HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-MAR-07 2JOE TITLE NMR STRUCTURE OF E. COLI YEHR PROTEIN. NORTHEAST STRUCTURAL GENOMICS TITLE 2 TARGET ER538. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL LIPOPROTEIN YEHR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YEHR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21 KEYWDS SIX ANTIPARALLEL BETA STRANDS, ALPHA + BETA SANDWICH, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.DING,T.A.RAMELOT,J.R.CORT,C.X.CHEN,M.JIANG,K.CUNNINGHAM,L.MA, AUTHOR 2 R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE, AUTHOR 3 M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 20-DEC-23 2JOE 1 REMARK REVDAT 4 14-JUN-23 2JOE 1 REMARK REVDAT 3 05-FEB-20 2JOE 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JOE 1 VERSN REVDAT 1 10-APR-07 2JOE 0 JRNL AUTH K.DING,T.A.RAMELOT,J.R.CORT,M.JIANG,R.XIAO,G.V.T.SWAPNA, JRNL AUTH 2 G.T.MONTELIONE,M.A.KENNEDY JRNL TITL NMR STRUCTURE OF E. COLI YEHR PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.15.0, CNS 1.1 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISTANCE GEOMETRY SIMULATED ANNEALING REMARK 3 USING NIH XPLOR, FOLLOWED BY CNS WATER REFINEMENT. REMARK 4 REMARK 4 2JOE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000100086. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 293 REMARK 210 PH : 5.5; 5.5 REMARK 210 IONIC STRENGTH : 100; 100 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM NH4OAC, 100 MM REMARK 210 NACL, 10 MM DTT, 5 MM CACL2, REMARK 210 0.02 % NAN3, 95% H2O/5% D2O; 1 REMARK 210 MM [U-5% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM NH4OAC, 100 MM REMARK 210 NACL, 10 MM DTT, 5 MM CACL2, REMARK 210 0.02 % NAN3, 95% H2O/5% D2O; 1 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM NH4OAC, 100 MM REMARK 210 NACL, 10 MM DTT, 5 MM CACL2, REMARK 210 0.02 % NAN3, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HN(CO)CA; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HNHA; 3D C(CO)NH; 3D H(CCO)NH; REMARK 210 3D HCCH-TOCSY; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C (AROM) HSQC; 2D 1H-15N REMARK 210 (NH2) HSQC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C (ALIPH) NOESY; 3D 1H-13C REMARK 210 (AROM) NOESY; 4D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.1, NMRPIPE LINUX9, REMARK 210 AUTOSTRUCTURE 2.1.1 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST NOE REMARK 210 AND BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 LYS A 62 HD13 ILE A 99 1.32 REMARK 500 OE1 GLU A 119 HZ1 LYS A 123 1.55 REMARK 500 HZ3 LYS A 123 OE1 GLU A 129 1.55 REMARK 500 OE2 GLU A 129 HZ3 LYS A 131 1.58 REMARK 500 OE1 GLU A 107 HZ1 LYS A 111 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 3 91.95 59.57 REMARK 500 1 ALA A 42 -57.20 70.39 REMARK 500 1 LYS A 64 -93.07 49.05 REMARK 500 1 ASN A 65 42.49 -147.71 REMARK 500 1 ALA A 67 -149.59 -164.14 REMARK 500 1 THR A 76 -65.87 -101.84 REMARK 500 1 ASP A 77 -33.83 -171.47 REMARK 500 1 LYS A 90 15.52 -147.45 REMARK 500 1 ILE A 99 -80.63 -106.63 REMARK 500 1 ASN A 103 31.83 -79.72 REMARK 500 1 LYS A 131 -89.99 61.00 REMARK 500 1 LEU A 132 14.19 -155.97 REMARK 500 2 ASP A 3 -34.74 -132.31 REMARK 500 2 GLU A 5 142.84 179.86 REMARK 500 2 ASN A 15 -56.47 74.56 REMARK 500 2 LYS A 64 22.09 -78.63 REMARK 500 2 ALA A 67 -146.06 47.90 REMARK 500 2 THR A 76 -79.69 -108.59 REMARK 500 2 ASP A 77 -67.70 -147.63 REMARK 500 2 LYS A 90 -62.05 -150.58 REMARK 500 2 VAL A 91 -167.40 51.77 REMARK 500 2 VAL A 104 -72.66 -129.88 REMARK 500 2 LYS A 131 -171.32 69.41 REMARK 500 2 HIS A 134 45.68 -86.28 REMARK 500 2 HIS A 135 -83.88 66.53 REMARK 500 2 HIS A 137 28.12 -142.46 REMARK 500 2 HIS A 138 -65.74 -170.42 REMARK 500 3 LEU A 14 43.12 -102.12 REMARK 500 3 ASN A 15 -56.42 77.13 REMARK 500 3 ILE A 66 -71.52 -98.19 REMARK 500 3 ALA A 67 -146.12 -169.25 REMARK 500 3 THR A 76 -83.80 -104.47 REMARK 500 3 ASP A 77 -59.79 -160.00 REMARK 500 3 LYS A 90 -66.20 -143.30 REMARK 500 3 VAL A 91 -169.98 39.38 REMARK 500 3 THR A 114 -169.50 -117.38 REMARK 500 3 VAL A 130 -44.50 -139.84 REMARK 500 3 LYS A 131 -177.28 61.19 REMARK 500 3 HIS A 135 165.58 68.13 REMARK 500 3 HIS A 137 -81.55 -134.64 REMARK 500 4 ASN A 15 -14.20 71.35 REMARK 500 4 ALA A 61 2.24 -69.21 REMARK 500 4 LYS A 64 -93.07 65.16 REMARK 500 4 ASN A 65 40.14 -149.38 REMARK 500 4 ALA A 67 -145.01 -168.80 REMARK 500 4 ASP A 77 -53.63 178.09 REMARK 500 4 ASP A 108 -64.53 -91.53 REMARK 500 4 LYS A 131 97.11 69.31 REMARK 500 4 GLU A 133 -100.73 -102.46 REMARK 500 4 HIS A 134 -71.72 -153.64 REMARK 500 REMARK 500 THIS ENTRY HAS 190 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15167 RELATED DB: BMRB REMARK 900 RELATED ID: ER538 RELATED DB: TARGETDB DBREF 2JOE A 2 131 UNP P33354 YEHR_ECOLI 24 153 SEQADV 2JOE MET A 1 UNP P33354 CLONING ARTIFACT SEQADV 2JOE LEU A 132 UNP P33354 CLONING ARTIFACT SEQADV 2JOE GLU A 133 UNP P33354 CLONING ARTIFACT SEQADV 2JOE HIS A 134 UNP P33354 EXPRESSION TAG SEQADV 2JOE HIS A 135 UNP P33354 EXPRESSION TAG SEQADV 2JOE HIS A 136 UNP P33354 EXPRESSION TAG SEQADV 2JOE HIS A 137 UNP P33354 EXPRESSION TAG SEQADV 2JOE HIS A 138 UNP P33354 EXPRESSION TAG SEQADV 2JOE HIS A 139 UNP P33354 EXPRESSION TAG SEQRES 1 A 139 MET GLY ASP LYS GLU GLU SER LYS LYS PHE SER ALA ASN SEQRES 2 A 139 LEU ASN GLY THR GLU ILE ALA ILE THR TYR VAL TYR LYS SEQRES 3 A 139 GLY ASP LYS VAL LEU LYS GLN SER SER GLU THR LYS ILE SEQRES 4 A 139 GLN PHE ALA SER ILE GLY ALA THR THR LYS GLU ASP ALA SEQRES 5 A 139 ALA LYS THR LEU GLU PRO LEU SER ALA LYS TYR LYS ASN SEQRES 6 A 139 ILE ALA GLY VAL GLU GLU LYS LEU THR TYR THR ASP THR SEQRES 7 A 139 TYR ALA GLN GLU ASN VAL THR ILE ASP MET GLU LYS VAL SEQRES 8 A 139 ASP PHE LYS ALA LEU GLN GLY ILE SER GLY ILE ASN VAL SEQRES 9 A 139 SER ALA GLU ASP ALA LYS LYS GLY ILE THR MET ALA GLN SEQRES 10 A 139 MET GLU LEU VAL MET LYS ALA ALA GLY PHE LYS GLU VAL SEQRES 11 A 139 LYS LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 48 ALA A 61 1 14 HELIX 2 2 ASP A 92 GLN A 97 1 6 HELIX 3 3 SER A 105 GLY A 112 1 8 HELIX 4 4 THR A 114 ALA A 125 1 12 SHEET 1 A 6 GLU A 70 TYR A 75 0 SHEET 2 A 6 TYR A 79 ASP A 87 -1 O GLN A 81 N THR A 74 SHEET 3 A 6 LYS A 29 GLN A 40 -1 N ILE A 39 O ALA A 80 SHEET 4 A 6 THR A 17 LYS A 26 -1 N THR A 22 O SER A 34 SHEET 5 A 6 GLU A 6 LEU A 14 -1 N ALA A 12 O ILE A 19 SHEET 6 A 6 GLU A 129 LYS A 131 -1 O VAL A 130 N LYS A 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1