HEADER IMMUNE SYSTEM 22-APR-08 2JJV TITLE STRUCTURE OF HUMAN SIGNAL REGULATORY PROTEIN (SIRP) BETA(2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL-REGULATORY PROTEIN BETA 1.; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL ECTODOMAIN, RESIDUES 30-148; COMPND 5 SYNONYM: SIRP BETA 2; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: 2 ISOFORMS PRODUCED BY ALTERNATIVE SPLICING. IN THIS COMPND 8 ENTRY ISOFORM 1 (O00241-1) IS PRESENT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: LEC3.2.8.1; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: CHO; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEE14 KEYWDS IMMUNE SYSTEM, IMMUNOGLOBULIN SUPERFAMILY, SIGNAL REGULATORY PROTEIN KEYWDS 2 BETA, SIRP, SIRPB2, PAIRED RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR D.HATHERLEY,S.C.GRAHAM,J.TURNER,K.HARLOS,D.I.STUART,A.N.BARCLAY REVDAT 5 16-OCT-24 2JJV 1 REMARK REVDAT 4 13-DEC-23 2JJV 1 REMARK REVDAT 3 03-APR-19 2JJV 1 SOURCE REVDAT 2 24-FEB-09 2JJV 1 VERSN REVDAT 1 05-AUG-08 2JJV 0 JRNL AUTH D.HATHERLEY,S.C.GRAHAM,J.TURNER,K.HARLOS,D.I.STUART, JRNL AUTH 2 A.N.BARCLAY JRNL TITL PAIRED RECEPTOR SPECIFICITY EXPLAINED BY STRUCTURES OF JRNL TITL 2 SIGNAL REGULATORY PROTEINS ALONE AND COMPLEXED WITH CD47. JRNL REF MOL.CELL V. 31 266 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18657508 JRNL DOI 10.1016/J.MOLCEL.2008.05.026 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 18506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1074 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1750 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.741 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1833 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1231 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2511 ; 1.200 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3006 ; 0.752 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 244 ; 6.309 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;29.946 ;23.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 291 ;11.165 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.509 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2053 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 370 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 264 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1259 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 837 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1012 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 116 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1244 ; 1.238 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1912 ; 1.652 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 711 ; 2.604 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 594 ; 3.932 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1960 34.2070 7.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.0582 T22: -0.0063 REMARK 3 T33: 0.0316 T12: -0.0379 REMARK 3 T13: -0.1065 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 3.5032 L22: 2.1864 REMARK 3 L33: 2.1879 L12: 0.3487 REMARK 3 L13: 1.8671 L23: -0.1024 REMARK 3 S TENSOR REMARK 3 S11: 0.1611 S12: -0.0673 S13: -0.2754 REMARK 3 S21: -0.3656 S22: 0.1251 S23: 0.4079 REMARK 3 S31: 0.2111 S32: -0.2244 S33: -0.2862 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1740 35.5310 15.3980 REMARK 3 T TENSOR REMARK 3 T11: -0.0383 T22: 0.1830 REMARK 3 T33: 0.0193 T12: -0.1374 REMARK 3 T13: 0.0308 T23: 0.0758 REMARK 3 L TENSOR REMARK 3 L11: 4.3411 L22: 6.9770 REMARK 3 L33: 7.6564 L12: -1.3069 REMARK 3 L13: 2.0288 L23: 2.5661 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.8886 S13: -0.6988 REMARK 3 S21: 0.2099 S22: 0.0169 S23: 0.5199 REMARK 3 S31: 0.7790 S32: -0.8476 S33: -0.0123 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0240 34.5350 10.8340 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: 0.0572 REMARK 3 T33: 0.0434 T12: -0.0570 REMARK 3 T13: -0.1140 T23: 0.0653 REMARK 3 L TENSOR REMARK 3 L11: 4.1226 L22: 4.4159 REMARK 3 L33: 2.4588 L12: 0.7324 REMARK 3 L13: 0.6109 L23: -0.6724 REMARK 3 S TENSOR REMARK 3 S11: 0.1708 S12: -0.3715 S13: -0.3301 REMARK 3 S21: -0.2404 S22: 0.0967 S23: 0.4303 REMARK 3 S31: 0.2365 S32: -0.2017 S33: -0.2675 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2400 33.7830 7.7070 REMARK 3 T TENSOR REMARK 3 T11: -0.0316 T22: 0.0513 REMARK 3 T33: 0.0247 T12: -0.0178 REMARK 3 T13: -0.1068 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 4.0097 L22: 17.5473 REMARK 3 L33: 5.9553 L12: -1.2940 REMARK 3 L13: 1.3046 L23: -5.2227 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: -0.0099 S13: -0.2626 REMARK 3 S21: -0.5949 S22: 0.2540 S23: 0.2651 REMARK 3 S31: 0.2819 S32: -0.0292 S33: -0.3168 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 35 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2590 49.4360 11.9060 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.0288 REMARK 3 T33: 0.0039 T12: -0.0069 REMARK 3 T13: -0.0061 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.2122 L22: 1.4599 REMARK 3 L33: 2.0475 L12: 0.5412 REMARK 3 L13: -0.8903 L23: -0.8049 REMARK 3 S TENSOR REMARK 3 S11: -0.0620 S12: 0.1292 S13: 0.0784 REMARK 3 S21: -0.1394 S22: 0.0526 S23: 0.0335 REMARK 3 S31: 0.0778 S32: -0.1354 S33: 0.0095 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 36 B 54 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9110 47.5370 15.4530 REMARK 3 T TENSOR REMARK 3 T11: 0.0426 T22: -0.0020 REMARK 3 T33: 0.0286 T12: 0.0289 REMARK 3 T13: 0.0057 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 2.2196 L22: 5.0809 REMARK 3 L33: 3.4242 L12: 1.0999 REMARK 3 L13: 0.1641 L23: 0.7794 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: 0.0020 S13: -0.0699 REMARK 3 S21: -0.0470 S22: -0.0428 S23: -0.4205 REMARK 3 S31: 0.2594 S32: 0.1062 S33: -0.0047 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 55 B 84 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7930 39.7420 14.2760 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.0193 REMARK 3 T33: -0.0096 T12: 0.0050 REMARK 3 T13: 0.0087 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.4869 L22: 1.3305 REMARK 3 L33: 0.8327 L12: -0.2708 REMARK 3 L13: -0.0228 L23: -0.1818 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.0627 S13: -0.0180 REMARK 3 S21: -0.0430 S22: -0.0849 S23: -0.1079 REMARK 3 S31: 0.0368 S32: 0.0284 S33: 0.0648 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 85 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3690 51.7810 14.3460 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.0190 REMARK 3 T33: 0.0546 T12: -0.0024 REMARK 3 T13: -0.0090 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.6198 L22: 2.2337 REMARK 3 L33: 5.4511 L12: 0.3793 REMARK 3 L13: -0.9086 L23: -1.2699 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.0085 S13: 0.0152 REMARK 3 S21: -0.0435 S22: -0.0234 S23: -0.1921 REMARK 3 S31: 0.1044 S32: 0.2489 S33: 0.0334 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. B VALUES INCLUDE TLS CONTRIBUTIONS. REMARK 4 REMARK 4 2JJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-08. REMARK 100 THE DEPOSITION ID IS D_1290036011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19509 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2UV3 CHAIN A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300 NL 25 MG/ML SIRP BETA PLUS 100 NL REMARK 280 RESERVOIR (3.2 M AMMONIUM SULPHATE, 0.1 M MES PH 6.0) REMARK 280 EQUILIBRATED AGAINST 95 UL OF RESERVOIR AT 20.5 C. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.48950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.48950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 53 REMARK 465 GLU A 54 REMARK 465 GLY A 55 REMARK 465 ALA A 116 REMARK 465 LYS A 117 REMARK 465 PRO A 118 REMARK 465 SER A 119 REMARK 465 THR A 120 REMARK 465 ARG A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 GLU B 1 REMARK 465 LYS B 117 REMARK 465 PRO B 118 REMARK 465 SER B 119 REMARK 465 THR B 120 REMARK 465 ARG B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 HIS A 56 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 70 CG OD1 ND2 REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 105 CE NZ REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2005 DISTANCE = 5.82 ANGSTROMS REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B1120 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JJU RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN SIGNAL REGULATORY PROTEIN (SIRP) BETA REMARK 900 RELATED ID: 2JJW RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN SIGNAL REGULATORY PROTEIN (SIRP) GAMMA REMARK 900 RELATED ID: 2UV3 RELATED DB: PDB REMARK 900 STRUCTURE OF THE SIGNAL-REGULATORY PROTEIN ( SIRP) ALPHA DOMAIN REMARK 900 THAT BINDS CD47. REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE NUMBERING IS FOR THE MATURE PROTEIN (LACKING N- REMARK 999 TERMINAL 29 AMINO ACID SIGNAL SEQUENCE). C-TERMINAL REMARK 999 PURIFICATION TAG (TRHHHHHH) IS ADDED. DBREF 2JJV A 1 119 UNP Q5TFQ8 Q5TFQ8_HUMAN 30 148 DBREF 2JJV A 120 127 PDB 2JJV 2JJV 120 127 DBREF 2JJV B 1 119 UNP Q5TFQ8 Q5TFQ8_HUMAN 30 148 DBREF 2JJV B 120 127 PDB 2JJV 2JJV 120 127 SEQRES 1 A 127 GLU GLU GLU LEU GLN VAL ILE GLN PRO ASP LYS SER ILE SEQRES 2 A 127 SER VAL ALA ALA GLY GLU SER ALA THR LEU HIS CYS THR SEQRES 3 A 127 VAL THR SER LEU ILE PRO VAL GLY PRO ILE GLN TRP PHE SEQRES 4 A 127 ARG GLY ALA GLY PRO GLY ARG GLU LEU ILE TYR ASN GLN SEQRES 5 A 127 LYS GLU GLY HIS PHE PRO ARG VAL THR THR VAL SER ASP SEQRES 6 A 127 LEU THR LYS ARG ASN ASN MET ASP PHE SER ILE ARG ILE SEQRES 7 A 127 SER ASN ILE THR PRO ALA ASP ALA GLY THR TYR TYR CYS SEQRES 8 A 127 VAL LYS PHE ARG LYS GLY SER PRO ASP HIS VAL GLU PHE SEQRES 9 A 127 LYS SER GLY ALA GLY THR GLU LEU SER VAL ARG ALA LYS SEQRES 10 A 127 PRO SER THR ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 127 GLU GLU GLU LEU GLN VAL ILE GLN PRO ASP LYS SER ILE SEQRES 2 B 127 SER VAL ALA ALA GLY GLU SER ALA THR LEU HIS CYS THR SEQRES 3 B 127 VAL THR SER LEU ILE PRO VAL GLY PRO ILE GLN TRP PHE SEQRES 4 B 127 ARG GLY ALA GLY PRO GLY ARG GLU LEU ILE TYR ASN GLN SEQRES 5 B 127 LYS GLU GLY HIS PHE PRO ARG VAL THR THR VAL SER ASP SEQRES 6 B 127 LEU THR LYS ARG ASN ASN MET ASP PHE SER ILE ARG ILE SEQRES 7 B 127 SER ASN ILE THR PRO ALA ASP ALA GLY THR TYR TYR CYS SEQRES 8 B 127 VAL LYS PHE ARG LYS GLY SER PRO ASP HIS VAL GLU PHE SEQRES 9 B 127 LYS SER GLY ALA GLY THR GLU LEU SER VAL ARG ALA LYS SEQRES 10 B 127 PRO SER THR ARG HIS HIS HIS HIS HIS HIS HET SO4 A1116 5 HET SO4 B1117 5 HET SO4 B1118 5 HET SO4 B1119 5 HET CL B1120 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 CL CL 1- FORMUL 8 HOH *139(H2 O) HELIX 1 1 PRO A 83 ASP A 85 5 3 HELIX 2 2 PRO B 83 ASP B 85 5 3 SHEET 1 AA 2 VAL A 6 ILE A 7 0 SHEET 2 AA 2 THR A 26 VAL A 27 -1 O THR A 26 N ILE A 7 SHEET 1 AB 5 SER A 12 ALA A 16 0 SHEET 2 AB 5 THR A 110 ARG A 115 1 O GLU A 111 N ILE A 13 SHEET 3 AB 5 GLY A 87 ARG A 95 -1 O GLY A 87 N LEU A 112 SHEET 4 AB 5 ILE A 36 ARG A 40 -1 O GLN A 37 N VAL A 92 SHEET 5 AB 5 GLU A 47 ASN A 51 -1 O GLU A 47 N ARG A 40 SHEET 1 AC 4 SER A 12 ALA A 16 0 SHEET 2 AC 4 THR A 110 ARG A 115 1 O GLU A 111 N ILE A 13 SHEET 3 AC 4 GLY A 87 ARG A 95 -1 O GLY A 87 N LEU A 112 SHEET 4 AC 4 VAL A 102 SER A 106 -1 O VAL A 102 N ARG A 95 SHEET 1 AD 3 ALA A 21 LEU A 23 0 SHEET 2 AD 3 ILE A 76 ILE A 78 -1 O ILE A 76 N LEU A 23 SHEET 3 AD 3 VAL A 60 THR A 62 -1 O THR A 61 N ARG A 77 SHEET 1 BA 2 VAL B 6 ILE B 7 0 SHEET 2 BA 2 THR B 26 VAL B 27 -1 O THR B 26 N ILE B 7 SHEET 1 BB 5 SER B 12 VAL B 15 0 SHEET 2 BB 5 THR B 110 VAL B 114 1 O GLU B 111 N ILE B 13 SHEET 3 BB 5 GLY B 87 ARG B 95 -1 O GLY B 87 N LEU B 112 SHEET 4 BB 5 ILE B 36 ARG B 40 -1 O GLN B 37 N VAL B 92 SHEET 5 BB 5 GLU B 47 ASN B 51 -1 O GLU B 47 N ARG B 40 SHEET 1 BC 4 SER B 12 VAL B 15 0 SHEET 2 BC 4 THR B 110 VAL B 114 1 O GLU B 111 N ILE B 13 SHEET 3 BC 4 GLY B 87 ARG B 95 -1 O GLY B 87 N LEU B 112 SHEET 4 BC 4 VAL B 102 SER B 106 -1 O VAL B 102 N ARG B 95 SHEET 1 BD 3 ALA B 21 LEU B 23 0 SHEET 2 BD 3 ILE B 76 ILE B 78 -1 O ILE B 76 N LEU B 23 SHEET 3 BD 3 VAL B 60 THR B 62 -1 O THR B 61 N ARG B 77 SSBOND 1 CYS A 25 CYS A 91 1555 1555 2.04 SSBOND 2 CYS B 25 CYS B 91 1555 1555 2.03 CISPEP 1 ILE A 31 PRO A 32 0 0.91 CISPEP 2 SER A 98 PRO A 99 0 -4.73 CISPEP 3 ILE B 31 PRO B 32 0 0.05 CISPEP 4 SER B 98 PRO B 99 0 7.50 SITE 1 AC1 6 LYS B 68 ARG B 69 ASN B 70 ASN B 71 SITE 2 AC1 6 HOH B2094 HOH B2096 SITE 1 AC2 6 PRO B 9 ASP B 10 LYS B 11 SER B 12 SITE 2 AC2 6 HOH B2009 HOH B2097 SITE 1 AC3 4 GLU A 47 LEU A 48 PRO B 44 ARG B 77 SITE 1 AC4 4 VAL B 102 GLU B 103 HOH B2079 HOH B2081 SITE 1 AC5 4 ALA A 42 TYR A 90 SER B 64 ASP B 65 CRYST1 114.979 47.490 40.044 90.00 93.39 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008697 0.000000 0.000515 0.00000 SCALE2 0.000000 0.021057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025016 0.00000