU LEU
SEQRES 24 B 568 LYS LYS TYR VAL GLN ILE ASP ILE GLN ALA ASN GLU MET
SEQRES 25 B 568 ASP SER ASN GLN PRO ILE ALA ALA PRO VAL VAL GLY ASP
SEQRES 26 B 568 ILE LYS SER ALA VAL SER LEU LEU ARG LYS ALA LEU LYS
SEQRES 27 B 568 GLY ALA PRO LYS ALA ASP ALA GLU TRP THR GLY ALA LEU
SEQRES 28 B 568 LYS ALA LYS VAL ASP GLY ASN LYS ALA LYS LEU ALA GLY
SEQRES 29 B 568 LYS MET THR ALA GLU THR PRO SER GLY MET MET ASN TYR
SEQRES 30 B 568 SER ASN SER LEU GLY VAL VAL ARG ASP PHE MET LEU ALA
SEQRES 31 B 568 ASN PRO ASP ILE SER LEU VAL ASN GLU GLY ALA ASN ALA
SEQRES 32 B 568 LEU ASP ASN THR ARG MET ILE VAL ASP MET LEU LYS PRO
SEQRES 33 B 568 ARG LYS ARG LEU ASP SER GLY THR TRP GLY VAL MET GLY
SEQRES 34 B 568 ILE GLY MET GLY TYR CYS VAL ALA ALA ALA ALA VAL THR
SEQRES 35 B 568 GLY LYS PRO VAL ILE ALA VAL GLU GLY ASP SER ALA PHE
SEQRES 36 B 568 GLY PHE SER GLY MET GLU LEU GLU THR ILE CYS ARG TYR
SEQRES 37 B 568 ASN LEU PRO VAL THR VAL ILE ILE MET ASN ASN GLY GLY
SEQRES 38 B 568 ILE TYR LYS GLY ASN GLU ALA ASP PRO GLN PRO GLY VAL
SEQRES 39 B 568 ILE SER CYS THR ARG LEU THR ARG GLY ARG TYR ASP MET
SEQRES 40 B 568 MET MET GLU ALA PHE GLY GLY LYS GLY TYR VAL ALA ASN
SEQRES 41 B 568 THR PRO ALA GLU LEU LYS ALA ALA LEU GLU GLU ALA VAL
SEQRES 42 B 568 ALA SER GLY LYS PRO CYS LEU ILE ASN ALA MET ILE ASP
SEQRES 43 B 568 PRO ASP ALA GLY VAL GLU SER GLY ARG ILE LYS SER LEU
SEQRES 44 B 568 ASN VAL VAL SER LYS VAL GLY LYS LYS
HET OXT A1566 76
HET MG A1567 1
HET ADP A1568 27
HET PGE A1569 10
HET B3P A1570 19
HET B3P A1571 19
HET B3P A1572 19
HET OXT B1566 76
HET MG B1567 1
HET ADP B1568 27
HET PGE B1569 10
HET B3P B1570 19
HET B3P B1571 19
HET B3P B1572 19
HETNAM OXT 3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-{(1R,11R,
HETNAM 2 OXT 15S,17R)-19-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-
HETNAM 3 OXT 4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-1,11,
HETNAM 4 OXT 15,17-TETRAHYDROXY-12,12-DIMETHYL-15,17-DIOXIDO-6,10-
HETNAM 5 OXT DIOXO-14,16,18-TRIOXA-2-THIA-5,9-DIAZA-15,17-
HETNAM 6 OXT DIPHOSPHANONADEC-1-YL}-5-(2-{[(R)-
HETNAM 7 OXT HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,
HETNAM 8 OXT 3-THIAZOL-3-IUM
HETNAM MG MAGNESIUM ION
HETNAM ADP ADENOSINE-5'-DIPHOSPHATE
HETNAM PGE TRIETHYLENE GLYCOL
HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-
HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
FORMUL 3 OXT 2(C34 H55 N11 O24 P5 S2 1+)
FORMUL 4 MG 2(MG 2+)
FORMUL 5 ADP 2(C10 H15 N5 O10 P2)
FORMUL 6 PGE 2(C6 H14 O4)
FORMUL 7 B3P 6(C11 H26 N2 O6)
FORMUL 17 HOH *1185(H2 O)
HELIX 1 1 GLY A 12 ASN A 23 1 12
HELIX 2 2 ILE A 36 ASP A 46 1 11
HELIX 3 3 HIS A 55 GLY A 71 1 17
HELIX 4 4 SER A 80 CYS A 98 1 19
HELIX 5 5 GLU A 109 LEU A 115 1 7
HELIX 6 6 ASP A 124 ALA A 129 1 6
HELIX 7 7 ARG A 130 CYS A 133 5 4
HELIX 8 8 SER A 141 LYS A 143 5 3
HELIX 9 9 ASP A 144 SER A 158 1 15
HELIX 10 10 ALA A 170 GLY A 174 1 5
HELIX 11 11 VAL A 179 LEU A 186 1 8
HELIX 12 12 ALA A 199 ASN A 212 1 14
HELIX 13 13 GLY A 221 ALA A 227 1 7
HELIX 14 14 CYS A 229 GLY A 241 1 13
HELIX 15 15 ALA A 262 ALA A 264 5 3
HELIX 16 16 THR A 265 CYS A 273 1 9
HELIX 17 17 ASN A 284 LYS A 291 5 8
HELIX 18 18 GLY A 292 GLY A 296 5 5
HELIX 19 19 GLN A 308 MET A 312 5 5
HELIX 20 20 ASP A 325 LEU A 337 1 13
HELIX 21 21 ASP A 344 THR A 367 1 24
HELIX 22 22 ASN A 376 ASN A 391 1 16
HELIX 23 23 ALA A 401 VAL A 411 1 11
HELIX 24 24 ILE A 430 GLY A 443 1 14
HELIX 25 25 ASP A 452 PHE A 457 1 6
HELIX 26 26 SER A 458 MET A 460 5 3
HELIX 27 27 GLU A 461 TYR A 468 1 8
HELIX 28 28 ARG A 504 PHE A 512 1 9
HELIX 29 29 THR A 521 GLY A 536 1 16
HELIX 30 30 SER A 553 ASN A 560 5 8
HELIX 31 31 GLY B 12 ASN B 23 1 12
HELIX 32 32 ILE B 36 ASP B 46 1 11
HELIX 33 33 HIS B 55 GLY B 71 1 17
HELIX 34 34 SER B 80 CYS B 98 1 19
HELIX 35 35 GLU B 109 LEU B 115 1 7
HELIX 36 36 ASP B 124 ARG B 130 1 7
HELIX 37 37 PRO B 131 CYS B 133 5 3
HELIX 38 38 SER B 141 LYS B 143 5 3
HELIX 39 39 ASP B 144 SER B 158 1 15
HELIX 40 40 ALA B 170 GLY B 174 1 5
HELIX 41 41 VAL B 179 LEU B 186 1 8
HELIX 42 42 ALA B 199 ASN B 212 1 14
HELIX 43 43 GLY B 221 ALA B 227 1 7
HELIX 44 44 CYS B 229 GLY B 241 1 13
HELIX 45 45 ALA B 262 ALA B 264 5 3
HELIX 46 46 THR B 265 CYS B 273 1 9
HELIX 47 47 ASN B 284 LYS B 291 5 8
HELIX 48 48 GLY B 292 GLY B 296 5 5
HELIX 49 49 GLN B 308 MET B 312 5 5
HELIX 50 50 ASP B 325 LEU B 337 1 13
HELIX 51 51 ASP B 344 THR B 367 1 24
HELIX 52 52 ASN B 376 ASN B 391 1 16
HELIX 53 53 ALA B 401 VAL B 411 1 11
HELIX 54 54 ILE B 430 GLY B 443 1 14
HELIX 55 55 ASP B 452 PHE B 457 1 6
HELIX 56 56 SER B 458 MET B 460 5 3
HELIX 57 57 GLU B 461 TYR B 468 1 8
HELIX 58 58 ARG B 504 PHE B 512 1 9
HELIX 59 59 THR B 521 GLY B 536 1 16
HELIX 60 60 SER B 553 ASN B 560 5 8
SHEET 1 AA 2 LEU A 9 ASP A 11 0
SHEET 2 AA 2 THR A 176 SER A 178 -1 O ILE A 177 N THR A 10
SHEET 1 AB 6 ARG A 49 SER A 52 0
SHEET 2 AB 6 THR A 27 GLY A 30 1 O MET A 28 N TYR A 51
SHEET 3 AB 6 GLY A 74 THR A 78 1 O VAL A 75 N TYR A 29
SHEET 4 AB 6 MET A 101 SER A 107 1 O ILE A 102 N CYS A 76
SHEET 5 AB 6 GLY A 163 PRO A 169 1 O VAL A 164 N LEU A 103
SHEET 6 AB 6 ALA A 135 ARG A 138 1 O ALA A 135 N TYR A 165
SHEET 1 AC 5 PHE A 244 PRO A 246 0
SHEET 2 AC 5 VAL A 217 LEU A 220 1 O ILE A 218 N LEU A 245
SHEET 3 AC 5 VAL A 275 ILE A 279 1 O VAL A 275 N VAL A 217
SHEET 4 AC 5 LYS A 301 ASP A 306 1 O LYS A 301 N CYS A 276
SHEET 5 AC 5 ALA A 320 VAL A 323 1 O ALA A 320 N GLN A 304
SHEET 1 AD 6 ARG A 419 ASP A 421 0
SHEET 2 AD 6 SER A 395 GLU A 399 1 O LEU A 396 N LEU A 420
SHEET 3 AD 6 VAL A 446 GLY A 451 1 O ILE A 447 N VAL A 397
SHEET 4 AD 6 VAL A 472 ASN A 478 1 O THR A 473 N ALA A 448
SHEET 5 AD 6 CYS A 539 MET A 544 1 O CYS A 539 N VAL A 474
SHEET 6 AD 6 LYS A 515 ALA A 519 1 O LYS A 515 N LEU A 540
SHEET 1 BA 2 LEU B 9 ASP B 11 0
SHEET 2 BA 2 THR B 176 SER B 178 -1 O ILE B 177 N THR B 10
SHEET 1 BB 6 ARG B 49 SER B 52 0
SHEET 2 BB 6 THR B 27 GLY B 30 1 O MET B 28 N TYR B 51
SHEET 3 BB 6 GLY B 74 THR B 78 1 O VAL B 75 N TYR B 29
SHEET 4 BB 6 MET B 101 SER B 107 1 O ILE B 102 N CYS B 76
SHEET 5 BB 6 GLY B 163 PRO B 169 1 O VAL B 164 N LEU B 103
SHEET 6 BB 6 ALA B 135 ARG B 138 1 O ALA B 135 N TYR B 165
SHEET 1 BC 5 PHE B 244 PRO B 246 0
SHEET 2 BC 5 VAL B 217 LEU B 220 1 O ILE B 218 N LEU B 245
SHEET 3 BC 5 VAL B 275 ILE B 279 1 O VAL B 275 N VAL B 217
SHEET 4 BC 5 LYS B 301 ASP B 306 1 O LYS B 301 N CYS B 276
SHEET 5 BC 5 ALA B 320 VAL B 323 1 O ALA B 320 N GLN B 304
SHEET 1 BD 6 ARG B 419 ASP B 421 0
SHEET 2 BD 6 SER B 395 GLU B 399 1 O LEU B 396 N LEU B 420
SHEET 3 BD 6 VAL B 446 GLY B 451 1 O ILE B 447 N VAL B 397
SHEET 4 BD 6 VAL B 472 ASN B 478 1 O THR B 473 N ALA B 448
SHEET 5 BD 6 CYS B 539 MET B 544 1 O CYS B 539 N VAL B 474
SHEET 6 BD 6 LYS B 515 ALA B 519 1 O LYS B 515 N LEU B 540
LINK OD1 ASP A 452 MG MG A1567 1555 1555 2.10
LINK OD1 ASN A 479 MG MG A1567 1555 1555 2.13
LINK O GLY A 481 MG MG A1567 1555 1555 2.13
LINK O1A OXT A1566 MG MG A1567 1555 1555 2.15
LINK O3B OXT A1566 MG MG A1567 1555 1555 2.02
LINK MG MG A1567 O HOH A2479 1555 1555 2.32
LINK OD1 ASP B 452 MG MG B1567 1555 1555 2.16
LINK OD1 ASN B 479 MG MG B1567 1555 1555 2.09
LINK O GLY B 481 MG MG B1567 1555 1555 2.17
LINK O1A OXT B1566 MG MG B1567 1555 1555 2.14
LINK O3B OXT B1566 MG MG B1567 1555 1555 1.99
LINK MG MG B1567 O HOH B2483 1555 1555 2.18
CISPEP 1 ILE A 34 PRO A 35 0 -0.33
CISPEP 2 ILE B 34 PRO B 35 0 1.20
SITE 1 AC1 51 VAL A 32 GLU A 56 VAL A 79 ASN A 86
SITE 2 AC1 51 TYR A 120 GLU A 121 HOH A2032 ALA B 263
SITE 3 AC1 51 ALA B 264 THR B 265 ARG B 266 ALA B 267
SITE 4 AC1 51 TRP B 285 LEU B 286 ASN B 358 LYS B 359
SITE 5 AC1 51 LEU B 362 TYR B 377 GLY B 400 ALA B 401
SITE 6 AC1 51 ASN B 402 ALA B 403 LEU B 404 ASP B 405
SITE 7 AC1 51 ARG B 408 MET B 409 GLY B 426 MET B 428
SITE 8 AC1 51 GLY B 451 ASP B 452 SER B 453 ALA B 454
SITE 9 AC1 51 PHE B 457 ASN B 479 GLY B 481 ILE B 482
SITE 10 AC1 51 TYR B 483 ARG B 555 MG B1567 HOH B2437
SITE 11 AC1 51 HOH B2457 HOH B2483 HOH B2559 HOH B2571
SITE 12 AC1 51 HOH B2572 HOH B2573 HOH B2574 HOH B2575
SITE 13 AC1 51 HOH B2576 HOH B2577 HOH B2578
SITE 1 AC2 53 ALA A 263 ALA A 264 THR A 265 ARG A 266
SITE 2 AC2 53 ALA A 267 TRP A 285 LEU A 286 ASN A 358
SITE 3 AC2 53 LYS A 359 LEU A 362 TYR A 377 GLY A 400
SITE 4 AC2 53 ALA A 401 ASN A 402 ALA A 403 LEU A 404
SITE 5 AC2 53 ASP A 405 ARG A 408 MET A 409 GLY A 426
SITE 6 AC2 53 MET A 428 GLY A 451 ASP A 452 SER A 453
SITE 7 AC2 53 ALA A 454 PHE A 457 ASN A 479 GLY A 481
SITE 8 AC2 53 ILE A 482 TYR A 483 ARG A 555 MG A1567
SITE 9 AC2 53 HOH A2435 HOH A2436 HOH A2457 HOH A2479
SITE 10 AC2 53 HOH A2556 HOH A2570 HOH A2571 HOH A2572
SITE 11 AC2 53 HOH A2573 HOH A2574 HOH A2575 HOH A2576
SITE 12 AC2 53 HOH A2577 HOH A2578 VAL B 32 GLU B 56
SITE 13 AC2 53 VAL B 79 ASN B 86 TYR B 120 GLU B 121
SITE 14 AC2 53 HOH B2039
SITE 1 AC3 5 ASP B 452 ASN B 479 GLY B 481 OXT B1566
SITE 2 AC3 5 HOH B2483
SITE 1 AC4 5 ASP A 452 ASN A 479 GLY A 481 OXT A1566
SITE 2 AC4 5 HOH A2479
SITE 1 AC5 19 ARG B 160 GLY B 221 LYS B 222 GLY B 223
SITE 2 AC5 19 TYR B 226 MET B 247 GLY B 280 ARG B 282
SITE 3 AC5 19 LEU B 286 ASP B 306 ILE B 307 GLY B 324
SITE 4 AC5 19 ASP B 325 ILE B 326 HOH B2308 HOH B2579
SITE 5 AC5 19 HOH B2580 HOH B2581 HOH B2583
SITE 1 AC6 19 ARG A 160 GLY A 221 LYS A 222 GLY A 223
SITE 2 AC6 19 TYR A 226 MET A 247 GLY A 280 ALA A 281
SITE 3 AC6 19 ARG A 282 LEU A 286 ASP A 306 ILE A 307
SITE 4 AC6 19 GLY A 324 ASP A 325 ILE A 326 HOH A2266
SITE 5 AC6 19 HOH A2458 HOH A2580 HOH A2581
SITE 1 AC7 5 GLU A 70 ALA A 193 TYR A 226 HOH A2270
SITE 2 AC7 5 HOH A2583
SITE 1 AC8 6 ALA B 193 ALA B 227 GLN B 228 HOH B2284
SITE 2 AC8 6 HOH B2582 HOH B2583
SITE 1 AC9 7 ASP A 489 GLY A 493 VAL A 494 ARG A 499
SITE 2 AC9 7 HOH A2584 ASN B 469 LYS B 537
SITE 1 BC1 7 GLU A 369 MET B 366 THR B 367 GLY B 382
SITE 2 BC1 7 ARG B 385 ASP B 386 HOH B2585
SITE 1 BC2 6 ASN A 469 HOH A2474 ASP B 489 GLY B 493
SITE 2 BC2 6 VAL B 494 ARG B 499
SITE 1 BC3 9 MET A 366 THR A 367 GLY A 382 VAL A 383
SITE 2 BC3 9 ARG A 385 ASP A 386 HOH A2398 HOH A2417
SITE 3 BC3 9 HOH A2420
SITE 1 BC4 9 LYS A 291 GLU B 109 GLU B 111 SER B 141
SITE 2 BC4 9 LYS B 143 ASP B 144 HOH B2587 HOH B2589
SITE 3 BC4 9 HOH B2592
SITE 1 BC5 8 GLU A 109 GLU A 111 LYS A 143 ASP A 144
SITE 2 BC5 8 HOH A2588 HOH A2591 HOH A2593 LYS B 291
CRYST1 126.181 126.181 151.938 90.00 90.00 120.00 P 31 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007925 0.004576 0.000000 0.00000
SCALE2 0.000000 0.009151 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006582 0.00000
MTRIX1 1 -1.000000 0.002592 0.000765 119.50000 1
MTRIX2 1 -0.002636 -0.998000 -0.063830 -1.45800 1
MTRIX3 1 0.000598 -0.063830 0.998000 -0.07888 1