HEADER SURFACE ACTIVE PROTEIN 26-FEB-07 2JO7 TITLE SOLUTION STRUCTURE OF THE ADHESION PROTEIN BD37 FROM BABESIA DIVERGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED MEROZOITE SURFACE COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 69-292; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BABESIA DIVERGENS; SOURCE 3 ORGANISM_TAXID: 32595; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PIVEX 2.3MCS KEYWDS BABESIA DIVERGENS, SURFACE ANTIGEN, GPI-ANCHORED PROTEIN, RECOMBINANT KEYWDS 2 VACCINE, SURFACE ACTIVE PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR D.AUGUIN,Y.YANG,F.LOHR,S.AROLD,T.SCHETTERS,E.PRECIGOUT,A.GORENFLOT, AUTHOR 2 S.DELBECQ,C.ROUMESTAND REVDAT 4 20-DEC-23 2JO7 1 REMARK REVDAT 3 09-MAR-22 2JO7 1 REMARK REVDAT 2 24-FEB-09 2JO7 1 VERSN REVDAT 1 11-DEC-07 2JO7 0 JRNL AUTH S.DELBECQ,D.AUGUIN,Y.S.YANG,F.LOHR,S.AROLD,T.SCHETTERS, JRNL AUTH 2 E.PRECIGOUT,A.GORENFLOT,C.ROUMESTAND JRNL TITL THE SOLUTION STRUCTURE OF THE ADHESION PROTEIN BD37 FROM JRNL TITL 2 BABESIA DIVERGENS REVEALS STRUCTURAL HOMOLOGY WITH JRNL TITL 3 EUKARYOTIC PROTEINS INVOLVED IN MEMBRANE TRAFFICKING JRNL REF J.MOL.BIOL. V. 375 409 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 18035372 JRNL DOI 10.1016/J.JMB.2007.08.019 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PREDITOR 1, AMBER 8 REMARK 3 AUTHORS : BERJANSKII (PREDITOR), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, AND KOLL (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USE OF 1DNH RESIDUAL DIPOLAR COUPLINGS REMARK 3 VALUES IN ORDER TO IMPROVE LOCAL GEOMETRY REMARK 4 REMARK 4 2JO7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000100079. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 DELTA-BD37, 95% H2O/5% D2O; 0.8 REMARK 210 MM [U-99% 15N] DELTA-BD37, 95% REMARK 210 H2O/5% D2; 0.8 MM METHYL REMARK 210 SELECTIVE LABELING IVL 13C BD37, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; (IN-PHASE/ REMARK 210 ANTIPHASE) [15N-1H] HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CINDY, CYANA, GIFA 4, TALOS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 4 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 5 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 5 ARG A 278 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 6 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 6 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 6 ARG A 278 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 7 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 7 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 7 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 ARG A 278 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 8 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 ARG A 278 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 10 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 10 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 96 77.68 -43.55 REMARK 500 1 PHE A 97 77.32 -61.90 REMARK 500 1 THR A 98 151.91 -49.05 REMARK 500 1 LEU A 115 -67.63 -138.30 REMARK 500 1 ILE A 138 111.47 8.37 REMARK 500 1 ASP A 141 -176.22 -59.59 REMARK 500 1 SER A 193 26.22 -141.72 REMARK 500 1 GLU A 194 -38.95 -144.30 REMARK 500 1 LEU A 219 59.26 -106.27 REMARK 500 1 THR A 220 154.70 -44.05 REMARK 500 1 VAL A 235 56.13 36.55 REMARK 500 1 GLU A 237 55.65 29.50 REMARK 500 1 TYR A 238 104.79 -46.71 REMARK 500 1 MET A 242 34.57 -78.56 REMARK 500 1 ASN A 243 36.87 -153.42 REMARK 500 1 ALA A 244 -37.80 -167.84 REMARK 500 1 ALA A 245 73.56 -65.88 REMARK 500 1 SER A 260 -94.08 -126.18 REMARK 500 2 SER A 93 53.61 -147.98 REMARK 500 2 ASP A 94 20.86 -69.51 REMARK 500 2 PRO A 96 -2.52 -47.33 REMARK 500 2 PHE A 97 -166.05 47.10 REMARK 500 2 SER A 119 17.60 -143.45 REMARK 500 2 THR A 120 -57.70 -136.45 REMARK 500 2 ILE A 138 161.10 64.53 REMARK 500 2 ASP A 141 -175.89 -60.71 REMARK 500 2 GLU A 194 -34.52 -150.53 REMARK 500 2 THR A 220 150.47 -41.02 REMARK 500 2 PRO A 236 99.32 -37.57 REMARK 500 2 GLU A 237 41.52 38.89 REMARK 500 2 TYR A 238 92.94 1.33 REMARK 500 2 ASN A 243 46.83 39.98 REMARK 500 2 ALA A 244 -30.86 -143.85 REMARK 500 3 PRO A 96 76.86 -66.28 REMARK 500 3 PHE A 97 98.77 -53.73 REMARK 500 3 ILE A 99 2.57 -66.16 REMARK 500 3 LEU A 115 -65.60 -134.33 REMARK 500 3 ASP A 141 -170.49 42.37 REMARK 500 3 ALA A 166 51.12 -144.51 REMARK 500 3 SER A 193 27.33 -140.54 REMARK 500 3 GLU A 194 -31.98 -153.58 REMARK 500 3 ALA A 195 61.79 -69.52 REMARK 500 3 LEU A 219 49.08 -88.47 REMARK 500 3 PRO A 236 108.52 -37.68 REMARK 500 3 TYR A 238 98.59 -9.08 REMARK 500 3 SER A 260 48.37 -95.02 REMARK 500 3 SER A 261 176.56 66.34 REMARK 500 4 ASP A 94 29.02 -73.69 REMARK 500 4 PHE A 97 -170.20 50.37 REMARK 500 4 LEU A 115 -62.84 -133.85 REMARK 500 REMARK 500 THIS ENTRY HAS 153 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 132 0.07 SIDE CHAIN REMARK 500 1 ARG A 278 0.11 SIDE CHAIN REMARK 500 2 TYR A 105 0.08 SIDE CHAIN REMARK 500 2 TYR A 132 0.07 SIDE CHAIN REMARK 500 2 ARG A 278 0.10 SIDE CHAIN REMARK 500 3 ARG A 107 0.08 SIDE CHAIN REMARK 500 3 TYR A 238 0.09 SIDE CHAIN REMARK 500 4 TYR A 105 0.08 SIDE CHAIN REMARK 500 4 TYR A 132 0.07 SIDE CHAIN REMARK 500 4 TYR A 238 0.08 SIDE CHAIN REMARK 500 4 ARG A 278 0.11 SIDE CHAIN REMARK 500 5 TYR A 105 0.07 SIDE CHAIN REMARK 500 5 TYR A 232 0.08 SIDE CHAIN REMARK 500 6 ARG A 278 0.08 SIDE CHAIN REMARK 500 7 TYR A 132 0.07 SIDE CHAIN REMARK 500 7 TYR A 238 0.08 SIDE CHAIN REMARK 500 9 ARG A 80 0.09 SIDE CHAIN REMARK 500 9 TYR A 132 0.07 SIDE CHAIN REMARK 500 10 ARG A 107 0.08 SIDE CHAIN REMARK 500 10 TYR A 238 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DEETERMINATION METHOD: AUTHOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15158 RELATED DB: BMRB DBREF 2JO7 A 69 292 UNP Q8T117 Q8T117_BABDI 82 305 SEQRES 1 A 224 VAL LYS THR LEU ASP VAL LEU ARG GLY GLU LEU ARG GLY SEQRES 2 A 224 GLN ARG GLU ALA PHE LEU SER GLU ILE ILE LYS SER ASP SEQRES 3 A 224 GLY PRO PHE THR ILE LEU GLN LEU VAL GLY TYR LEU ARG SEQRES 4 A 224 VAL VAL ASP THR ASP LEU LEU LEU LYS VAL ASP SER THR SEQRES 5 A 224 LYS VAL ASP GLU ALA GLY LYS LYS VAL LYS ALA TYR LEU SEQRES 6 A 224 GLU LYS ILE GLY ILE ARG GLY ASP SER VAL GLU ALA ALA SEQRES 7 A 224 LEU ASP ASN LEU MET ILE LYS VAL TYR GLU ILE THR LYS SEQRES 8 A 224 GLY THR VAL GLU SER SER ALA GLN GLY THR ASP SER GLU SEQRES 9 A 224 GLU LEU LYS THR LEU LEU LEU LYS PHE SER GLU ASP LEU SEQRES 10 A 224 LYS ALA GLU GLN GLU LEU HIS SER GLU ALA LYS GLY GLY SEQRES 11 A 224 GLU ALA LEU LEU SER SER MET LYS THR GLN HIS ASP GLU SEQRES 12 A 224 LEU LEU LYS LYS PHE ALA ALA LEU THR PRO THR PHE LEU SEQRES 13 A 224 THR SER GLU ASP ILE SER GLY TYR LEU THR VAL PRO GLU SEQRES 14 A 224 TYR GLY ALA PRO MET ASN ALA ALA LYS TRP LYS LYS VAL SEQRES 15 A 224 GLU GLY MET ILE HIS GLY LYS LEU GLU SER SER GLU VAL SEQRES 16 A 224 PRO ALA ASN LEU LYS ALA LEU VAL ALA GLU LEU ILE GLU SEQRES 17 A 224 LEU ARG GLU GLN MET MET ASP LEU LEU TYR GLY PRO ILE SEQRES 18 A 224 GLY HIS HIS HELIX 1 1 LEU A 72 LYS A 92 1 21 HELIX 2 2 ILE A 99 ASP A 112 1 14 HELIX 3 3 LYS A 121 ILE A 136 1 16 HELIX 4 4 VAL A 143 LYS A 159 1 17 HELIX 5 5 GLU A 172 SER A 193 1 22 HELIX 6 6 GLY A 198 ALA A 218 1 21 HELIX 7 7 SER A 226 THR A 234 1 9 HELIX 8 8 LYS A 246 GLU A 259 1 14 HELIX 9 9 ALA A 265 TYR A 286 1 22 CISPEP 1 THR A 220 PRO A 221 1 -3.39 CISPEP 2 THR A 220 PRO A 221 2 -5.35 CISPEP 3 THR A 220 PRO A 221 3 -0.31 CISPEP 4 THR A 220 PRO A 221 4 3.54 CISPEP 5 THR A 220 PRO A 221 5 2.27 CISPEP 6 THR A 220 PRO A 221 6 -0.45 CISPEP 7 THR A 220 PRO A 221 7 -1.37 CISPEP 8 THR A 220 PRO A 221 8 -0.98 CISPEP 9 THR A 220 PRO A 221 9 -0.78 CISPEP 10 THR A 220 PRO A 221 10 -0.79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1