HEADER GENE REGULATION 23-JAN-07 2JNG TITLE SOLUTION STRUCTURE OF THE CUL7-CPH DOMAIN FROM HOMO SAPIENS; NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET HT1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CULLIN-7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 360-460; COMPND 5 SYNONYM: CUL-7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CUL7, KIAA0076; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 15B KEYWDS P53 BINDING DOMAIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, GENE KEYWDS 3 REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,L.KAUSTOV,J.LUKIN,S.DUAN,C.H.ARROWSMITH,NORTHEAST STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (NESG) REVDAT 5 20-DEC-23 2JNG 1 REMARK REVDAT 4 09-MAR-22 2JNG 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JNG 1 VERSN REVDAT 2 08-MAY-07 2JNG 1 JRNL REVDAT 1 27-FEB-07 2JNG 0 JRNL AUTH L.KAUSTOV,J.LUKIN,A.LEMAK,S.DUAN,M.HO,R.DOHERTY,L.Z.PENN, JRNL AUTH 2 C.H.ARROWSMITH JRNL TITL THE CONSERVED CPH DOMAINS OF CUL7 AND PARC ARE JRNL TITL 2 PROTEIN-PROTEIN INTERACTION MODULES THAT BIND THE JRNL TITL 3 TETRAMERIZATION DOMAIN OF P53 JRNL REF J.BIOL.CHEM. V. 282 11300 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17298945 JRNL DOI 10.1074/JBC.M611297200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JNG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000100052. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 250 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 25 MM TRIS, 250 MM SODIUM REMARK 210 CHLORIDE, 55 MM H2O, 0.5 MM PMSF, REMARK 210 0.5 MM TCEP, 1 MM BENZAMIDINE, REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY 3.106, TALOS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING A COMBINATION OF NOE REMARK 210 AND HN RESIDUAL DIPOLAR COUPLING DATA. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 ASP A 81 REMARK 465 ILE A 82 REMARK 465 GLU A 83 REMARK 465 ASP A 84 REMARK 465 MET A 85 REMARK 465 VAL A 86 REMARK 465 GLU A 87 REMARK 465 ALA A 88 REMARK 465 ASP A 89 REMARK 465 GLU A 90 REMARK 465 TYR A 91 REMARK 465 GLN A 92 REMARK 465 GLY A 93 REMARK 465 ALA A 94 REMARK 465 VAL A 95 REMARK 465 ALA A 96 REMARK 465 SER A 97 REMARK 465 ARG A 98 REMARK 465 VAL A 99 REMARK 465 LEU A 100 REMARK 465 GLY A 101 REMARK 465 ARG A 102 REMARK 465 ALA A 103 REMARK 465 LEU A 104 REMARK 465 PRO A 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 41 HG SER A 61 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 14.56 -68.36 REMARK 500 1 GLU A 35 -124.66 60.85 REMARK 500 1 VAL A 68 -155.81 -104.23 REMARK 500 2 GLU A 35 -30.85 69.47 REMARK 500 2 GLU A 36 -38.24 -163.46 REMARK 500 2 LEU A 76 -66.94 -102.16 REMARK 500 3 GLU A 35 -113.43 59.74 REMARK 500 3 ASN A 50 -94.06 58.19 REMARK 500 3 PHE A 78 138.34 -176.24 REMARK 500 4 LEU A 22 96.56 -68.34 REMARK 500 4 GLU A 35 -1.04 57.72 REMARK 500 4 GLU A 36 -42.96 177.36 REMARK 500 4 PHE A 78 19.37 -142.09 REMARK 500 5 GLU A 36 -41.08 -173.45 REMARK 500 6 SER A 6 1.28 -69.48 REMARK 500 6 GLU A 7 -70.14 -74.50 REMARK 500 6 PHE A 8 -158.49 53.86 REMARK 500 6 PRO A 24 101.65 -49.62 REMARK 500 6 GLU A 35 -71.80 -39.14 REMARK 500 6 ASN A 50 -106.73 46.69 REMARK 500 7 GLU A 35 -112.07 59.46 REMARK 500 7 GLU A 79 19.47 57.73 REMARK 500 8 GLU A 35 -26.22 73.53 REMARK 500 8 GLU A 36 -38.50 -175.53 REMARK 500 8 PHE A 78 -94.22 -138.25 REMARK 500 8 GLU A 79 -63.46 65.75 REMARK 500 9 PHE A 8 -178.18 -58.72 REMARK 500 9 GLU A 35 -26.11 69.27 REMARK 500 9 GLU A 36 -40.13 -167.48 REMARK 500 9 ASN A 50 -39.60 72.66 REMARK 500 9 VAL A 68 -155.02 -111.87 REMARK 500 9 PHE A 78 -36.69 -166.65 REMARK 500 10 LEU A 76 -71.36 -101.27 REMARK 500 10 GLU A 79 -58.84 72.33 REMARK 500 11 GLU A 35 -15.18 69.99 REMARK 500 11 GLU A 36 -31.38 172.80 REMARK 500 11 ASN A 50 -97.71 34.08 REMARK 500 11 LEU A 76 42.08 -109.85 REMARK 500 12 PRO A 24 107.92 -50.58 REMARK 500 12 TYR A 34 108.51 -160.95 REMARK 500 12 GLU A 35 -23.72 67.44 REMARK 500 12 GLU A 36 -47.23 -169.07 REMARK 500 12 GLN A 47 170.77 178.86 REMARK 500 12 ASN A 50 -9.22 65.41 REMARK 500 12 PRO A 54 105.47 -58.57 REMARK 500 12 VAL A 68 -156.70 -106.47 REMARK 500 13 GLU A 35 -112.25 55.84 REMARK 500 13 ASN A 50 31.48 -76.15 REMARK 500 13 LEU A 76 78.34 -114.15 REMARK 500 14 GLU A 35 -12.30 63.43 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HT1 RELATED DB: TARGETDB DBREF 2JNG A 5 105 UNP Q14999 CUL7_HUMAN 360 460 SEQADV 2JNG GLY A 1 UNP Q14999 CLONING ARTIFACT SEQADV 2JNG SER A 2 UNP Q14999 CLONING ARTIFACT SEQADV 2JNG HIS A 3 UNP Q14999 CLONING ARTIFACT SEQADV 2JNG MET A 4 UNP Q14999 CLONING ARTIFACT SEQRES 1 A 105 GLY SER HIS MET ARG SER GLU PHE ALA SER GLY ASN THR SEQRES 2 A 105 TYR ALA LEU TYR VAL ARG ASP THR LEU GLN PRO GLY MET SEQRES 3 A 105 ARG VAL ARG MET LEU ASP ASP TYR GLU GLU ILE SER ALA SEQRES 4 A 105 GLY ASP GLU GLY GLU PHE ARG GLN SER ASN ASN GLY VAL SEQRES 5 A 105 PRO PRO VAL GLN VAL PHE TRP GLU SER THR GLY ARG THR SEQRES 6 A 105 TYR TRP VAL HIS TRP HIS MET LEU GLU ILE LEU GLY PHE SEQRES 7 A 105 GLU GLU ASP ILE GLU ASP MET VAL GLU ALA ASP GLU TYR SEQRES 8 A 105 GLN GLY ALA VAL ALA SER ARG VAL LEU GLY ARG ALA LEU SEQRES 9 A 105 PRO HELIX 1 1 MET A 4 PHE A 8 5 5 HELIX 2 2 GLY A 11 LEU A 22 1 12 SHEET 1 A 5 ARG A 64 HIS A 69 0 SHEET 2 A 5 PRO A 54 TRP A 59 -1 N VAL A 57 O TYR A 66 SHEET 3 A 5 GLU A 42 SER A 48 -1 N GLU A 44 O PHE A 58 SHEET 4 A 5 ARG A 27 MET A 30 -1 N VAL A 28 O GLY A 43 SHEET 5 A 5 LEU A 73 ILE A 75 -1 O GLU A 74 N ARG A 29 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1