HEADER DNA-BINDING 26-MAY-08 2JK1 TITLE CRYSTAL STRUCTURE OF THE WILD-TYPE HUPR RECEIVER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROGENASE TRANSCRIPTIONAL REGULATORY PROTEIN HUPR1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RECEIVER DOMAIN, RESIDUES 5-140; COMPND 5 SYNONYM: HUPR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 1061; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS NUCLEOTIDE-BINDING, TRANSCRIPTION REGULATION, BERYLLIUM FLUORIDE KEYWDS 2 PHOSPHORYLATION MIMIC, HUPR, ACTIVATOR, ATP-BINDING, DNA-BINDING, KEYWDS 3 TWO-COMPONENT REGULATORY SYSTEM, TRANSCRIPTION, PHOSPHOPROTEIN, KEYWDS 4 RESPONSE REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR K.M.DAVIES,E.D.LOWE,C.VENIEN-BRYAN,L.N.JOHNSON REVDAT 4 08-MAY-24 2JK1 1 LINK REVDAT 3 13-JUL-11 2JK1 1 VERSN REVDAT 2 13-JAN-09 2JK1 1 VERSN JRNL REMARK REVDAT 1 11-NOV-08 2JK1 0 JRNL AUTH K.M.DAVIES,E.D.LOWE,C.VENIEN-BRYAN,L.N.JOHNSON JRNL TITL THE HUPR RECEIVER DOMAIN CRYSTAL STRUCTURE IN ITS NONPHOSPHO JRNL TITL 2 AND INHIBITORY PHOSPHO STATES. JRNL REF J.MOL.BIOL. V. 385 51 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 18977359 JRNL DOI 10.1016/J.JMB.2008.10.027 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 671 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1091 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.185 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.495 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1162 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1585 ; 1.441 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 147 ; 6.122 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;34.525 ;24.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 202 ;15.919 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.281 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 179 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 897 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 525 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 803 ; 0.289 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 46 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.294 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.097 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 750 ; 0.943 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1169 ; 1.391 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 470 ; 2.194 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 416 ; 3.167 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 132 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8916 -31.7711 9.1165 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: -0.1173 REMARK 3 T33: -0.1403 T12: 0.0869 REMARK 3 T13: 0.1211 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 16.5278 L22: 8.6056 REMARK 3 L33: 2.6072 L12: -8.2728 REMARK 3 L13: -3.7007 L23: 4.6704 REMARK 3 S TENSOR REMARK 3 S11: -0.6803 S12: -0.1195 S13: -0.6017 REMARK 3 S21: 0.4291 S22: 0.2450 S23: 0.6313 REMARK 3 S31: 0.6131 S32: -0.0031 S33: 0.4352 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2784 -1.0986 6.7048 REMARK 3 T TENSOR REMARK 3 T11: -0.0949 T22: -0.0559 REMARK 3 T33: -0.0599 T12: 0.0061 REMARK 3 T13: 0.0967 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 1.6135 L22: 2.8046 REMARK 3 L33: 2.7335 L12: 0.8009 REMARK 3 L13: -0.4789 L23: -0.4599 REMARK 3 S TENSOR REMARK 3 S11: 0.0853 S12: 0.0829 S13: 0.1489 REMARK 3 S21: -0.3112 S22: -0.1174 S23: -0.3891 REMARK 3 S31: -0.0852 S32: 0.3688 S33: 0.0321 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8566 -4.4203 4.0437 REMARK 3 T TENSOR REMARK 3 T11: 0.0076 T22: -0.1306 REMARK 3 T33: -0.1270 T12: 0.0001 REMARK 3 T13: -0.0195 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 3.3523 L22: 0.7652 REMARK 3 L33: 2.9835 L12: 0.8278 REMARK 3 L13: 1.0857 L23: -0.9467 REMARK 3 S TENSOR REMARK 3 S11: -0.2108 S12: 0.0543 S13: 0.1169 REMARK 3 S21: -0.2238 S22: 0.1118 S23: 0.1444 REMARK 3 S31: 0.2378 S32: 0.0234 S33: 0.0990 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6682 -12.2684 15.5303 REMARK 3 T TENSOR REMARK 3 T11: -0.1182 T22: -0.0353 REMARK 3 T33: -0.0585 T12: 0.0053 REMARK 3 T13: -0.0134 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 6.6575 L22: 10.9658 REMARK 3 L33: 1.1172 L12: -7.9249 REMARK 3 L13: -2.7042 L23: 3.3888 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.0046 S13: 0.0976 REMARK 3 S21: 0.1589 S22: -0.0575 S23: -0.2037 REMARK 3 S31: 0.0456 S32: 0.0024 S33: 0.0519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1290036389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DUAL CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12722 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M NACL, 0.2 M MGCL2, 0.1 M TRIS REMARK 280 -HCL PH 8.0, 28% ETHYLENE GLYCOL, AND 0.1% MONO-THIO-GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.93700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.96550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.96550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.40550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.96550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.96550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.46850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.96550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.96550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.40550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.96550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.96550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 13.46850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.93700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.93700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2042 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2043 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2055 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 142 -41.44 93.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1144 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD1 REMARK 620 2 ASP A 55 OD2 100.2 REMARK 620 3 ARG A 57 O 93.7 80.9 REMARK 620 4 HOH A2002 O 94.1 83.1 163.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1144 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VUI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUPR RECEIVER DOMAIN IN INHIBITORY PHOSPHO- REMARK 900 STATE REMARK 900 RELATED ID: 2VUH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE D55E MUTANT OF THE HUPR RECEIVER DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE ENCODES THE RECEIVER DOMAIN OF THE HUPR RESPONSE REMARK 999 REGULATOR DBREF 2JK1 A 5 140 UNP P26408 HUPR_RHOCA 5 140 DBREF 2JK1 A 141 143 PDB 2JK1 2JK1 141 143 SEQRES 1 A 139 ALA PRO ALA ILE LEU LEU VAL ASP ASP GLU PRO HIS SER SEQRES 2 A 139 LEU ALA ALA MET LYS LEU ALA LEU GLU ASP ASP PHE ASP SEQRES 3 A 139 VAL LEU THR ALA GLN GLY ALA GLU ALA ALA ILE ALA ILE SEQRES 4 A 139 LEU GLU GLU GLU TRP VAL GLN VAL ILE ILE CYS ASP GLN SEQRES 5 A 139 ARG MET PRO GLY ARG THR GLY VAL ASP PHE LEU THR GLU SEQRES 6 A 139 VAL ARG GLU ARG TRP PRO GLU THR VAL ARG ILE ILE ILE SEQRES 7 A 139 THR GLY TYR THR ASP SER ALA SER MET MET ALA ALA ILE SEQRES 8 A 139 ASN ASP ALA GLY ILE HIS GLN PHE LEU THR LYS PRO TRP SEQRES 9 A 139 HIS PRO GLU GLN LEU LEU SER SER ALA ARG ASN ALA ALA SEQRES 10 A 139 ARG MET PHE THR LEU ALA ARG GLU ASN GLU ARG LEU SER SEQRES 11 A 139 LEU GLU MET ARG LEU LEU GLU ARG PRO HET MG A1144 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *58(H2 O) HELIX 1 1 GLU A 14 GLU A 26 1 13 HELIX 2 2 GLY A 36 GLU A 47 1 12 HELIX 3 3 THR A 62 TRP A 74 1 13 HELIX 4 4 SER A 88 ALA A 98 1 11 HELIX 5 5 HIS A 109 GLU A 141 1 33 SHEET 1 AA 5 VAL A 31 ALA A 34 0 SHEET 2 AA 5 ALA A 7 VAL A 11 1 O ILE A 8 N LEU A 32 SHEET 3 AA 5 VAL A 49 ASP A 55 1 N GLN A 50 O ALA A 7 SHEET 4 AA 5 VAL A 78 THR A 83 1 O VAL A 78 N ILE A 52 SHEET 5 AA 5 GLN A 102 THR A 105 1 O GLN A 102 N ILE A 81 LINK OD1 ASP A 13 MG MG A1144 1555 1555 2.02 LINK OD2 ASP A 55 MG MG A1144 1555 1555 2.10 LINK O ARG A 57 MG MG A1144 1555 1555 2.13 LINK MG MG A1144 O HOH A2002 1555 1555 2.18 CISPEP 1 LYS A 106 PRO A 107 0 -6.15 SITE 1 AC1 4 ASP A 13 ASP A 55 ARG A 57 HOH A2002 CRYST1 89.931 89.931 53.874 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011120 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018562 0.00000