data_2JK1 # _entry.id 2JK1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JK1 PDBE EBI-36389 WWPDB D_1290036389 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2VUI unspecified 'CRYSTAL STRUCTURE OF THE HUPR RECEIVER DOMAIN IN INHIBITORY PHOSPHO-STATE' PDB 2VUH unspecified 'CRYSTAL STRUCTURE OF THE D55E MUTANT OF THE HUPR RECEIVER DOMAIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2JK1 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-05-26 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Davies, K.M.' 1 'Lowe, E.D.' 2 'Venien-Bryan, C.' 3 'Johnson, L.N.' 4 # _citation.id primary _citation.title 'The Hupr Receiver Domain Crystal Structure in its Nonphospho and Inhibitory Phospho States.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 385 _citation.page_first 51 _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18977359 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2008.10.027 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Davies, K.M.' 1 primary 'Lowe, E.D.' 2 primary 'Venien-Bryan, C.' 3 primary 'Johnson, L.N.' 4 # _cell.entry_id 2JK1 _cell.length_a 89.931 _cell.length_b 89.931 _cell.length_c 53.874 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JK1 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HYDROGENASE TRANSCRIPTIONAL REGULATORY PROTEIN HUPR1' 15658.879 1 ? ? 'RECEIVER DOMAIN, RESIDUES 5-140' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 58 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name HUPR # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;APAILLVDDEPHSLAAMKLALEDDFDVLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITG YTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFTLARENERLSLEMRLLERP ; _entity_poly.pdbx_seq_one_letter_code_can ;APAILLVDDEPHSLAAMKLALEDDFDVLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITG YTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFTLARENERLSLEMRLLERP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 ALA n 1 4 ILE n 1 5 LEU n 1 6 LEU n 1 7 VAL n 1 8 ASP n 1 9 ASP n 1 10 GLU n 1 11 PRO n 1 12 HIS n 1 13 SER n 1 14 LEU n 1 15 ALA n 1 16 ALA n 1 17 MET n 1 18 LYS n 1 19 LEU n 1 20 ALA n 1 21 LEU n 1 22 GLU n 1 23 ASP n 1 24 ASP n 1 25 PHE n 1 26 ASP n 1 27 VAL n 1 28 LEU n 1 29 THR n 1 30 ALA n 1 31 GLN n 1 32 GLY n 1 33 ALA n 1 34 GLU n 1 35 ALA n 1 36 ALA n 1 37 ILE n 1 38 ALA n 1 39 ILE n 1 40 LEU n 1 41 GLU n 1 42 GLU n 1 43 GLU n 1 44 TRP n 1 45 VAL n 1 46 GLN n 1 47 VAL n 1 48 ILE n 1 49 ILE n 1 50 CYS n 1 51 ASP n 1 52 GLN n 1 53 ARG n 1 54 MET n 1 55 PRO n 1 56 GLY n 1 57 ARG n 1 58 THR n 1 59 GLY n 1 60 VAL n 1 61 ASP n 1 62 PHE n 1 63 LEU n 1 64 THR n 1 65 GLU n 1 66 VAL n 1 67 ARG n 1 68 GLU n 1 69 ARG n 1 70 TRP n 1 71 PRO n 1 72 GLU n 1 73 THR n 1 74 VAL n 1 75 ARG n 1 76 ILE n 1 77 ILE n 1 78 ILE n 1 79 THR n 1 80 GLY n 1 81 TYR n 1 82 THR n 1 83 ASP n 1 84 SER n 1 85 ALA n 1 86 SER n 1 87 MET n 1 88 MET n 1 89 ALA n 1 90 ALA n 1 91 ILE n 1 92 ASN n 1 93 ASP n 1 94 ALA n 1 95 GLY n 1 96 ILE n 1 97 HIS n 1 98 GLN n 1 99 PHE n 1 100 LEU n 1 101 THR n 1 102 LYS n 1 103 PRO n 1 104 TRP n 1 105 HIS n 1 106 PRO n 1 107 GLU n 1 108 GLN n 1 109 LEU n 1 110 LEU n 1 111 SER n 1 112 SER n 1 113 ALA n 1 114 ARG n 1 115 ASN n 1 116 ALA n 1 117 ALA n 1 118 ARG n 1 119 MET n 1 120 PHE n 1 121 THR n 1 122 LEU n 1 123 ALA n 1 124 ARG n 1 125 GLU n 1 126 ASN n 1 127 GLU n 1 128 ARG n 1 129 LEU n 1 130 SER n 1 131 LEU n 1 132 GLU n 1 133 MET n 1 134 ARG n 1 135 LEU n 1 136 LEU n 1 137 GLU n 1 138 ARG n 1 139 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RHODOBACTER CAPSULATUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1061 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP HUPR_RHOCA 1 ? ? P26408 ? 2 PDB 2JK1 1 ? ? 2JK1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2JK1 A 1 ? 136 ? P26408 5 ? 140 ? 5 140 2 2 2JK1 A 137 ? 139 ? 2JK1 141 ? 143 ? 141 143 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2JK1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.53 _exptl_crystal.density_percent_sol 65.21 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2.4 M NACL, 0.2 M MGCL2, 0.1 M TRIS-HCL PH 8.0, 28% ETHYLENE GLYCOL, AND 0.1% MONO-THIO-GLYCEROL' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DUAL CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength 0.933 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2JK1 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.22 _reflns.d_resolution_high 2.10 _reflns.number_obs 12722 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.50 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.20 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.38 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.10 _reflns_shell.pdbx_redundancy 7.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2JK1 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 12722 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.23 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.99 _refine.ls_R_factor_obs 0.22473 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22379 _refine.ls_R_factor_R_free 0.24347 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 671 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 46.488 _refine.aniso_B[1][1] 0.04 _refine.aniso_B[2][2] 0.04 _refine.aniso_B[3][3] -0.09 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.185 _refine.pdbx_overall_ESU_R_Free 0.159 _refine.overall_SU_ML 0.115 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 8.495 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1091 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 58 _refine_hist.number_atoms_total 1150 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 40.23 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.021 ? 1162 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.441 1.959 ? 1585 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.122 5.000 ? 147 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.525 24.138 ? 58 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.919 15.000 ? 202 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.281 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.102 0.200 ? 179 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 897 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.200 0.200 ? 525 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.289 0.200 ? 803 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.191 0.200 ? 46 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.294 0.200 ? 33 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.097 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.943 1.500 ? 750 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.391 2.000 ? 1169 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.194 3.000 ? 470 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.167 4.500 ? 416 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.155 _refine_ls_shell.number_reflns_R_work 914 _refine_ls_shell.R_factor_R_work 0.308 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.392 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2JK1 _struct.title 'Crystal structure of the wild-type HupR receiver domain' _struct.pdbx_descriptor 'HYDROGENASE TRANSCRIPTIONAL REGULATORY PROTEIN HUPR1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JK1 _struct_keywords.pdbx_keywords DNA-BINDING _struct_keywords.text ;NUCLEOTIDE-BINDING, TRANSCRIPTION REGULATION, BERYLLIUM FLUORIDE PHOSPHORYLATION MIMIC, HUPR, ACTIVATOR, ATP-BINDING, DNA-BINDING, TWO-COMPONENT REGULATORY SYSTEM, TRANSCRIPTION, PHOSPHOPROTEIN, RESPONSE REGULATOR ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 10 ? GLU A 22 ? GLU A 14 GLU A 26 1 ? 13 HELX_P HELX_P2 2 GLY A 32 ? GLU A 43 ? GLY A 36 GLU A 47 1 ? 12 HELX_P HELX_P3 3 THR A 58 ? TRP A 70 ? THR A 62 TRP A 74 1 ? 13 HELX_P HELX_P4 4 SER A 84 ? ALA A 94 ? SER A 88 ALA A 98 1 ? 11 HELX_P HELX_P5 5 HIS A 105 ? GLU A 137 ? HIS A 109 GLU A 141 1 ? 33 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B MG . MG ? ? ? 1_555 A ASP 9 OD1 ? ? A MG 1144 A ASP 13 1_555 ? ? ? ? ? ? ? 2.015 ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 A ASP 51 OD2 ? ? A MG 1144 A ASP 55 1_555 ? ? ? ? ? ? ? 2.099 ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 A ARG 53 O ? ? A MG 1144 A ARG 57 1_555 ? ? ? ? ? ? ? 2.128 ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 C HOH . O ? ? A MG 1144 A HOH 2002 1_555 ? ? ? ? ? ? ? 2.178 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 102 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 106 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 103 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 107 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -6.15 # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 27 ? ALA A 30 ? VAL A 31 ALA A 34 AA 2 ALA A 3 ? VAL A 7 ? ALA A 7 VAL A 11 AA 3 VAL A 45 ? ASP A 51 ? VAL A 49 ASP A 55 AA 4 VAL A 74 ? THR A 79 ? VAL A 78 THR A 83 AA 5 GLN A 98 ? THR A 101 ? GLN A 102 THR A 105 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 28 ? N LEU A 32 O ILE A 4 ? O ILE A 8 AA 2 3 O ALA A 3 ? O ALA A 7 N GLN A 46 ? N GLN A 50 AA 3 4 N ILE A 48 ? N ILE A 52 O VAL A 74 ? O VAL A 78 AA 4 5 N ILE A 77 ? N ILE A 81 O GLN A 98 ? O GLN A 102 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE MG A1144' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP A 9 ? ASP A 13 . ? 1_555 ? 2 AC1 4 ASP A 51 ? ASP A 55 . ? 1_555 ? 3 AC1 4 ARG A 53 ? ARG A 57 . ? 1_555 ? 4 AC1 4 HOH C . ? HOH A 2002 . ? 1_555 ? # _database_PDB_matrix.entry_id 2JK1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2JK1 _atom_sites.fract_transf_matrix[1][1] 0.011120 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011120 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018562 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 5 ? ? ? A . n A 1 2 PRO 2 6 6 PRO PRO A . n A 1 3 ALA 3 7 7 ALA ALA A . n A 1 4 ILE 4 8 8 ILE ILE A . n A 1 5 LEU 5 9 9 LEU LEU A . n A 1 6 LEU 6 10 10 LEU LEU A . n A 1 7 VAL 7 11 11 VAL VAL A . n A 1 8 ASP 8 12 12 ASP ASP A . n A 1 9 ASP 9 13 13 ASP ASP A . n A 1 10 GLU 10 14 14 GLU GLU A . n A 1 11 PRO 11 15 15 PRO PRO A . n A 1 12 HIS 12 16 16 HIS HIS A . n A 1 13 SER 13 17 17 SER SER A . n A 1 14 LEU 14 18 18 LEU LEU A . n A 1 15 ALA 15 19 19 ALA ALA A . n A 1 16 ALA 16 20 20 ALA ALA A . n A 1 17 MET 17 21 21 MET MET A . n A 1 18 LYS 18 22 22 LYS LYS A . n A 1 19 LEU 19 23 23 LEU LEU A . n A 1 20 ALA 20 24 24 ALA ALA A . n A 1 21 LEU 21 25 25 LEU LEU A . n A 1 22 GLU 22 26 26 GLU GLU A . n A 1 23 ASP 23 27 27 ASP ASP A . n A 1 24 ASP 24 28 28 ASP ASP A . n A 1 25 PHE 25 29 29 PHE PHE A . n A 1 26 ASP 26 30 30 ASP ASP A . n A 1 27 VAL 27 31 31 VAL VAL A . n A 1 28 LEU 28 32 32 LEU LEU A . n A 1 29 THR 29 33 33 THR THR A . n A 1 30 ALA 30 34 34 ALA ALA A . n A 1 31 GLN 31 35 35 GLN GLN A . n A 1 32 GLY 32 36 36 GLY GLY A . n A 1 33 ALA 33 37 37 ALA ALA A . n A 1 34 GLU 34 38 38 GLU GLU A . n A 1 35 ALA 35 39 39 ALA ALA A . n A 1 36 ALA 36 40 40 ALA ALA A . n A 1 37 ILE 37 41 41 ILE ILE A . n A 1 38 ALA 38 42 42 ALA ALA A . n A 1 39 ILE 39 43 43 ILE ILE A . n A 1 40 LEU 40 44 44 LEU LEU A . n A 1 41 GLU 41 45 45 GLU GLU A . n A 1 42 GLU 42 46 46 GLU GLU A . n A 1 43 GLU 43 47 47 GLU GLU A . n A 1 44 TRP 44 48 48 TRP TRP A . n A 1 45 VAL 45 49 49 VAL VAL A . n A 1 46 GLN 46 50 50 GLN GLN A . n A 1 47 VAL 47 51 51 VAL VAL A . n A 1 48 ILE 48 52 52 ILE ILE A . n A 1 49 ILE 49 53 53 ILE ILE A . n A 1 50 CYS 50 54 54 CYS CYS A . n A 1 51 ASP 51 55 55 ASP ASP A . n A 1 52 GLN 52 56 56 GLN GLN A . n A 1 53 ARG 53 57 57 ARG ARG A . n A 1 54 MET 54 58 58 MET MET A . n A 1 55 PRO 55 59 59 PRO PRO A . n A 1 56 GLY 56 60 60 GLY GLY A . n A 1 57 ARG 57 61 61 ARG ARG A . n A 1 58 THR 58 62 62 THR THR A . n A 1 59 GLY 59 63 63 GLY GLY A . n A 1 60 VAL 60 64 64 VAL VAL A . n A 1 61 ASP 61 65 65 ASP ASP A . n A 1 62 PHE 62 66 66 PHE PHE A . n A 1 63 LEU 63 67 67 LEU LEU A . n A 1 64 THR 64 68 68 THR THR A . n A 1 65 GLU 65 69 69 GLU GLU A . n A 1 66 VAL 66 70 70 VAL VAL A . n A 1 67 ARG 67 71 71 ARG ARG A . n A 1 68 GLU 68 72 72 GLU GLU A . n A 1 69 ARG 69 73 73 ARG ARG A . n A 1 70 TRP 70 74 74 TRP TRP A . n A 1 71 PRO 71 75 75 PRO PRO A . n A 1 72 GLU 72 76 76 GLU GLU A . n A 1 73 THR 73 77 77 THR THR A . n A 1 74 VAL 74 78 78 VAL VAL A . n A 1 75 ARG 75 79 79 ARG ARG A . n A 1 76 ILE 76 80 80 ILE ILE A . n A 1 77 ILE 77 81 81 ILE ILE A . n A 1 78 ILE 78 82 82 ILE ILE A . n A 1 79 THR 79 83 83 THR THR A . n A 1 80 GLY 80 84 84 GLY GLY A . n A 1 81 TYR 81 85 85 TYR TYR A . n A 1 82 THR 82 86 86 THR THR A . n A 1 83 ASP 83 87 87 ASP ASP A . n A 1 84 SER 84 88 88 SER SER A . n A 1 85 ALA 85 89 89 ALA ALA A . n A 1 86 SER 86 90 90 SER SER A . n A 1 87 MET 87 91 91 MET MET A . n A 1 88 MET 88 92 92 MET MET A . n A 1 89 ALA 89 93 93 ALA ALA A . n A 1 90 ALA 90 94 94 ALA ALA A . n A 1 91 ILE 91 95 95 ILE ILE A . n A 1 92 ASN 92 96 96 ASN ASN A . n A 1 93 ASP 93 97 97 ASP ASP A . n A 1 94 ALA 94 98 98 ALA ALA A . n A 1 95 GLY 95 99 99 GLY GLY A . n A 1 96 ILE 96 100 100 ILE ILE A . n A 1 97 HIS 97 101 101 HIS HIS A . n A 1 98 GLN 98 102 102 GLN GLN A . n A 1 99 PHE 99 103 103 PHE PHE A . n A 1 100 LEU 100 104 104 LEU LEU A . n A 1 101 THR 101 105 105 THR THR A . n A 1 102 LYS 102 106 106 LYS LYS A . n A 1 103 PRO 103 107 107 PRO PRO A . n A 1 104 TRP 104 108 108 TRP TRP A . n A 1 105 HIS 105 109 109 HIS HIS A . n A 1 106 PRO 106 110 110 PRO PRO A . n A 1 107 GLU 107 111 111 GLU GLU A . n A 1 108 GLN 108 112 112 GLN GLN A . n A 1 109 LEU 109 113 113 LEU LEU A . n A 1 110 LEU 110 114 114 LEU LEU A . n A 1 111 SER 111 115 115 SER SER A . n A 1 112 SER 112 116 116 SER SER A . n A 1 113 ALA 113 117 117 ALA ALA A . n A 1 114 ARG 114 118 118 ARG ARG A . n A 1 115 ASN 115 119 119 ASN ASN A . n A 1 116 ALA 116 120 120 ALA ALA A . n A 1 117 ALA 117 121 121 ALA ALA A . n A 1 118 ARG 118 122 122 ARG ARG A . n A 1 119 MET 119 123 123 MET MET A . n A 1 120 PHE 120 124 124 PHE PHE A . n A 1 121 THR 121 125 125 THR THR A . n A 1 122 LEU 122 126 126 LEU LEU A . n A 1 123 ALA 123 127 127 ALA ALA A . n A 1 124 ARG 124 128 128 ARG ARG A . n A 1 125 GLU 125 129 129 GLU GLU A . n A 1 126 ASN 126 130 130 ASN ASN A . n A 1 127 GLU 127 131 131 GLU GLU A . n A 1 128 ARG 128 132 132 ARG ARG A . n A 1 129 LEU 129 133 133 LEU LEU A . n A 1 130 SER 130 134 134 SER SER A . n A 1 131 LEU 131 135 135 LEU LEU A . n A 1 132 GLU 132 136 136 GLU GLU A . n A 1 133 MET 133 137 137 MET MET A . n A 1 134 ARG 134 138 138 ARG ARG A . n A 1 135 LEU 135 139 139 LEU LEU A . n A 1 136 LEU 136 140 140 LEU LEU A . n A 1 137 GLU 137 141 141 GLU GLU A . n A 1 138 ARG 138 142 142 ARG ARG A . n A 1 139 PRO 139 143 143 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 1144 1144 MG MG A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2710 ? 1 MORE -17.4 ? 1 'SSA (A^2)' 16320 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.9370000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2042 ? C HOH . 2 1 A HOH 2043 ? C HOH . 3 1 A HOH 2055 ? C HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 9 ? A ASP 13 ? 1_555 MG ? B MG . ? A MG 1144 ? 1_555 OD2 ? A ASP 51 ? A ASP 55 ? 1_555 100.2 ? 2 OD1 ? A ASP 9 ? A ASP 13 ? 1_555 MG ? B MG . ? A MG 1144 ? 1_555 O ? A ARG 53 ? A ARG 57 ? 1_555 93.7 ? 3 OD2 ? A ASP 51 ? A ASP 55 ? 1_555 MG ? B MG . ? A MG 1144 ? 1_555 O ? A ARG 53 ? A ARG 57 ? 1_555 80.9 ? 4 OD1 ? A ASP 9 ? A ASP 13 ? 1_555 MG ? B MG . ? A MG 1144 ? 1_555 O ? C HOH . ? A HOH 2002 ? 1_555 94.1 ? 5 OD2 ? A ASP 51 ? A ASP 55 ? 1_555 MG ? B MG . ? A MG 1144 ? 1_555 O ? C HOH . ? A HOH 2002 ? 1_555 83.1 ? 6 O ? A ARG 53 ? A ARG 57 ? 1_555 MG ? B MG . ? A MG 1144 ? 1_555 O ? C HOH . ? A HOH 2002 ? 1_555 163.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-11 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 35.8916 -31.7711 9.1165 0.0858 -0.1173 -0.1403 0.0869 0.1211 0.0471 16.5278 8.6056 2.6072 -8.2728 -3.7007 4.6704 -0.6803 -0.1195 -0.6017 0.4291 0.2450 0.6313 0.6131 -0.0031 0.4352 'X-RAY DIFFRACTION' 2 ? refined 22.2784 -1.0986 6.7048 -0.0949 -0.0559 -0.0599 0.0061 0.0967 0.0384 1.6135 2.8046 2.7335 0.8009 -0.4789 -0.4599 0.0853 0.0829 0.1489 -0.3112 -0.1174 -0.3891 -0.0852 0.3688 0.0321 'X-RAY DIFFRACTION' 3 ? refined 7.8566 -4.4203 4.0437 0.0076 -0.1306 -0.1270 0.0001 -0.0195 0.0180 3.3523 0.7652 2.9835 0.8278 1.0857 -0.9467 -0.2108 0.0543 0.1169 -0.2238 0.1118 0.1444 0.2378 0.0234 0.0990 'X-RAY DIFFRACTION' 4 ? refined 19.6682 -12.2684 15.5303 -0.1182 -0.0353 -0.0585 0.0053 -0.0134 0.0298 6.6575 10.9658 1.1172 -7.9249 -2.7042 3.3888 0.0056 -0.0046 0.0976 0.1589 -0.0575 -0.2037 0.0456 0.0024 0.0519 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 132 ? ? A 143 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 6 ? ? A 83 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 84 ? ? A 108 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 109 ? ? A 131 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SHARP phasing . ? 4 # _pdbx_entry_details.entry_id 2JK1 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE ENCODES THE RECEIVER DOMAIN OF THE HUPR RESPONSE REGULATOR ; # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 142 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 93.47 _pdbx_validate_torsion.psi -41.44 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ALA _pdbx_unobs_or_zero_occ_residues.auth_seq_id 5 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ALA _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH #