HEADER STRUCTURAL PROTEIN 25-OCT-06 2JMA TITLE R21A SPC-SH3:P41 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECTRIN ALPHA CHAIN, BRAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN, RESIDUES 965-1025; COMPND 5 SYNONYM: SPECTRIN, NON-ERYTHROID ALPHA CHAIN, FODRIN ALPHA CHAIN, COMPND 6 ALPHA SPECTRIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: P41 PEPTIDE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: SPTAN1, SPTA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS SH3 DOMAIN, P41-BOUND, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.A.J.VAN NULAND,S.CASARES,E.AB,H.ESHUIS,O.LOPEZ-MAYORGA,F.CONEJERO- AUTHOR 2 LARA REVDAT 4 20-DEC-23 2JMA 1 REMARK REVDAT 3 20-OCT-21 2JMA 1 SOURCE REMARK SEQADV LINK REVDAT 2 24-FEB-09 2JMA 1 VERSN REVDAT 1 24-APR-07 2JMA 0 JRNL AUTH S.CASARES,E.AB,H.ESHUIS,O.LOPEZ-MAYORGA,N.A.J.VAN NULAND, JRNL AUTH 2 F.CONEJERO-LARA JRNL TITL THE HIGH-RESOLUTION NMR STRUCTURE OF THE R21A SPC-SH3:P41 JRNL TITL 2 COMPLEX: UNDERSTANDING THE DETERMINANTS OF BINDING AFFINITY JRNL TITL 3 BY COMPARISON WITH ABL-SH3 JRNL REF BMC STRUCT.BIOL. V. 7 22 2007 JRNL REFN ESSN 1472-6807 JRNL PMID 17407569 JRNL DOI 10.1186/1472-6807-7-22 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, ARIA REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRVIEW), LINGE, O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL REFINEMENT IN EXPLICIT SOLVENT REMARK 3 WITHIN ARIA REMARK 4 REMARK 4 2JMA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000100010. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 2 MM R21A SPC-SH3, 5.2 MM P41, REMARK 210 90 % H2O, 10 % D2O, 20 MM D5- REMARK 210 GLYCINE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, ARIA, HADDOCK 1.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 INTERACTION ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 46 H ASP A 48 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 61.24 -117.43 REMARK 500 1 ASN A 47 -58.02 60.21 REMARK 500 1 ASP A 48 -9.86 -155.53 REMARK 500 2 ASP A 2 76.08 -102.96 REMARK 500 2 ASN A 47 -56.47 59.58 REMARK 500 2 ASP A 48 -8.40 -161.37 REMARK 500 2 SER B 3 31.43 -82.76 REMARK 500 3 LYS A 6 -151.35 172.94 REMARK 500 3 ASN A 47 -55.94 60.39 REMARK 500 3 ASP A 48 -7.12 -161.44 REMARK 500 3 SER B 3 46.25 -96.43 REMARK 500 4 LYS A 6 -151.88 169.49 REMARK 500 4 SER A 36 36.15 -143.50 REMARK 500 4 ASN A 47 -55.62 63.27 REMARK 500 4 ASP A 48 -9.81 -166.17 REMARK 500 4 SER B 3 38.54 -88.64 REMARK 500 5 ASN A 47 -61.89 58.33 REMARK 500 5 ASP A 48 -10.06 -151.70 REMARK 500 5 SER B 3 38.98 -86.06 REMARK 500 6 GLU A 3 59.08 -150.28 REMARK 500 6 LYS A 6 -149.69 173.98 REMARK 500 6 ASN A 47 -56.65 61.80 REMARK 500 6 ASP A 48 -7.37 -165.65 REMARK 500 6 SER B 3 55.30 -94.71 REMARK 500 7 LYS A 6 -152.97 171.91 REMARK 500 7 ASN A 47 -56.28 57.53 REMARK 500 7 ASP A 48 -11.54 -154.72 REMARK 500 7 SER B 3 40.77 -92.00 REMARK 500 8 GLU A 3 -9.89 -59.78 REMARK 500 8 ASN A 47 -65.07 57.00 REMARK 500 8 ASP A 48 -5.98 -150.36 REMARK 500 8 SER B 3 49.43 -100.15 REMARK 500 9 GLU A 3 58.24 -151.38 REMARK 500 9 LYS A 6 -152.31 173.36 REMARK 500 9 SER A 36 35.57 -142.01 REMARK 500 9 ASN A 47 -54.55 60.47 REMARK 500 9 ASP A 48 -11.46 -167.06 REMARK 500 9 SER B 3 53.53 -93.26 REMARK 500 10 ASN A 47 -56.11 61.32 REMARK 500 10 ASP A 48 -8.48 -165.25 REMARK 500 10 SER B 3 51.60 -105.84 REMARK 500 11 LYS A 6 -143.89 171.53 REMARK 500 11 ASN A 47 -57.23 63.00 REMARK 500 11 ASP A 48 -5.85 -164.06 REMARK 500 11 SER B 3 51.86 -100.06 REMARK 500 12 ASN A 47 -56.24 60.21 REMARK 500 12 ASP A 48 -8.42 -162.09 REMARK 500 13 GLU A 3 55.05 -144.70 REMARK 500 13 LYS A 6 -152.92 172.84 REMARK 500 13 ASN A 47 -55.78 62.40 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JM8 RELATED DB: PDB REMARK 900 R21A SPC-SH3 FREE REMARK 900 RELATED ID: 2JM9 RELATED DB: PDB REMARK 900 R21A SPC-SH3 BOUND REMARK 900 RELATED ID: 7305 RELATED DB: BMRB REMARK 900 R21A SPC-SH3 FREE REMARK 900 RELATED ID: 7306 RELATED DB: BMRB REMARK 900 R21A SPC-SH3 BOUND DBREF 2JMA A 2 62 UNP P07751 SPTA2_CHICK 965 1025 DBREF 2JMA B 0 10 PDB 2JMA 2JMA 0 10 SEQADV 2JMA MET A 1 UNP P07751 CLONING ARTIFACT SEQADV 2JMA ALA A 21 UNP P07751 ARG 984 ENGINEERED MUTATION SEQRES 1 A 62 MET ASP GLU THR GLY LYS GLU LEU VAL LEU ALA LEU TYR SEQRES 2 A 62 ASP TYR GLN GLU LYS SER PRO ALA GLU VAL THR MET LYS SEQRES 3 A 62 LYS GLY ASP ILE LEU THR LEU LEU ASN SER THR ASN LYS SEQRES 4 A 62 ASP TRP TRP LYS VAL GLU VAL ASN ASP ARG GLN GLY PHE SEQRES 5 A 62 VAL PRO ALA ALA TYR VAL LYS LYS LEU ASP SEQRES 1 B 11 ACE ALA PRO SER TYR SER PRO PRO PRO PRO PRO HET ACE B 0 6 HETNAM ACE ACETYL GROUP FORMUL 2 ACE C2 H4 O SHEET 1 A 5 ARG A 49 PRO A 54 0 SHEET 2 A 5 TRP A 41 VAL A 46 -1 N TRP A 42 O VAL A 53 SHEET 3 A 5 ILE A 30 ASN A 35 -1 N LEU A 34 O LYS A 43 SHEET 4 A 5 LEU A 8 ALA A 11 -1 N VAL A 9 O LEU A 31 SHEET 5 A 5 VAL A 58 LYS A 60 -1 O LYS A 59 N LEU A 10 LINK C ACE B 0 N ALA B 1 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1