data_2JLI # _entry.id 2JLI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2JLI PDBE EBI-37202 WWPDB D_1290037202 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2JLJ unspecified 'CRYSTAL STRUCTURE OF THE CYTOPLASMIC DOMAIN OF YERSINIA PESTIS YSCU N263A P264A MUTANT' PDB 2JLH unspecified 'CRYSTAL STRUCTURE OF THE CYTOPLASMIC DOMAIN OF YERSINIA PESTIS YSCU N263A MUTANT' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2JLI _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-09-09 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lountos, G.T.' 1 'Austin, B.P.' 2 'Nallamsetty, S.' 3 'Waugh, D.S.' 4 # _citation.id primary _citation.title 'Atomic Resolution Structure of the Cytoplasmic Domain of Yersinia Pestis Yscu, a Regulatory Switch Involved in Type III Secretion.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 18 _citation.page_first 467 _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19165725 _citation.pdbx_database_id_DOI 10.1002/PRO.56 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lountos, G.T.' 1 primary 'Austin, B.P.' 2 primary 'Nallamsetty, S.' 3 primary 'Waugh, D.S.' 4 # _cell.entry_id 2JLI _cell.length_a 48.162 _cell.length_b 48.162 _cell.length_c 190.204 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JLI _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'YOP PROTEINS TRANSLOCATION PROTEIN' 14376.495 1 ? ? 'YSCU CYTOPLASMIC DOMAIN, RESIDUES 220-342' 'CLEAVED PEPTIDE BOND BETWEEN N263 AND P264' 2 water nat water 18.015 161 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name YSCU # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIA EEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE ; _entity_poly.pdbx_seq_one_letter_code_can ;EIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIA EEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ILE n 1 3 LYS n 1 4 ARG n 1 5 GLU n 1 6 TYR n 1 7 LYS n 1 8 GLU n 1 9 MET n 1 10 GLU n 1 11 GLY n 1 12 SER n 1 13 PRO n 1 14 GLU n 1 15 ILE n 1 16 LYS n 1 17 SER n 1 18 LYS n 1 19 ARG n 1 20 ARG n 1 21 GLN n 1 22 PHE n 1 23 HIS n 1 24 GLN n 1 25 GLU n 1 26 ILE n 1 27 GLN n 1 28 SER n 1 29 ARG n 1 30 ASN n 1 31 MET n 1 32 ARG n 1 33 GLU n 1 34 ASN n 1 35 VAL n 1 36 LYS n 1 37 ARG n 1 38 SER n 1 39 SER n 1 40 VAL n 1 41 VAL n 1 42 VAL n 1 43 ALA n 1 44 ASN n 1 45 PRO n 1 46 THR n 1 47 HIS n 1 48 ILE n 1 49 ALA n 1 50 ILE n 1 51 GLY n 1 52 ILE n 1 53 LEU n 1 54 TYR n 1 55 LYS n 1 56 ARG n 1 57 GLY n 1 58 GLU n 1 59 THR n 1 60 PRO n 1 61 LEU n 1 62 PRO n 1 63 LEU n 1 64 VAL n 1 65 THR n 1 66 PHE n 1 67 LYS n 1 68 TYR n 1 69 THR n 1 70 ASP n 1 71 ALA n 1 72 GLN n 1 73 VAL n 1 74 GLN n 1 75 THR n 1 76 VAL n 1 77 ARG n 1 78 LYS n 1 79 ILE n 1 80 ALA n 1 81 GLU n 1 82 GLU n 1 83 GLU n 1 84 GLY n 1 85 VAL n 1 86 PRO n 1 87 ILE n 1 88 LEU n 1 89 GLN n 1 90 ARG n 1 91 ILE n 1 92 PRO n 1 93 LEU n 1 94 ALA n 1 95 ARG n 1 96 ALA n 1 97 LEU n 1 98 TYR n 1 99 TRP n 1 100 ASP n 1 101 ALA n 1 102 LEU n 1 103 VAL n 1 104 ASP n 1 105 HIS n 1 106 TYR n 1 107 ILE n 1 108 PRO n 1 109 ALA n 1 110 GLU n 1 111 GLN n 1 112 ILE n 1 113 GLU n 1 114 ALA n 1 115 THR n 1 116 ALA n 1 117 GLU n 1 118 VAL n 1 119 LEU n 1 120 ARG n 1 121 TRP n 1 122 LEU n 1 123 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'YERSINIA PESTIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 632 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PBA2085 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YSCU_YERPE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P69986 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2JLI A 1 ? 44 ? P69986 220 ? 263 ? 220 263 2 1 2JLI A 45 ? 123 ? P69986 264 ? 342 ? 264 342 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2JLI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.3 _exptl_crystal.density_percent_sol 45.7 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '100 MM CHESS PH 9.5, 30% V/V PEG 400' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2008-04-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2JLI _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.13 _reflns.number_obs 49262 _reflns.number_all ? _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 50.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.13 _reflns_shell.d_res_low 1.16 _reflns_shell.percent_possible_all 91.1 _reflns_shell.Rmerge_I_obs 0.40 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.20 _reflns_shell.pdbx_redundancy 11.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2JLI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 46638 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.70 _refine.ls_d_res_high 1.13 _refine.ls_percent_reflns_obs 98.2 _refine.ls_R_factor_obs 0.164 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.164 _refine.ls_R_factor_R_free 0.168 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 2506 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.967 _refine.B_iso_mean 14.79 _refine.aniso_B[1][1] 0.18000 _refine.aniso_B[2][2] 0.18000 _refine.aniso_B[3][3] -0.27000 _refine.aniso_B[1][2] 0.09000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.031 _refine.pdbx_overall_ESU_R_Free 0.028 _refine.overall_SU_ML 0.013 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.589 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 771 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 161 _refine_hist.number_atoms_total 932 _refine_hist.d_res_high 1.13 _refine_hist.d_res_low 41.70 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.023 0.022 ? 862 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 584 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.232 1.970 ? 1191 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.130 3.000 ? 1439 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.739 5.000 ? 121 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.113 23.514 ? 37 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 9.989 15.000 ? 149 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7.495 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.137 0.200 ? 141 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.021 ? 967 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 171 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.048 1.500 ? 533 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.043 2.000 ? 878 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.646 3.000 ? 329 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 5.317 4.500 ? 301 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.13 _refine_ls_shell.d_res_low 1.16 _refine_ls_shell.number_reflns_R_work 3331 _refine_ls_shell.R_factor_R_work 0.2670 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2920 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 185 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2JLI _struct.title 'Atomic resolution structure of the cytoplasmic domain of Yersinia pestis YscU, a regulatory switch involved in type III secretion' _struct.pdbx_descriptor 'YOP PROTEINS TRANSLOCATION PROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JLI _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text ;CELL MEMBRANE, TRANSMEMBRANE, YERSINIA PESTIS, PROTEIN TRANSPORT, TYPE III SECRETION SYSTEM, PLASMID, MEMBRANE, VIRULENCE, TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 21 ? ARG A 37 ? GLN A 240 ARG A 256 1 ? 17 HELX_P HELX_P2 2 ALA A 71 ? GLY A 84 ? ALA A 290 GLY A 303 1 ? 14 HELX_P HELX_P3 3 ARG A 90 ? ALA A 101 ? ARG A 309 ALA A 320 1 ? 12 HELX_P HELX_P4 4 PRO A 108 ? GLU A 110 ? PRO A 327 GLU A 329 5 ? 3 HELX_P HELX_P5 5 GLN A 111 ? ARG A 120 ? GLN A 330 ARG A 339 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id BA _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id BA 1 LEU A 63 ? THR A 69 ? LEU A 282 THR A 288 BA 2 ILE A 48 ? LEU A 53 ? ILE A 267 LEU A 272 BA 3 VAL A 40 ? ASN A 44 ? VAL A 259 ASN A 263 BA 4 ILE A 87 ? GLN A 89 ? ILE A 306 GLN A 308 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id BA 1 2 N TYR A 68 ? N TYR A 287 O ALA A 49 ? O ALA A 268 BA 2 3 N ILE A 52 ? N ILE A 271 O VAL A 40 ? O VAL A 259 BA 3 4 N ALA A 43 ? N ALA A 262 O LEU A 88 ? O LEU A 307 # _database_PDB_matrix.entry_id 2JLI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2JLI _atom_sites.fract_transf_matrix[1][1] 0.020763 _atom_sites.fract_transf_matrix[1][2] 0.011988 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023975 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005258 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 220 ? ? ? A . n A 1 2 ILE 2 221 ? ? ? A . n A 1 3 LYS 3 222 ? ? ? A . n A 1 4 ARG 4 223 ? ? ? A . n A 1 5 GLU 5 224 ? ? ? A . n A 1 6 TYR 6 225 ? ? ? A . n A 1 7 LYS 7 226 ? ? ? A . n A 1 8 GLU 8 227 ? ? ? A . n A 1 9 MET 9 228 ? ? ? A . n A 1 10 GLU 10 229 ? ? ? A . n A 1 11 GLY 11 230 ? ? ? A . n A 1 12 SER 12 231 ? ? ? A . n A 1 13 PRO 13 232 ? ? ? A . n A 1 14 GLU 14 233 ? ? ? A . n A 1 15 ILE 15 234 ? ? ? A . n A 1 16 LYS 16 235 ? ? ? A . n A 1 17 SER 17 236 ? ? ? A . n A 1 18 LYS 18 237 ? ? ? A . n A 1 19 ARG 19 238 ? ? ? A . n A 1 20 ARG 20 239 ? ? ? A . n A 1 21 GLN 21 240 240 GLN GLN A . n A 1 22 PHE 22 241 241 PHE PHE A . n A 1 23 HIS 23 242 242 HIS HIS A . n A 1 24 GLN 24 243 243 GLN GLN A . n A 1 25 GLU 25 244 244 GLU GLU A . n A 1 26 ILE 26 245 245 ILE ILE A . n A 1 27 GLN 27 246 246 GLN GLN A . n A 1 28 SER 28 247 247 SER SER A . n A 1 29 ARG 29 248 248 ARG ARG A . n A 1 30 ASN 30 249 249 ASN ASN A . n A 1 31 MET 31 250 250 MET MET A . n A 1 32 ARG 32 251 251 ARG ARG A . n A 1 33 GLU 33 252 252 GLU GLU A . n A 1 34 ASN 34 253 253 ASN ASN A . n A 1 35 VAL 35 254 254 VAL VAL A . n A 1 36 LYS 36 255 255 LYS LYS A . n A 1 37 ARG 37 256 256 ARG ARG A . n A 1 38 SER 38 257 257 SER SER A . n A 1 39 SER 39 258 258 SER SER A . n A 1 40 VAL 40 259 259 VAL VAL A . n A 1 41 VAL 41 260 260 VAL VAL A . n A 1 42 VAL 42 261 261 VAL VAL A . n A 1 43 ALA 43 262 262 ALA ALA A . n A 1 44 ASN 44 263 263 ASN ASN A . n A 1 45 PRO 45 264 264 PRO PRO A . n A 1 46 THR 46 265 265 THR THR A . n A 1 47 HIS 47 266 266 HIS HIS A . n A 1 48 ILE 48 267 267 ILE ILE A . n A 1 49 ALA 49 268 268 ALA ALA A . n A 1 50 ILE 50 269 269 ILE ILE A . n A 1 51 GLY 51 270 270 GLY GLY A . n A 1 52 ILE 52 271 271 ILE ILE A . n A 1 53 LEU 53 272 272 LEU LEU A . n A 1 54 TYR 54 273 273 TYR TYR A . n A 1 55 LYS 55 274 274 LYS LYS A . n A 1 56 ARG 56 275 275 ARG ARG A . n A 1 57 GLY 57 276 276 GLY GLY A . n A 1 58 GLU 58 277 277 GLU GLU A . n A 1 59 THR 59 278 278 THR THR A . n A 1 60 PRO 60 279 279 PRO PRO A . n A 1 61 LEU 61 280 280 LEU LEU A . n A 1 62 PRO 62 281 281 PRO PRO A . n A 1 63 LEU 63 282 282 LEU LEU A . n A 1 64 VAL 64 283 283 VAL VAL A . n A 1 65 THR 65 284 284 THR THR A . n A 1 66 PHE 66 285 285 PHE PHE A . n A 1 67 LYS 67 286 286 LYS LYS A . n A 1 68 TYR 68 287 287 TYR TYR A . n A 1 69 THR 69 288 288 THR THR A . n A 1 70 ASP 70 289 289 ASP ASP A . n A 1 71 ALA 71 290 290 ALA ALA A . n A 1 72 GLN 72 291 291 GLN GLN A . n A 1 73 VAL 73 292 292 VAL VAL A . n A 1 74 GLN 74 293 293 GLN GLN A . n A 1 75 THR 75 294 294 THR THR A . n A 1 76 VAL 76 295 295 VAL VAL A . n A 1 77 ARG 77 296 296 ARG ARG A . n A 1 78 LYS 78 297 297 LYS LYS A . n A 1 79 ILE 79 298 298 ILE ILE A . n A 1 80 ALA 80 299 299 ALA ALA A . n A 1 81 GLU 81 300 300 GLU GLU A . n A 1 82 GLU 82 301 301 GLU GLU A . n A 1 83 GLU 83 302 302 GLU GLU A . n A 1 84 GLY 84 303 303 GLY GLY A . n A 1 85 VAL 85 304 304 VAL VAL A . n A 1 86 PRO 86 305 305 PRO PRO A . n A 1 87 ILE 87 306 306 ILE ILE A . n A 1 88 LEU 88 307 307 LEU LEU A . n A 1 89 GLN 89 308 308 GLN GLN A . n A 1 90 ARG 90 309 309 ARG ARG A . n A 1 91 ILE 91 310 310 ILE ILE A . n A 1 92 PRO 92 311 311 PRO PRO A . n A 1 93 LEU 93 312 312 LEU LEU A . n A 1 94 ALA 94 313 313 ALA ALA A . n A 1 95 ARG 95 314 314 ARG ARG A . n A 1 96 ALA 96 315 315 ALA ALA A . n A 1 97 LEU 97 316 316 LEU LEU A . n A 1 98 TYR 98 317 317 TYR TYR A . n A 1 99 TRP 99 318 318 TRP TRP A . n A 1 100 ASP 100 319 319 ASP ASP A . n A 1 101 ALA 101 320 320 ALA ALA A . n A 1 102 LEU 102 321 321 LEU LEU A . n A 1 103 VAL 103 322 322 VAL VAL A . n A 1 104 ASP 104 323 323 ASP ASP A . n A 1 105 HIS 105 324 324 HIS HIS A . n A 1 106 TYR 106 325 325 TYR TYR A . n A 1 107 ILE 107 326 326 ILE ILE A . n A 1 108 PRO 108 327 327 PRO PRO A . n A 1 109 ALA 109 328 328 ALA ALA A . n A 1 110 GLU 110 329 329 GLU GLU A . n A 1 111 GLN 111 330 330 GLN GLN A . n A 1 112 ILE 112 331 331 ILE ILE A . n A 1 113 GLU 113 332 332 GLU GLU A . n A 1 114 ALA 114 333 333 ALA ALA A . n A 1 115 THR 115 334 334 THR THR A . n A 1 116 ALA 116 335 335 ALA ALA A . n A 1 117 GLU 117 336 336 GLU GLU A . n A 1 118 VAL 118 337 337 VAL VAL A . n A 1 119 LEU 119 338 338 LEU LEU A . n A 1 120 ARG 120 339 339 ARG ARG A . n A 1 121 TRP 121 340 ? ? ? A . n A 1 122 LEU 122 341 ? ? ? A . n A 1 123 GLU 123 342 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2001 2001 HOH HOH A . B 2 HOH 2 2002 2002 HOH HOH A . B 2 HOH 3 2003 2003 HOH HOH A . B 2 HOH 4 2004 2004 HOH HOH A . B 2 HOH 5 2005 2005 HOH HOH A . B 2 HOH 6 2006 2006 HOH HOH A . B 2 HOH 7 2007 2007 HOH HOH A . B 2 HOH 8 2008 2008 HOH HOH A . B 2 HOH 9 2009 2009 HOH HOH A . B 2 HOH 10 2010 2010 HOH HOH A . B 2 HOH 11 2011 2011 HOH HOH A . B 2 HOH 12 2012 2012 HOH HOH A . B 2 HOH 13 2013 2013 HOH HOH A . B 2 HOH 14 2014 2014 HOH HOH A . B 2 HOH 15 2015 2015 HOH HOH A . B 2 HOH 16 2016 2016 HOH HOH A . B 2 HOH 17 2017 2017 HOH HOH A . B 2 HOH 18 2018 2018 HOH HOH A . B 2 HOH 19 2019 2019 HOH HOH A . B 2 HOH 20 2020 2020 HOH HOH A . B 2 HOH 21 2021 2021 HOH HOH A . B 2 HOH 22 2022 2022 HOH HOH A . B 2 HOH 23 2023 2023 HOH HOH A . B 2 HOH 24 2024 2024 HOH HOH A . B 2 HOH 25 2025 2025 HOH HOH A . B 2 HOH 26 2026 2026 HOH HOH A . B 2 HOH 27 2027 2027 HOH HOH A . B 2 HOH 28 2028 2028 HOH HOH A . B 2 HOH 29 2029 2029 HOH HOH A . B 2 HOH 30 2030 2030 HOH HOH A . B 2 HOH 31 3001 3001 HOH HOH A . B 2 HOH 32 3002 3002 HOH HOH A . B 2 HOH 33 3003 3003 HOH HOH A . B 2 HOH 34 3004 3004 HOH HOH A . B 2 HOH 35 3005 3005 HOH HOH A . B 2 HOH 36 3006 3006 HOH HOH A . B 2 HOH 37 3007 3007 HOH HOH A . B 2 HOH 38 3008 3008 HOH HOH A . B 2 HOH 39 3009 3009 HOH HOH A . B 2 HOH 40 3010 3010 HOH HOH A . B 2 HOH 41 3011 3011 HOH HOH A . B 2 HOH 42 3012 3012 HOH HOH A . B 2 HOH 43 3013 3013 HOH HOH A . B 2 HOH 44 3014 3014 HOH HOH A . B 2 HOH 45 3015 3015 HOH HOH A . B 2 HOH 46 3016 3016 HOH HOH A . B 2 HOH 47 3017 3017 HOH HOH A . B 2 HOH 48 3018 3018 HOH HOH A . B 2 HOH 49 3019 3019 HOH HOH A . B 2 HOH 50 3020 3020 HOH HOH A . B 2 HOH 51 3021 3021 HOH HOH A . B 2 HOH 52 3022 3022 HOH HOH A . B 2 HOH 53 3023 3023 HOH HOH A . B 2 HOH 54 3024 3024 HOH HOH A . B 2 HOH 55 3025 3025 HOH HOH A . B 2 HOH 56 3026 3026 HOH HOH A . B 2 HOH 57 3027 3027 HOH HOH A . B 2 HOH 58 3028 3028 HOH HOH A . B 2 HOH 59 3029 3029 HOH HOH A . B 2 HOH 60 3030 3030 HOH HOH A . B 2 HOH 61 3031 3031 HOH HOH A . B 2 HOH 62 3032 3032 HOH HOH A . B 2 HOH 63 3033 3033 HOH HOH A . B 2 HOH 64 3034 3034 HOH HOH A . B 2 HOH 65 3035 3035 HOH HOH A . B 2 HOH 66 3036 3036 HOH HOH A . B 2 HOH 67 3037 3037 HOH HOH A . B 2 HOH 68 3038 3038 HOH HOH A . B 2 HOH 69 3039 3039 HOH HOH A . B 2 HOH 70 3040 3040 HOH HOH A . B 2 HOH 71 3041 3041 HOH HOH A . B 2 HOH 72 3042 3042 HOH HOH A . B 2 HOH 73 3043 3043 HOH HOH A . B 2 HOH 74 3044 3044 HOH HOH A . B 2 HOH 75 3045 3045 HOH HOH A . B 2 HOH 76 3046 3046 HOH HOH A . B 2 HOH 77 3047 3047 HOH HOH A . B 2 HOH 78 3048 3048 HOH HOH A . B 2 HOH 79 3049 3049 HOH HOH A . B 2 HOH 80 3050 3050 HOH HOH A . B 2 HOH 81 3051 3051 HOH HOH A . B 2 HOH 82 3052 3052 HOH HOH A . B 2 HOH 83 3053 3053 HOH HOH A . B 2 HOH 84 3054 3054 HOH HOH A . B 2 HOH 85 3055 3055 HOH HOH A . B 2 HOH 86 3056 3056 HOH HOH A . B 2 HOH 87 3057 3057 HOH HOH A . B 2 HOH 88 3058 3058 HOH HOH A . B 2 HOH 89 3059 3059 HOH HOH A . B 2 HOH 90 3060 3060 HOH HOH A . B 2 HOH 91 3061 3061 HOH HOH A . B 2 HOH 92 3062 3062 HOH HOH A . B 2 HOH 93 3063 3063 HOH HOH A . B 2 HOH 94 3064 3064 HOH HOH A . B 2 HOH 95 3065 3065 HOH HOH A . B 2 HOH 96 3066 3066 HOH HOH A . B 2 HOH 97 3067 3067 HOH HOH A . B 2 HOH 98 3068 3068 HOH HOH A . B 2 HOH 99 3069 3069 HOH HOH A . B 2 HOH 100 3070 3070 HOH HOH A . B 2 HOH 101 3071 3071 HOH HOH A . B 2 HOH 102 3072 3072 HOH HOH A . B 2 HOH 103 3073 3073 HOH HOH A . B 2 HOH 104 3074 3074 HOH HOH A . B 2 HOH 105 3075 3075 HOH HOH A . B 2 HOH 106 3076 3076 HOH HOH A . B 2 HOH 107 3077 3077 HOH HOH A . B 2 HOH 108 3078 3078 HOH HOH A . B 2 HOH 109 3079 3079 HOH HOH A . B 2 HOH 110 3080 3080 HOH HOH A . B 2 HOH 111 3081 3081 HOH HOH A . B 2 HOH 112 3082 3082 HOH HOH A . B 2 HOH 113 3083 3083 HOH HOH A . B 2 HOH 114 3084 3084 HOH HOH A . B 2 HOH 115 3085 3085 HOH HOH A . B 2 HOH 116 3086 3086 HOH HOH A . B 2 HOH 117 3087 3087 HOH HOH A . B 2 HOH 118 3088 3088 HOH HOH A . B 2 HOH 119 3089 3089 HOH HOH A . B 2 HOH 120 3090 3090 HOH HOH A . B 2 HOH 121 3091 3091 HOH HOH A . B 2 HOH 122 3092 3092 HOH HOH A . B 2 HOH 123 3093 3093 HOH HOH A . B 2 HOH 124 3094 3094 HOH HOH A . B 2 HOH 125 3095 3095 HOH HOH A . B 2 HOH 126 3096 3096 HOH HOH A . B 2 HOH 127 3097 3097 HOH HOH A . B 2 HOH 128 3098 3098 HOH HOH A . B 2 HOH 129 3099 3099 HOH HOH A . B 2 HOH 130 3100 3100 HOH HOH A . B 2 HOH 131 3101 3101 HOH HOH A . B 2 HOH 132 3102 3102 HOH HOH A . B 2 HOH 133 3103 3103 HOH HOH A . B 2 HOH 134 3104 3104 HOH HOH A . B 2 HOH 135 3105 3105 HOH HOH A . B 2 HOH 136 3106 3106 HOH HOH A . B 2 HOH 137 3107 3107 HOH HOH A . B 2 HOH 138 3108 3108 HOH HOH A . B 2 HOH 139 3109 3109 HOH HOH A . B 2 HOH 140 3110 3110 HOH HOH A . B 2 HOH 141 3111 3111 HOH HOH A . B 2 HOH 142 3112 3112 HOH HOH A . B 2 HOH 143 3113 3113 HOH HOH A . B 2 HOH 144 3114 3114 HOH HOH A . B 2 HOH 145 3115 3115 HOH HOH A . B 2 HOH 146 3116 3116 HOH HOH A . B 2 HOH 147 3117 3117 HOH HOH A . B 2 HOH 148 3118 3118 HOH HOH A . B 2 HOH 149 3119 3119 HOH HOH A . B 2 HOH 150 3120 3120 HOH HOH A . B 2 HOH 151 3121 3121 HOH HOH A . B 2 HOH 152 3122 3122 HOH HOH A . B 2 HOH 153 3123 3123 HOH HOH A . B 2 HOH 154 3124 3124 HOH HOH A . B 2 HOH 155 3125 3125 HOH HOH A . B 2 HOH 156 3126 3126 HOH HOH A . B 2 HOH 157 3127 3127 HOH HOH A . B 2 HOH 158 3128 3128 HOH HOH A . B 2 HOH 159 3129 3129 HOH HOH A . B 2 HOH 160 3130 3130 HOH HOH A . B 2 HOH 161 3131 3131 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-03 2 'Structure model' 1 1 2011-05-07 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.4.0057 ? 1 HKL-3000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_entry_details.entry_id 2JLI _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'CLEAVED PEPTIDE BOND BETWEEN N263 AND P264' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H A PRO 264 ? ? O A HOH 3029 ? ? 1.57 2 1 H A PRO 264 ? ? O A HOH 3030 ? ? 1.58 3 1 O A HOH 3107 ? ? O A HOH 3111 ? ? 1.65 4 1 O A HOH 3097 ? ? O A HOH 3100 ? ? 1.91 5 1 O A HOH 3086 ? ? O A HOH 3087 ? ? 1.92 6 1 O A HOH 3029 ? ? O A HOH 3030 ? ? 2.02 7 1 O A HOH 2028 ? ? O A HOH 3048 ? ? 2.08 8 1 N A PRO 264 ? ? O A HOH 3030 ? ? 2.13 9 1 O A HOH 3010 ? ? O A HOH 3100 ? ? 2.15 10 1 N A PRO 264 ? ? O A HOH 3029 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 2008 ? ? 1_555 O A HOH 3098 ? ? 8_445 1.91 2 1 O A HOH 3054 ? ? 1_555 O A HOH 3076 ? ? 8_545 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A SER 247 ? ? O A SER 247 ? ? 1.026 1.229 -0.203 0.019 N 2 1 N A ARG 248 ? ? CA A ARG 248 ? ? 1.270 1.459 -0.189 0.020 N 3 1 CB A GLU 332 ? ? CG A GLU 332 ? ? 1.400 1.517 -0.117 0.019 N 4 1 CG A GLU 332 ? ? CD A GLU 332 ? ? 1.415 1.515 -0.100 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A SER 247 ? A C A SER 247 ? ? N A ARG 248 ? ? 131.89 117.20 14.69 2.20 Y 2 1 CA A SER 247 ? B C A SER 247 ? ? N A ARG 248 ? ? 131.42 117.20 14.22 2.20 Y 3 1 O A SER 247 ? ? C A SER 247 ? ? N A ARG 248 ? ? 108.22 122.70 -14.48 1.60 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 248 ? ? 89.96 -109.31 2 1 ASP A 289 ? ? 54.15 -127.51 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 SER A 247 ? A ARG A 248 ? ? 41.45 2 1 SER A 247 ? B ARG A 248 ? ? 43.13 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 ASN _pdbx_validate_polymer_linkage.auth_seq_id_1 263 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 PRO _pdbx_validate_polymer_linkage.auth_seq_id_2 264 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 10.07 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 3024 ? 7.65 . 2 1 O ? A HOH 3025 ? 6.56 . 3 1 O ? A HOH 3028 ? 8.79 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 240 ? CB ? A GLN 21 CB 2 1 Y 1 A GLN 240 ? CG ? A GLN 21 CG 3 1 Y 1 A GLN 240 ? CD ? A GLN 21 CD 4 1 Y 1 A GLN 240 ? OE1 ? A GLN 21 OE1 5 1 Y 1 A GLN 240 ? NE2 ? A GLN 21 NE2 6 1 Y 1 A HIS 242 ? CB ? A HIS 23 CB 7 1 Y 1 A HIS 242 ? CG ? A HIS 23 CG 8 1 Y 1 A HIS 242 ? ND1 ? A HIS 23 ND1 9 1 Y 1 A HIS 242 ? CD2 ? A HIS 23 CD2 10 1 Y 1 A HIS 242 ? CE1 ? A HIS 23 CE1 11 1 Y 1 A HIS 242 ? NE2 ? A HIS 23 NE2 12 1 Y 1 A GLN 243 ? CB ? A GLN 24 CB 13 1 Y 1 A GLN 243 ? CG ? A GLN 24 CG 14 1 Y 1 A GLN 243 ? CD ? A GLN 24 CD 15 1 Y 1 A GLN 243 ? OE1 ? A GLN 24 OE1 16 1 Y 1 A GLN 243 ? NE2 ? A GLN 24 NE2 17 1 Y 1 A GLU 244 ? CB ? A GLU 25 CB 18 1 Y 1 A GLU 244 ? CG ? A GLU 25 CG 19 1 Y 1 A GLU 244 ? CD ? A GLU 25 CD 20 1 Y 1 A GLU 244 ? OE1 ? A GLU 25 OE1 21 1 Y 1 A GLU 244 ? OE2 ? A GLU 25 OE2 22 1 Y 1 A GLN 246 ? CB ? A GLN 27 CB 23 1 Y 1 A GLN 246 ? CG ? A GLN 27 CG 24 1 Y 1 A GLN 246 ? CD ? A GLN 27 CD 25 1 Y 1 A GLN 246 ? OE1 ? A GLN 27 OE1 26 1 Y 1 A GLN 246 ? NE2 ? A GLN 27 NE2 27 1 Y 1 A ARG 248 ? CB ? A ARG 29 CB 28 1 Y 1 A ARG 248 ? CG ? A ARG 29 CG 29 1 Y 1 A ARG 248 ? CD ? A ARG 29 CD 30 1 Y 1 A ARG 248 ? NE ? A ARG 29 NE 31 1 Y 1 A ARG 248 ? CZ ? A ARG 29 CZ 32 1 Y 1 A ARG 248 ? NH1 ? A ARG 29 NH1 33 1 Y 1 A ARG 248 ? NH2 ? A ARG 29 NH2 34 1 Y 1 A GLU 300 ? CG ? A GLU 81 CG 35 1 Y 1 A GLU 300 ? CD ? A GLU 81 CD 36 1 Y 1 A GLU 300 ? OE1 ? A GLU 81 OE1 37 1 Y 1 A GLU 300 ? OE2 ? A GLU 81 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 220 ? A GLU 1 2 1 Y 1 A ILE 221 ? A ILE 2 3 1 Y 1 A LYS 222 ? A LYS 3 4 1 Y 1 A ARG 223 ? A ARG 4 5 1 Y 1 A GLU 224 ? A GLU 5 6 1 Y 1 A TYR 225 ? A TYR 6 7 1 Y 1 A LYS 226 ? A LYS 7 8 1 Y 1 A GLU 227 ? A GLU 8 9 1 Y 1 A MET 228 ? A MET 9 10 1 Y 1 A GLU 229 ? A GLU 10 11 1 Y 1 A GLY 230 ? A GLY 11 12 1 Y 1 A SER 231 ? A SER 12 13 1 Y 1 A PRO 232 ? A PRO 13 14 1 Y 1 A GLU 233 ? A GLU 14 15 1 Y 1 A ILE 234 ? A ILE 15 16 1 Y 1 A LYS 235 ? A LYS 16 17 1 Y 1 A SER 236 ? A SER 17 18 1 Y 1 A LYS 237 ? A LYS 18 19 1 Y 1 A ARG 238 ? A ARG 19 20 1 Y 1 A ARG 239 ? A ARG 20 21 1 Y 1 A TRP 340 ? A TRP 121 22 1 Y 1 A LEU 341 ? A LEU 122 23 1 Y 1 A GLU 342 ? A GLU 123 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #