HEADER TRANSCRIPTION 11-AUG-08 2JK3 TITLE CRYSTAL STRUCTURE OF THE HLYIIR MUTANT PROTEIN WITH RESIDUES 169-186 TITLE 2 SUBSTITUTED BY GSSGSSG LINKER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOLYSIN II REGULATORY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 4-168,187-201; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SEGMENT 169-186 SUBSTITUTED BY GSSGSSG LINKER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 STRAIN: B771; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS DNA-BINDING PROTEIN, TRANSCRIPTION REGULATION, DNA-BINDING, TETR KEYWDS 2 FAMILY, TRANSCRIPTION, TRANSCRIPTIONAL REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR O.V.KOVALEVSKIY,A.S.SOLONIN,A.A.ANTSON REVDAT 6 13-DEC-23 2JK3 1 REMARK REVDAT 5 12-OCT-11 2JK3 1 COMPND JRNL REMARK REVDAT 4 13-JUL-11 2JK3 1 VERSN REVDAT 3 23-MAR-10 2JK3 1 VERSN REVDAT 2 24-FEB-09 2JK3 1 VERSN REVDAT 1 19-AUG-08 2JK3 0 JRNL AUTH O.V.KOVALEVSKIY,A.S.SOLONIN,A.A.ANTSON JRNL TITL STRUCTURAL INVESTIGATION OF TRANSCRIPTIONAL REGULATOR JRNL TITL 2 HLYIIR: INFLUENCE OF A DISORDERED REGION ON PROTEIN FOLD AND JRNL TITL 3 DIMERIZATION. JRNL REF PROTEINS V. 78 1870 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20225260 JRNL DOI 10.1002/PROT.22700 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0077 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 21749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 946 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2913 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.83000 REMARK 3 B22 (A**2) : -2.45000 REMARK 3 B33 (A**2) : -2.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.258 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.753 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3045 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4089 ; 1.504 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 5.339 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;38.665 ;24.795 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 575 ;16.266 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.549 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2258 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1800 ; 1.657 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2908 ; 2.779 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1245 ; 5.838 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1181 ; 8.167 ;12.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 43.5916 -19.0935 56.3980 REMARK 3 T TENSOR REMARK 3 T11: 0.4974 T22: 0.3096 REMARK 3 T33: 0.5632 T12: 0.0968 REMARK 3 T13: 0.2326 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 5.2546 L22: 6.9879 REMARK 3 L33: 3.4599 L12: -2.3031 REMARK 3 L13: -1.4855 L23: 0.0723 REMARK 3 S TENSOR REMARK 3 S11: 0.1220 S12: 0.2482 S13: -0.4589 REMARK 3 S21: -0.6449 S22: -0.4473 S23: -0.4043 REMARK 3 S31: 0.3046 S32: 0.2694 S33: 0.3253 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1141 0.4564 69.8983 REMARK 3 T TENSOR REMARK 3 T11: 0.0080 T22: 0.1868 REMARK 3 T33: 0.2464 T12: -0.0212 REMARK 3 T13: -0.0266 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.9783 L22: 5.1326 REMARK 3 L33: 3.7614 L12: 0.1535 REMARK 3 L13: -0.5169 L23: 0.2649 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: -0.1066 S13: -0.2479 REMARK 3 S21: -0.2259 S22: -0.1425 S23: -0.2537 REMARK 3 S31: 0.1665 S32: 0.0561 S33: 0.0764 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 64 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5216 0.2633 31.4476 REMARK 3 T TENSOR REMARK 3 T11: 0.5827 T22: 0.3072 REMARK 3 T33: 0.1828 T12: -0.0019 REMARK 3 T13: 0.0470 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 1.6972 L22: 4.5788 REMARK 3 L33: 10.0937 L12: 1.7278 REMARK 3 L13: 0.4943 L23: -0.6260 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: 0.0150 S13: 0.1388 REMARK 3 S21: 0.0154 S22: -0.0215 S23: 0.2241 REMARK 3 S31: 0.0604 S32: -0.0133 S33: 0.0761 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 190 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6892 11.1582 56.2401 REMARK 3 T TENSOR REMARK 3 T11: 0.3131 T22: 0.3485 REMARK 3 T33: 0.2182 T12: 0.0912 REMARK 3 T13: -0.0225 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 2.0354 L22: 3.4771 REMARK 3 L33: 3.3854 L12: -0.6860 REMARK 3 L13: -1.4223 L23: 1.0844 REMARK 3 S TENSOR REMARK 3 S11: 0.2612 S12: 0.5106 S13: 0.1431 REMARK 3 S21: -0.8135 S22: -0.1738 S23: 0.0844 REMARK 3 S31: -0.3780 S32: -0.5049 S33: -0.0874 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1290037169. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98040 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2FX0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, PEG3350, AMMONIUM SULFATE, PH REMARK 280 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.19150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.90700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.90700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.19150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 RESIDUES 169-186 SUBSTITUTED BY GSSGSSG LINKER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 3 REMARK 465 SER A 170 REMARK 465 SER A 171 REMARK 465 GLY A 172 REMARK 465 SER A 173 REMARK 465 SER A 174 REMARK 465 ALA B 3 REMARK 465 ALA B 65 REMARK 465 ASN B 66 REMARK 465 GLU B 67 REMARK 465 SER B 170 REMARK 465 SER B 171 REMARK 465 GLY B 172 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2006 O HOH B 2014 2.14 REMARK 500 OE1 GLU A 131 O HOH A 2049 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 49 72.29 40.17 REMARK 500 PRO A 69 -169.55 -79.31 REMARK 500 ASP A 168 -93.63 -126.34 REMARK 500 GLU B 111 60.62 60.62 REMARK 500 TYR B 121 35.33 -85.62 REMARK 500 PHE B 122 -38.18 -145.65 REMARK 500 ILE B 123 -54.00 -29.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1191 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JJ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HLYIIR MUTANT PROTEIN WITH RESIDUES 170- REMARK 900 185 SUBSTITUTED BY ALANINE REMARK 900 RELATED ID: 2FX0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HLYIIR, A HEMOLYSIN II TRANSCRIPTIONAL REMARK 900 REGULATOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEGMENT 169-186 SUBSTITUTED BY GSSGSSG LINKER DBREF 2JK3 A 3 3 PDB 2JK3 2JK3 3 3 DBREF 2JK3 A 4 168 UNP Q7X506 Q7X506_BACCE 4 168 DBREF 2JK3 A 169 175 PDB 2JK3 2JK3 169 175 DBREF 2JK3 A 176 190 UNP Q7X506 Q7X506_BACCE 187 201 DBREF 2JK3 B 3 3 PDB 2JK3 2JK3 3 3 DBREF 2JK3 B 4 168 UNP Q7X506 Q7X506_BACCE 4 168 DBREF 2JK3 B 169 175 PDB 2JK3 2JK3 169 175 DBREF 2JK3 B 176 190 UNP Q7X506 Q7X506_BACCE 187 201 SEQRES 1 A 188 ALA SER ARG GLU GLN THR MET GLU ASN ILE LEU LYS ALA SEQRES 2 A 188 ALA LYS LYS LYS PHE GLY GLU ARG GLY TYR GLU GLY THR SEQRES 3 A 188 SER ILE GLN GLU ILE ALA LYS GLU ALA LYS VAL ASN VAL SEQRES 4 A 188 ALA MET ALA SER TYR TYR PHE ASN GLY LYS GLU ASN LEU SEQRES 5 A 188 TYR TYR GLU VAL PHE LYS LYS TYR GLY LEU ALA ASN GLU SEQRES 6 A 188 LEU PRO ASN PHE LEU GLU LYS ASN GLN PHE ASN PRO ILE SEQRES 7 A 188 ASN ALA LEU ARG GLU TYR LEU THR VAL PHE THR THR HIS SEQRES 8 A 188 ILE LYS GLU ASN PRO GLU ILE GLY THR LEU ALA TYR GLU SEQRES 9 A 188 GLU ILE ILE LYS GLU SER ALA ARG LEU GLU LYS ILE LYS SEQRES 10 A 188 PRO TYR PHE ILE GLY SER PHE GLU GLN LEU LYS GLU ILE SEQRES 11 A 188 LEU GLN GLU GLY GLU LYS GLN GLY VAL PHE HIS PHE PHE SEQRES 12 A 188 SER ILE ASN HIS THR ILE HIS TRP ILE THR SER ILE VAL SEQRES 13 A 188 LEU PHE PRO LYS PHE LYS LYS PHE ILE ASP GLY SER SER SEQRES 14 A 188 GLY SER SER GLY LEU VAL SER ARG ILE ILE SER ALA LEU SEQRES 15 A 188 THR ASP LYS PRO ASN ILE SEQRES 1 B 188 ALA SER ARG GLU GLN THR MET GLU ASN ILE LEU LYS ALA SEQRES 2 B 188 ALA LYS LYS LYS PHE GLY GLU ARG GLY TYR GLU GLY THR SEQRES 3 B 188 SER ILE GLN GLU ILE ALA LYS GLU ALA LYS VAL ASN VAL SEQRES 4 B 188 ALA MET ALA SER TYR TYR PHE ASN GLY LYS GLU ASN LEU SEQRES 5 B 188 TYR TYR GLU VAL PHE LYS LYS TYR GLY LEU ALA ASN GLU SEQRES 6 B 188 LEU PRO ASN PHE LEU GLU LYS ASN GLN PHE ASN PRO ILE SEQRES 7 B 188 ASN ALA LEU ARG GLU TYR LEU THR VAL PHE THR THR HIS SEQRES 8 B 188 ILE LYS GLU ASN PRO GLU ILE GLY THR LEU ALA TYR GLU SEQRES 9 B 188 GLU ILE ILE LYS GLU SER ALA ARG LEU GLU LYS ILE LYS SEQRES 10 B 188 PRO TYR PHE ILE GLY SER PHE GLU GLN LEU LYS GLU ILE SEQRES 11 B 188 LEU GLN GLU GLY GLU LYS GLN GLY VAL PHE HIS PHE PHE SEQRES 12 B 188 SER ILE ASN HIS THR ILE HIS TRP ILE THR SER ILE VAL SEQRES 13 B 188 LEU PHE PRO LYS PHE LYS LYS PHE ILE ASP GLY SER SER SEQRES 14 B 188 GLY SER SER GLY LEU VAL SER ARG ILE ILE SER ALA LEU SEQRES 15 B 188 THR ASP LYS PRO ASN ILE HET SO4 B1191 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *140(H2 O) HELIX 1 1 SER A 4 THR A 28 1 25 HELIX 2 2 SER A 29 LYS A 38 1 10 HELIX 3 3 ASN A 40 ASN A 49 1 10 HELIX 4 4 GLY A 50 GLY A 63 1 14 HELIX 5 5 ASN A 70 ASN A 75 1 6 HELIX 6 6 ASN A 78 ASN A 97 1 20 HELIX 7 7 ASN A 97 LYS A 110 1 14 HELIX 8 8 ARG A 114 LYS A 119 1 6 HELIX 9 9 PHE A 122 GLN A 139 1 18 HELIX 10 10 SER A 146 LEU A 159 1 14 HELIX 11 11 PHE A 160 ASP A 168 1 9 HELIX 12 12 GLY A 175 ASP A 186 1 12 HELIX 13 13 SER B 4 GLY B 24 1 21 HELIX 14 14 SER B 29 LYS B 38 1 10 HELIX 15 15 ASN B 40 ASN B 49 1 10 HELIX 16 16 GLY B 50 GLY B 63 1 14 HELIX 17 17 ASN B 70 ASN B 75 1 6 HELIX 18 18 ASN B 78 ASN B 97 1 20 HELIX 19 19 ASN B 97 GLU B 111 1 15 HELIX 20 20 SER B 112 LYS B 119 1 8 HELIX 21 21 LYS B 119 GLN B 139 1 21 HELIX 22 22 SER B 146 PHE B 160 1 15 HELIX 23 23 PRO B 161 GLY B 169 1 9 HELIX 24 24 GLY B 175 ASP B 186 1 12 SITE 1 AC1 6 SER A 146 ASN A 148 SER B 173 SER B 174 SITE 2 AC1 6 ARG B 179 HOH B2056 CRYST1 38.383 78.990 143.814 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026053 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006953 0.00000