HEADER GENE REGULATION 27-AUG-08 2JKD TITLE STRUCTURE OF THE YEAST PML1 SPLICING FACTOR AND ITS INTEGRATION INTO TITLE 2 THE RES COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA LEAKAGE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FHA DOMAIN, RESIDUES 25-204; COMPND 5 SYNONYM: PML1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9 KEYWDS MRNA PROCESSING, PML1/SNU17/BUD13, PRE-MRNA SPLICING, SACCHAROMYCES KEYWDS 2 CEREVISIAE, PHOSPHO-PEPTIDE RECOGNITION, RES, NUCLEUS, MRNA KEYWDS 3 SPLICING, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR M.A.BROOKS,A.DZIEMBOWSKI,S.QUEVILLON-CHERUEL,V.HENRIOT,C.FAUX,H.VAN AUTHOR 2 TILBEURGH,B.SERAPHIN REVDAT 5 16-OCT-19 2JKD 1 REMARK REVDAT 4 13-JUL-11 2JKD 1 VERSN REVDAT 3 20-JAN-09 2JKD 1 JRNL REMARK REVDAT 2 09-DEC-08 2JKD 1 VERSN JRNL REVDAT 1 26-SEP-08 2JKD 0 JRNL AUTH M.A.BROOKS,A.DZIEMBOWSKI,S.QUEVILLON-CHERUEL,V.HENRIOT, JRNL AUTH 2 C.FAUX,H.VAN TILBEURGH,B.SERAPHIN JRNL TITL STRUCTURE OF THE YEAST PML1 SPLICING FACTOR AND ITS JRNL TITL 2 INTEGRATION INTO THE RES COMPLEX JRNL REF NUCLEIC ACIDS RES. V. 37 129 2009 JRNL REFN ISSN 0305-1048 JRNL PMID 19033360 JRNL DOI 10.1093/NAR/GKN894 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0065 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 13827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 721 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1985 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : -1.06000 REMARK 3 B33 (A**2) : 1.59000 REMARK 3 B12 (A**2) : -0.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.426 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.602 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2425 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3270 ; 1.445 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 3.049 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;26.919 ;24.355 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;10.073 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;12.942 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1834 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1463 ; 0.553 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2364 ; 1.065 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 962 ; 1.433 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 906 ; 2.371 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 44.0146 48.9940 25.8466 REMARK 3 T TENSOR REMARK 3 T11: -0.2248 T22: 0.0269 REMARK 3 T33: -0.0940 T12: 0.0504 REMARK 3 T13: -0.0763 T23: -0.1439 REMARK 3 L TENSOR REMARK 3 L11: 3.2670 L22: 3.8933 REMARK 3 L33: 3.6945 L12: 0.0865 REMARK 3 L13: 0.2989 L23: -0.6900 REMARK 3 S TENSOR REMARK 3 S11: -0.0737 S12: 0.1376 S13: 0.1585 REMARK 3 S21: 0.0447 S22: -0.1771 S23: 0.2470 REMARK 3 S31: -0.3701 S32: -0.3320 S33: 0.2508 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 206 REMARK 3 ORIGIN FOR THE GROUP (A): 66.7896 34.0076 15.5615 REMARK 3 T TENSOR REMARK 3 T11: -0.1624 T22: 0.0499 REMARK 3 T33: -0.0429 T12: 0.0103 REMARK 3 T13: 0.1217 T23: -0.0833 REMARK 3 L TENSOR REMARK 3 L11: 3.6527 L22: 3.3265 REMARK 3 L33: 3.9608 L12: 0.5674 REMARK 3 L13: 0.8105 L23: 0.1957 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: 0.2601 S13: -0.3043 REMARK 3 S21: -0.2830 S22: -0.1931 S23: -0.0385 REMARK 3 S31: 0.2499 S32: -0.1837 S33: 0.2446 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2JKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-AUG-08. REMARK 100 THE DEPOSITION ID IS D_1290037286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14550 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 2.940 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.98 REMARK 200 R MERGE FOR SHELL (I) : 0.22500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, PH 8.5, 0.2 M LISO4 AND REMARK 280 FROM 20 TO 30% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.22667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.61333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.61333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.22667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2024 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 24 REMARK 465 TYR A 25 REMARK 465 ILE A 26 REMARK 465 ASP A 27 REMARK 465 ILE A 28 REMARK 465 MET A 29 REMARK 465 PRO A 30 REMARK 465 ASP A 31 REMARK 465 PHE A 32 REMARK 465 SER A 33 REMARK 465 PRO A 34 REMARK 465 SER A 35 REMARK 465 GLY A 36 REMARK 465 LEU A 37 REMARK 465 LEU A 38 REMARK 465 GLU A 39 REMARK 465 LEU A 40 REMARK 465 GLU A 41 REMARK 465 SER A 42 REMARK 465 ASN A 43 REMARK 465 ASN A 44 REMARK 465 LYS A 45 REMARK 465 GLU A 46 REMARK 465 GLY A 47 REMARK 465 ILE A 48 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 ASP A 115 REMARK 465 THR A 116 REMARK 465 ASP A 117 REMARK 465 LEU A 118 REMARK 465 ASP A 119 REMARK 465 ASP A 120 REMARK 465 ARG A 121 REMARK 465 HIS A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 MET B 24 REMARK 465 TYR B 25 REMARK 465 ILE B 26 REMARK 465 ASP B 27 REMARK 465 ILE B 28 REMARK 465 MET B 29 REMARK 465 PRO B 30 REMARK 465 ASP B 31 REMARK 465 PHE B 32 REMARK 465 SER B 33 REMARK 465 PRO B 34 REMARK 465 SER B 35 REMARK 465 GLY B 36 REMARK 465 LEU B 37 REMARK 465 LEU B 38 REMARK 465 GLU B 39 REMARK 465 LEU B 40 REMARK 465 GLU B 41 REMARK 465 SER B 42 REMARK 465 ASN B 43 REMARK 465 ASN B 44 REMARK 465 LYS B 45 REMARK 465 GLU B 46 REMARK 465 GLY B 47 REMARK 465 ILE B 48 REMARK 465 ALA B 49 REMARK 465 LEU B 50 REMARK 465 HIS B 112 REMARK 465 SER B 113 REMARK 465 LEU B 114 REMARK 465 ASP B 115 REMARK 465 THR B 116 REMARK 465 ASP B 117 REMARK 465 LEU B 118 REMARK 465 ASP B 119 REMARK 465 ASP B 120 REMARK 465 ARG B 121 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 112 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 206 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 207 CA C O CB CG ND1 CD2 REMARK 470 HIS A 207 CE1 NE2 REMARK 470 HIS B 206 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 207 CA C O CB CG ND1 CD2 REMARK 470 HIS B 207 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 87 90.95 -162.19 REMARK 500 LEU A 159 46.16 -97.33 REMARK 500 LEU A 188 33.58 -96.57 REMARK 500 HIS A 205 -160.94 -118.06 REMARK 500 LEU B 159 43.93 -99.75 REMARK 500 ASN B 169 -6.72 75.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 24-48 AND 113-121 OF CHAIN A AND 24-50 AND 112-121 REMARK 999 OF CHAIN B WERE NOT MODELLED IN THE STRUCTURE DUE TO LACK REMARK 999 OF DENSITY. DBREF 2JKD A 24 24 PDB 2JKD 2JKD 24 24 DBREF 2JKD A 25 204 UNP Q07930 PML1_YEAST 25 204 DBREF 2JKD A 205 210 PDB 2JKD 2JKD 205 210 DBREF 2JKD B 24 24 PDB 2JKD 2JKD 24 24 DBREF 2JKD B 25 204 UNP Q07930 PML1_YEAST 25 204 DBREF 2JKD B 205 210 PDB 2JKD 2JKD 205 210 SEQRES 1 A 187 MET TYR ILE ASP ILE MET PRO ASP PHE SER PRO SER GLY SEQRES 2 A 187 LEU LEU GLU LEU GLU SER ASN ASN LYS GLU GLY ILE ALA SEQRES 3 A 187 LEU LYS HIS VAL GLU PRO GLN ASP ALA ILE SER PRO ASP SEQRES 4 A 187 ASN TYR MET ASP MET LEU GLY LEU GLU ALA ARG ASP ARG SEQRES 5 A 187 THR MET TYR GLU LEU VAL ILE TYR ARG LYS ASN ASP LYS SEQRES 6 A 187 ASP LYS GLY PRO TRP LYS ARG TYR ASP LEU ASN GLY ARG SEQRES 7 A 187 SER CYS TYR LEU VAL GLY ARG GLU LEU GLY HIS SER LEU SEQRES 8 A 187 ASP THR ASP LEU ASP ASP ARG THR GLU ILE VAL VAL ALA SEQRES 9 A 187 ASP ILE GLY ILE PRO GLU GLU THR SER SER LYS GLN HIS SEQRES 10 A 187 CYS VAL ILE GLN PHE ARG ASN VAL ARG GLY ILE LEU LYS SEQRES 11 A 187 CYS TYR VAL MET ASP LEU ASP SER SER ASN GLY THR CYS SEQRES 12 A 187 LEU ASN ASN VAL VAL ILE PRO GLY ALA ARG TYR ILE GLU SEQRES 13 A 187 LEU ARG SER GLY ASP VAL LEU THR LEU SER GLU PHE GLU SEQRES 14 A 187 GLU ASP ASN ASP TYR GLU LEU ILE PHE MET ASN VAL HIS SEQRES 15 A 187 HIS HIS HIS HIS HIS SEQRES 1 B 187 MET TYR ILE ASP ILE MET PRO ASP PHE SER PRO SER GLY SEQRES 2 B 187 LEU LEU GLU LEU GLU SER ASN ASN LYS GLU GLY ILE ALA SEQRES 3 B 187 LEU LYS HIS VAL GLU PRO GLN ASP ALA ILE SER PRO ASP SEQRES 4 B 187 ASN TYR MET ASP MET LEU GLY LEU GLU ALA ARG ASP ARG SEQRES 5 B 187 THR MET TYR GLU LEU VAL ILE TYR ARG LYS ASN ASP LYS SEQRES 6 B 187 ASP LYS GLY PRO TRP LYS ARG TYR ASP LEU ASN GLY ARG SEQRES 7 B 187 SER CYS TYR LEU VAL GLY ARG GLU LEU GLY HIS SER LEU SEQRES 8 B 187 ASP THR ASP LEU ASP ASP ARG THR GLU ILE VAL VAL ALA SEQRES 9 B 187 ASP ILE GLY ILE PRO GLU GLU THR SER SER LYS GLN HIS SEQRES 10 B 187 CYS VAL ILE GLN PHE ARG ASN VAL ARG GLY ILE LEU LYS SEQRES 11 B 187 CYS TYR VAL MET ASP LEU ASP SER SER ASN GLY THR CYS SEQRES 12 B 187 LEU ASN ASN VAL VAL ILE PRO GLY ALA ARG TYR ILE GLU SEQRES 13 B 187 LEU ARG SER GLY ASP VAL LEU THR LEU SER GLU PHE GLU SEQRES 14 B 187 GLU ASP ASN ASP TYR GLU LEU ILE PHE MET ASN VAL HIS SEQRES 15 B 187 HIS HIS HIS HIS HIS HET GOL A 301 6 HET GOL A 302 6 HET SO4 A 401 5 HET GOL B 301 6 HET SO4 B 401 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 SO4 2(O4 S 2-) FORMUL 8 HOH *46(H2 O) HELIX 1 1 SER A 60 LEU A 68 1 9 HELIX 2 2 GLU A 71 ARG A 75 5 5 HELIX 3 3 PHE A 191 ASN A 195 5 5 HELIX 4 4 SER B 60 LEU B 68 1 9 HELIX 5 5 GLU B 71 ARG B 75 5 5 HELIX 6 6 ASP B 87 GLY B 91 5 5 SHEET 1 AA 6 LYS A 94 ASP A 97 0 SHEET 2 AA 6 MET A 77 ARG A 84 -1 O LEU A 80 N TYR A 96 SHEET 3 AA 6 TYR A 197 VAL A 204 -1 O GLU A 198 N TYR A 83 SHEET 4 AA 6 VAL A 185 THR A 187 -1 O LEU A 186 N LEU A 199 SHEET 5 AA 6 CYS A 166 LEU A 167 -1 O CYS A 166 N THR A 187 SHEET 6 AA 6 VAL A 170 VAL A 171 -1 O VAL A 170 N LEU A 167 SHEET 1 AB 5 ILE A 129 ILE A 131 0 SHEET 2 AB 5 CYS A 103 ARG A 108 1 O LEU A 105 N ILE A 129 SHEET 3 AB 5 CYS A 141 VAL A 148 -1 O CYS A 141 N VAL A 106 SHEET 4 AB 5 ILE A 151 ASP A 158 -1 O ILE A 151 N VAL A 148 SHEET 5 AB 5 ILE A 178 LEU A 180 -1 O ILE A 178 N VAL A 156 SHEET 1 BA 6 LYS B 94 ASP B 97 0 SHEET 2 BA 6 MET B 77 ARG B 84 -1 O LEU B 80 N TYR B 96 SHEET 3 BA 6 TYR B 197 VAL B 204 -1 O GLU B 198 N TYR B 83 SHEET 4 BA 6 VAL B 185 THR B 187 -1 O LEU B 186 N LEU B 199 SHEET 5 BA 6 CYS B 166 LEU B 167 -1 O CYS B 166 N THR B 187 SHEET 6 BA 6 VAL B 170 VAL B 171 -1 O VAL B 170 N LEU B 167 SHEET 1 BB 5 ILE B 129 ILE B 131 0 SHEET 2 BB 5 CYS B 103 ARG B 108 1 O LEU B 105 N ILE B 129 SHEET 3 BB 5 CYS B 141 VAL B 148 -1 O CYS B 141 N VAL B 106 SHEET 4 BB 5 ILE B 151 ASP B 158 -1 O ILE B 151 N VAL B 148 SHEET 5 BB 5 ILE B 178 GLU B 179 -1 O ILE B 178 N VAL B 156 SITE 1 AC1 3 SER A 182 ASN A 203 HIS A 205 SITE 1 AC2 5 ALA A 58 ILE A 59 ASN A 147 LEU B 68 SITE 2 AC2 5 LEU B 70 SITE 1 AC3 3 ARG A 108 SER A 137 LYS A 138 SITE 1 AC4 8 ILE A 151 TYR B 78 LEU B 152 CYS B 154 SITE 2 AC4 8 GLU B 179 LEU B 180 PHE B 201 ASN B 203 SITE 1 AC5 3 ARG B 108 SER B 137 LYS B 138 CRYST1 85.720 85.720 97.840 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011666 0.006735 0.000000 0.00000 SCALE2 0.000000 0.013471 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010221 0.00000 MTRIX1 1 -0.671000 -0.741300 0.013800 132.28270 1 MTRIX2 1 0.741200 -0.671100 -0.012500 34.59300 1 MTRIX3 1 0.018500 0.001900 0.999800 -11.36030 1