HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-DEC-06 2JNA TITLE SOLUTION NMR STRUCTURE OF SALMONELLA TYPHIMURIUM LT2 SECRETED PROTEIN TITLE 2 STM0082: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET STR109 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SECRETED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: STM0082; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET21 KEYWDS GFT-NMR, HOMODIMER, PSI-2, ALPHA+BETA, PUTATIVE SECRETED PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,D.PARISH,G.LIU,D.SUKUMARAN,M.JIANG,K.CUNNINGHAM,L.MA, AUTHOR 2 R.XIAO,B.ROST,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 4 20-DEC-23 2JNA 1 SEQADV REVDAT 3 13-JUL-11 2JNA 1 VERSN REVDAT 2 24-FEB-09 2JNA 1 VERSN REVDAT 1 06-FEB-07 2JNA 0 JRNL AUTH A.ELETSKY,D.PARISH,G.LIU,D.SUKUMARAN,M.JIANG,K.CUNNINGHAM, JRNL AUTH 2 L.MA,R.XIAO,B.ROST,G.T.MONTELIONE,T.SZYPERSKI, JRNL AUTH 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) JRNL TITL SOLUTION NMR STRUCTURE OF SALMONELLA TYPHIMURIUM LT2 JRNL TITL 2 SECRETED PROTEIN STM0082: NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET STR109 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1, CNS 1.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JNA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000100046. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 115 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.38 MM [U-100% 13C, U-100% 15N] REMARK 210 STR109 SUBUNIT, 100 MM SODIUM REMARK 210 CHLORIDE, 100 MM DTT, 5 MM CACL2, REMARK 210 20 MM MES, 0.02 % SODIUM AZIDE, REMARK 210 95% H2O, 5% D2O; 1.8 MM [U-5% REMARK 210 13C, U-100% 15N] STR109 SUBUNIT, REMARK 210 100 MM SODIUM CHLORIDE, 100 MM REMARK 210 DTT, 5 MM CACL2, 20 MM MES, 0.02 REMARK 210 % SODIUM AZIDE, 95% H2O, 5% D2O; REMARK 210 1.2 MM [U-100% 13C, U-100% 15N] / REMARK 210 NAT. AB. MIXTURE STR109 SUBUNIT, REMARK 210 100 MM SODIUM CHLORIDE, 100 MM REMARK 210 DTT, 5 MM CACL2, 20 MM MES, 0.02 REMARK 210 % SODIUM AZIDE, 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C CT-HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-13C CT-HSQC REMARK 210 AROMATIC; 3D HNCO; GFT (4,3)D REMARK 210 CABCA(CO)NHN; GFT (4,3)D REMARK 210 HNNCABCA; GFT (4,3)D HABCAB(CO) REMARK 210 NHN; GFT (4,3)D HCCH-COSY REMARK 210 ALIPHATIC; GFT (4,3)D HCCH-COSY REMARK 210 AROMATIC; 3D 1H-13C/15N SIMNOESY; REMARK 210 3D 1H-13C X-FILTERED NOESY; 2D REMARK 210 1H-13C 28MS CT-HSQC; 2D 1H-13C REMARK 210 56MS CT-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, XEASY 1.3.13, REMARK 210 AUTOASSIGN 1.15.1, CARA 1.5.5, REMARK 210 PROSA 6.0.2, CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, EXPLICIT REMARK 210 WATER BATH REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 HIS A 104 O REMARK 470 HIS B 304 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 57 OE1 GLU B 298 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 7 107.88 68.39 REMARK 500 1 THR A 13 115.61 73.62 REMARK 500 1 PHE A 17 -80.45 -108.17 REMARK 500 1 ALA A 22 108.31 70.65 REMARK 500 1 GLU A 23 -138.87 -147.00 REMARK 500 1 GLN A 24 156.73 72.73 REMARK 500 1 SER A 26 -166.79 -100.29 REMARK 500 1 LYS A 34 76.43 59.54 REMARK 500 1 ALA A 76 101.22 -171.89 REMARK 500 1 THR A 95 -26.37 -175.26 REMARK 500 1 LYS A 96 -0.83 73.49 REMARK 500 1 HIS A 102 125.77 72.69 REMARK 500 1 HIS A 103 -42.29 -140.84 REMARK 500 1 LYS B 202 177.13 66.56 REMARK 500 1 ARG B 204 95.41 62.09 REMARK 500 1 ILE B 206 109.04 68.74 REMARK 500 1 ALA B 208 30.84 -82.96 REMARK 500 1 PHE B 217 -99.38 41.54 REMARK 500 1 THR B 219 87.81 39.50 REMARK 500 1 GLU B 223 101.83 -172.88 REMARK 500 1 LYS B 234 80.81 64.34 REMARK 500 1 SER B 244 74.99 -153.07 REMARK 500 1 ASP B 293 -95.16 -57.61 REMARK 500 1 LEU B 297 107.58 71.76 REMARK 500 1 HIS B 299 87.76 71.90 REMARK 500 1 HIS B 300 37.17 -78.72 REMARK 500 1 HIS B 302 18.72 -153.71 REMARK 500 2 ALA A 9 69.89 60.16 REMARK 500 2 ALA A 12 72.59 55.07 REMARK 500 2 ALA A 22 86.89 64.04 REMARK 500 2 LYS A 34 70.56 59.31 REMARK 500 2 SER A 44 30.79 -141.23 REMARK 500 2 ALA A 76 117.90 -161.82 REMARK 500 2 LEU B 210 -169.25 66.71 REMARK 500 2 THR B 213 -68.91 -148.92 REMARK 500 2 ALA B 215 -169.29 -101.27 REMARK 500 2 SER B 216 -81.40 -157.16 REMARK 500 2 LEU B 220 -74.52 -143.27 REMARK 500 2 ALA B 221 -78.47 -144.95 REMARK 500 2 ALA B 222 92.69 71.03 REMARK 500 2 LYS B 234 77.55 59.79 REMARK 500 2 SER B 244 88.77 -153.35 REMARK 500 2 THR B 295 -41.07 -174.93 REMARK 500 2 HIS B 301 143.43 -170.59 REMARK 500 3 LYS A 2 -84.28 -83.51 REMARK 500 3 ALA A 7 -73.35 -161.58 REMARK 500 3 ALA A 8 -35.87 70.10 REMARK 500 3 LYS A 34 79.01 56.64 REMARK 500 3 SER A 44 86.70 -150.38 REMARK 500 3 ALA A 94 21.77 -74.85 REMARK 500 REMARK 500 THIS ENTRY HAS 486 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: STR109 RELATED DB: TARGETDB DBREF 2JNA A 1 96 UNP Q7CR88 Q7CR88_SALTY 1 96 DBREF 2JNA B 201 296 UNP Q7CR88 Q7CR88_SALTY 1 96 SEQADV 2JNA LEU A 97 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA GLU A 98 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA HIS A 99 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA HIS A 100 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA HIS A 101 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA HIS A 102 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA HIS A 103 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA HIS A 104 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA LEU B 297 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA GLU B 298 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA HIS B 299 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA HIS B 300 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA HIS B 301 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA HIS B 302 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA HIS B 303 UNP Q7CR88 EXPRESSION TAG SEQADV 2JNA HIS B 304 UNP Q7CR88 EXPRESSION TAG SEQRES 1 A 104 MET LYS LYS ARG ILE ILE ALA ALA ALA LEU LEU ALA THR SEQRES 2 A 104 VAL ALA SER PHE SER THR LEU ALA ALA GLU GLN VAL SER SEQRES 3 A 104 LYS GLN GLU ILE SER HIS PHE LYS LEU VAL LYS VAL GLY SEQRES 4 A 104 THR ILE ASN VAL SER GLN SER GLY GLY GLN ILE SER SER SEQRES 5 A 104 PRO SER ASP LEU ARG GLU LYS LEU SER GLU LEU ALA ASP SEQRES 6 A 104 ALA LYS GLY GLY LYS TYR TYR HIS ILE ILE ALA ALA ARG SEQRES 7 A 104 GLU HIS GLY PRO ASN PHE GLU ALA VAL ALA GLU VAL TYR SEQRES 8 A 104 ASN ASP ALA THR LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 104 MET LYS LYS ARG ILE ILE ALA ALA ALA LEU LEU ALA THR SEQRES 2 B 104 VAL ALA SER PHE SER THR LEU ALA ALA GLU GLN VAL SER SEQRES 3 B 104 LYS GLN GLU ILE SER HIS PHE LYS LEU VAL LYS VAL GLY SEQRES 4 B 104 THR ILE ASN VAL SER GLN SER GLY GLY GLN ILE SER SER SEQRES 5 B 104 PRO SER ASP LEU ARG GLU LYS LEU SER GLU LEU ALA ASP SEQRES 6 B 104 ALA LYS GLY GLY LYS TYR TYR HIS ILE ILE ALA ALA ARG SEQRES 7 B 104 GLU HIS GLY PRO ASN PHE GLU ALA VAL ALA GLU VAL TYR SEQRES 8 B 104 ASN ASP ALA THR LYS LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 26 LYS A 34 1 9 HELIX 2 2 SER A 52 GLY A 68 1 17 HELIX 3 3 SER B 226 LYS B 234 1 9 HELIX 4 4 GLY B 248 ILE B 250 5 3 HELIX 5 5 SER B 252 GLY B 268 1 17 SHEET 1 A 3 VAL A 36 SER A 46 0 SHEET 2 A 3 ASN A 83 ASN A 92 -1 O ALA A 86 N VAL A 43 SHEET 3 A 3 TYR A 71 HIS A 80 -1 N ALA A 76 O VAL A 87 SHEET 1 B 3 VAL B 236 SER B 246 0 SHEET 2 B 3 ASN B 283 ASN B 292 -1 O ALA B 286 N VAL B 243 SHEET 3 B 3 TYR B 271 GLU B 279 -1 N HIS B 273 O GLU B 289 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1