HEADER METAL TRANSPORT 06-FEB-07 2JNV TITLE SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF NIFU-LIKE PROTEIN FROM TITLE 2 ORYZA SATIVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIFU-LIKE PROTEIN 1, CHLOROPLAST; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 73-153; COMPND 5 SYNONYM: OSNIFU1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 GENE: NIFU1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET23D KEYWDS IRON-SULFUR CLUSTER BINDING, PROGRAM FOR RICE GENOME RESERCH, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, METAL TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SAIO,K.OGURA,H.KUMETA,M.YOKOCHI,S.KATOH,E.KATOH,F.INAGAKI,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 20-DEC-23 2JNV 1 REMARK REVDAT 3 09-MAR-22 2JNV 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JNV 1 VERSN REVDAT 1 18-DEC-07 2JNV 0 JRNL AUTH T.SAIO,H.KUMETA,K.OGURA,M.YOKOCHI,M.ASAYAMA,S.KATOH,E.KATOH, JRNL AUTH 2 K.TESHIMA,F.INAGAKI JRNL TITL THE COOPERATIVE ROLE OF OSCNFU-1A DOMAIN I AND DOMAIN II IN JRNL TITL 2 THE IRON SULPHUR CLUSTER TRANSFER PROCESS AS REVEALED BY NMR JRNL REF J.BIOCHEM.(TOKYO) V. 142 113 2007 JRNL REFN ISSN 0021-924X JRNL PMID 17545250 JRNL DOI 10.1093/JB/MVM120 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JNV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000100067. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.0; 7.5 REMARK 210 IONIC STRENGTH : 150; 150 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE, 150 MM REMARK 210 SODIUM CHLORIDE, 0.02 W/V DSS, REMARK 210 10 % D2O, 10 MM DTT, 0.6 MM [U- REMARK 210 98% 13C; U-98% 15N] OSNIFU1A REMARK 210 DOMAIN I (73-153), 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HN(CA)HA; 3D HBHA(CO)NH; 3D CCH- REMARK 210 TOCSY; 3D HCCH-TOCSY; 2D REMARK 210 HBCBCGCDHD; 2D HBCBCGCDCEHE; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : OLIVIA 1.13.1, VNMR 6.1C, REMARK 210 NMRPIPE 23 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 154 REMARK 465 GLU A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 HIS A 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 99 141.70 -175.35 REMARK 500 1 HIS A 101 -73.49 -77.13 REMARK 500 1 ILE A 138 75.71 -113.12 REMARK 500 1 PRO A 146 -171.00 -69.74 REMARK 500 1 THR A 152 73.14 -110.51 REMARK 500 2 ASP A 97 -176.28 -179.33 REMARK 500 2 ALA A 99 137.74 -171.96 REMARK 500 2 ALA A 115 145.49 -178.40 REMARK 500 2 CYS A 116 -75.34 -72.41 REMARK 500 2 CYS A 119 68.67 -166.11 REMARK 500 2 ILE A 138 76.47 -112.78 REMARK 500 2 PRO A 146 -170.87 -69.80 REMARK 500 3 ASP A 97 -176.26 -171.94 REMARK 500 3 ALA A 99 136.04 -172.88 REMARK 500 3 ILE A 138 75.12 -113.31 REMARK 500 3 PRO A 146 -170.84 -69.77 REMARK 500 3 ASP A 149 -74.49 -53.72 REMARK 500 4 TYR A 90 -64.57 -96.29 REMARK 500 4 ASP A 97 142.37 -170.79 REMARK 500 4 ALA A 99 146.14 -173.71 REMARK 500 4 HIS A 101 -71.34 -93.37 REMARK 500 4 SER A 118 -71.05 -53.46 REMARK 500 4 PRO A 120 80.03 -69.75 REMARK 500 4 ILE A 138 76.84 -112.39 REMARK 500 4 PRO A 146 -172.41 -69.81 REMARK 500 4 ASP A 149 87.80 -68.03 REMARK 500 5 LEU A 91 -64.98 -101.15 REMARK 500 5 ASP A 97 -172.87 -179.50 REMARK 500 5 ALA A 99 122.77 -177.36 REMARK 500 5 HIS A 101 -73.54 -93.41 REMARK 500 5 ALA A 104 -169.50 -77.36 REMARK 500 5 CYS A 116 117.04 -175.93 REMARK 500 5 SER A 121 40.71 -94.05 REMARK 500 5 ILE A 138 76.34 -112.93 REMARK 500 5 PRO A 146 -171.03 -69.72 REMARK 500 5 ASP A 149 -75.40 -51.76 REMARK 500 6 ALA A 99 127.61 -175.12 REMARK 500 6 CYS A 119 73.59 -119.53 REMARK 500 6 ILE A 138 75.28 -113.18 REMARK 500 7 TYR A 90 -63.30 -94.63 REMARK 500 7 ASP A 97 127.36 -174.77 REMARK 500 7 ALA A 99 117.78 -173.37 REMARK 500 7 HIS A 101 -74.09 -93.69 REMARK 500 7 ALA A 115 -59.19 -121.11 REMARK 500 7 SER A 118 -73.21 -60.57 REMARK 500 7 SER A 121 60.67 -113.19 REMARK 500 7 ALA A 143 -173.61 -178.46 REMARK 500 7 PRO A 146 -170.83 -69.81 REMARK 500 8 LEU A 73 159.55 61.04 REMARK 500 8 ALA A 99 131.51 -178.32 REMARK 500 REMARK 500 THIS ENTRY HAS 133 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TH5 RELATED DB: PDB REMARK 900 A STRUCTURAL HOMOLOG REMARK 900 RELATED ID: 1VEH RELATED DB: PDB REMARK 900 A STRUCTURAL HOMOLOG DBREF 2JNV A 73 153 UNP Q84LK7 NIFU1_ORYSA 73 153 SEQADV 2JNV MET A 71 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV GLY A 72 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV LEU A 154 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV GLU A 155 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV HIS A 156 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV HIS A 157 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV HIS A 158 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV HIS A 159 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV HIS A 160 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV HIS A 161 UNP Q84LK7 EXPRESSION TAG SEQRES 1 A 91 MET GLY LEU PRO LEU THR ALA GLY ASN VAL GLU SER VAL SEQRES 2 A 91 LEU ASP GLN VAL ARG PRO TYR LEU THR ALA ASP GLY GLY SEQRES 3 A 91 ASP VAL ALA LEU HIS GLU ILE ALA GLY ASN VAL VAL ARG SEQRES 4 A 91 LEU LYS LEU GLN GLY ALA CYS GLY SER CYS PRO SER SER SEQRES 5 A 91 LEU ILE THR ILE LYS ARG GLY ILE GLU ARG ARG LEU MET SEQRES 6 A 91 GLU LYS ILE PRO ASP VAL ALA ALA VAL GLU PRO VAL THR SEQRES 7 A 91 ASP LYS GLU THR GLY LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 GLY A 78 ASP A 85 1 8 HELIX 2 2 VAL A 87 THR A 92 1 6 HELIX 3 3 SER A 121 GLU A 136 1 16 SHEET 1 A 3 VAL A 98 ILE A 103 0 SHEET 2 A 3 VAL A 107 LEU A 112 -1 O LYS A 111 N ALA A 99 SHEET 3 A 3 ALA A 143 GLU A 145 1 O GLU A 145 N VAL A 108 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1