HEADER UNKNOWN FUNCTION 31-JAN-07 2JNQ TITLE SOLUTION STRUCTURE OF A KLBA INTEIN PRECURSOR FROM METHANOCOCCUS TITLE 2 JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN MJ0781; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MJA KLBA INTEIN, RESIDUES 1-180; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMJAKLBA KEYWDS PROTEIN, UNKNOWN FUNCTION EXPDTA SOLUTION NMR AUTHOR M.A.JOHNSON,M.W.SOUTHWORTH,T.HERRMANN,L.BRACE,F.B.PERLER,K.A.WUTHRICH REVDAT 4 20-DEC-23 2JNQ 1 REMARK REVDAT 3 20-OCT-21 2JNQ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JNQ 1 VERSN REVDAT 1 10-JUL-07 2JNQ 0 JRNL AUTH M.A.JOHNSON,M.W.SOUTHWORTH,T.HERRMANN,L.BRACE,F.B.PERLER, JRNL AUTH 2 K.WUTHRICH JRNL TITL NMR STRUCTURE OF A KLBA INTEIN PRECURSOR FROM METHANOCOCCUS JRNL TITL 2 JANNASCHII JRNL REF PROTEIN SCI. V. 16 1316 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17586768 JRNL DOI 10.1110/PS.072816707 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ATNOS/CANDID 1.2, OPAL 1.2 REMARK 3 AUTHORS : HERRMANN, GUNTERT AND WUTHRICH (ATNOS/CANDID), REMARK 3 LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000100062. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 5.3 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-98% 15N] KLBA INTEIN REMARK 210 PRECURSOR, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 2 MM SODIUM AZIDE, 90% REMARK 210 H2O, 10% D2O; 2 MM [U-98% 13C, U- REMARK 210 98% 15N] KLBA INTEIN PRECURSOR, REMARK 210 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 2 MM SODIUM REMARK 210 AZIDE, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 1.0.3 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 95 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 5 -174.21 60.96 REMARK 500 ASP A 6 84.52 58.44 REMARK 500 TYR A 16 76.89 47.60 REMARK 500 SER A 18 0.24 -61.45 REMARK 500 ILE A 22 66.99 35.74 REMARK 500 TYR A 36 43.10 -90.24 REMARK 500 ILE A 40 95.77 -59.44 REMARK 500 ASN A 45 2.63 -68.86 REMARK 500 PHE A 47 -100.21 -86.54 REMARK 500 ASN A 56 -6.35 61.57 REMARK 500 SER A 61 -166.47 -107.47 REMARK 500 SER A 66 10.40 -149.04 REMARK 500 ASN A 93 20.11 -72.34 REMARK 500 ARG A 94 27.14 49.11 REMARK 500 ASP A 102 39.37 -91.69 REMARK 500 LYS A 109 78.13 -109.20 REMARK 500 VAL A 123 -1.44 -58.96 REMARK 500 LYS A 131 -145.60 -125.20 REMARK 500 ASN A 132 -82.04 -59.94 REMARK 500 ILE A 141 -88.55 29.34 REMARK 500 ASN A 149 24.32 -146.79 REMARK 500 ASN A 168 -85.13 68.33 REMARK 500 SER A 176 -149.68 -149.25 REMARK 500 SER A 177 -106.32 -149.39 REMARK 500 THR A 179 -172.03 68.23 REMARK 500 LEU A 180 81.65 -67.64 REMARK 500 HIS A 183 92.68 31.73 REMARK 500 HIS A 185 -128.22 -128.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 71 LYS A 72 140.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15061 RELATED DB: BMRB REMARK 900 RELATED ID: 2JMZ RELATED DB: PDB REMARK 900 ENSEMBLE OF CONFORMERS DBREF 2JNQ A 1 180 UNP Q58191 Y781_METJA 398 577 SEQADV 2JNQ ALA A 175 UNP Q58191 ASN 572 ENGINEERED MUTATION SEQADV 2JNQ SER A 176 UNP Q58191 CYS 573 ENGINEERED MUTATION SEQADV 2JNQ HIS A 181 UNP Q58191 EXPRESSION TAG SEQADV 2JNQ HIS A 182 UNP Q58191 EXPRESSION TAG SEQADV 2JNQ HIS A 183 UNP Q58191 EXPRESSION TAG SEQADV 2JNQ HIS A 184 UNP Q58191 EXPRESSION TAG SEQADV 2JNQ HIS A 185 UNP Q58191 EXPRESSION TAG SEQADV 2JNQ HIS A 186 UNP Q58191 EXPRESSION TAG SEQRES 1 A 186 MET ASN THR GLY HIS ASP GLY ALA LEU ALA TYR ASP GLU SEQRES 2 A 186 PRO ILE TYR LEU SER ASP GLY ASN ILE ILE ASN ILE GLY SEQRES 3 A 186 GLU PHE VAL ASP LYS PHE PHE LYS LYS TYR LYS ASN SER SEQRES 4 A 186 ILE LYS LYS GLU ASP ASN GLY PHE GLY TRP ILE ASP ILE SEQRES 5 A 186 GLY ASN GLU ASN ILE TYR ILE LYS SER PHE ASN LYS LEU SEQRES 6 A 186 SER LEU ILE ILE GLU ASP LYS ARG ILE LEU ARG VAL TRP SEQRES 7 A 186 ARG LYS LYS TYR SER GLY LYS LEU ILE LYS ILE THR THR SEQRES 8 A 186 LYS ASN ARG ARG GLU ILE THR LEU THR HIS ASP HIS PRO SEQRES 9 A 186 VAL TYR ILE SER LYS THR GLY GLU VAL LEU GLU ILE ASN SEQRES 10 A 186 ALA GLU MET VAL LYS VAL GLY ASP TYR ILE TYR ILE PRO SEQRES 11 A 186 LYS ASN ASN THR ILE ASN LEU ASP GLU VAL ILE LYS VAL SEQRES 12 A 186 GLU THR VAL ASP TYR ASN GLY HIS ILE TYR ASP LEU THR SEQRES 13 A 186 VAL GLU ASP ASN HIS THR TYR ILE ALA GLY LYS ASN GLU SEQRES 14 A 186 GLY PHE ALA VAL SER ALA SER SER GLY THR LEU HIS HIS SEQRES 15 A 186 HIS HIS HIS HIS HELIX 1 1 ASN A 24 TYR A 36 1 13 HELIX 2 2 GLU A 119 VAL A 121 5 3 SHEET 1 A 4 LEU A 9 ALA A 10 0 SHEET 2 A 4 ILE A 152 THR A 156 -1 O TYR A 153 N LEU A 9 SHEET 3 A 4 ARG A 76 LYS A 80 -1 N TRP A 78 O ASP A 154 SHEET 4 A 4 TRP A 49 ASP A 51 -1 N ILE A 50 O VAL A 77 SHEET 1 B 2 TYR A 58 LYS A 60 0 SHEET 2 B 2 ASP A 71 ARG A 73 -1 O LYS A 72 N ILE A 59 SHEET 1 C 2 GLY A 84 ILE A 87 0 SHEET 2 C 2 THR A 145 TYR A 148 -1 O TYR A 148 N GLY A 84 SHEET 1 D 2 PRO A 104 LYS A 109 0 SHEET 2 D 2 GLU A 112 ASN A 117 -1 O GLU A 112 N LYS A 109 SHEET 1 E 2 TYR A 126 PRO A 130 0 SHEET 2 E 2 ILE A 135 GLU A 139 -1 O ASN A 136 N ILE A 129 SHEET 1 F 2 THR A 162 ALA A 165 0 SHEET 2 F 2 PHE A 171 SER A 174 -1 O PHE A 171 N ALA A 165 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000