HEADER UNKNOWN FUNCTION 13-MAR-07 2JOH TITLE NMR STRUCTURE OF RABBIT PRION PROTEIN MUTATION S173N COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 91-228; COMPND 5 SYNONYM: PRP, PRP27-30, PRP33-35C, CD230 ANTIGEN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 GENE: PRNP, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-30A(+) KEYWDS PRION PROTEIN, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR J.LI,D.LIN REVDAT 7 20-NOV-24 2JOH 1 REMARK REVDAT 6 20-DEC-23 2JOH 1 REMARK REVDAT 5 20-OCT-21 2JOH 1 REMARK SEQADV REVDAT 4 20-OCT-10 2JOH 1 JRNL REVDAT 3 25-AUG-10 2JOH 1 JRNL REVDAT 2 24-FEB-09 2JOH 1 VERSN REVDAT 1 19-FEB-08 2JOH 0 JRNL AUTH Y.WEN,J.LI,W.YAO,M.XIONG,J.HONG,Y.PENG,G.XIAO,D.LIN JRNL TITL UNIQUE STRUCTURAL CHARACTERISTICS OF THE RABBIT PRION JRNL TITL 2 PROTEIN. JRNL REF J.BIOL.CHEM. V. 285 31682 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20639199 JRNL DOI 10.1074/JBC.M110.118844 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.LI,F.H.MEI,G.F.XIAO,C.Y.GUO,D.H.LIN REMARK 1 TITL 1H, 13C AND 15N RESONANCE ASSIGNMENTS OF RABBIT PRION REMARK 1 TITL 2 PROTEIN (91-228). REMARK 1 REF J.BIOMOL.NMR V. 38 181 2007 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 17415669 REMARK 1 DOI 10.1007/S10858-006-9115-9 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JOH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000100089. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.13 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM PROTEIN, 20 MM SODIUM REMARK 210 ACETATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 MET A 89 REMARK 465 HIS A 90 REMARK 465 GLN A 91 REMARK 465 GLY A 92 REMARK 465 GLY A 93 REMARK 465 THR A 94 REMARK 465 HIS A 95 REMARK 465 ASN A 96 REMARK 465 GLN A 97 REMARK 465 TRP A 98 REMARK 465 GLY A 99 REMARK 465 LYS A 100 REMARK 465 PRO A 101 REMARK 465 SER A 102 REMARK 465 LYS A 103 REMARK 465 PRO A 104 REMARK 465 LYS A 105 REMARK 465 THR A 106 REMARK 465 SER A 107 REMARK 465 MET A 108 REMARK 465 LYS A 109 REMARK 465 HIS A 110 REMARK 465 VAL A 111 REMARK 465 ALA A 112 REMARK 465 GLY A 113 REMARK 465 ALA A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 ALA A 117 REMARK 465 GLY A 118 REMARK 465 ALA A 119 REMARK 465 VAL A 120 REMARK 465 VAL A 121 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 LEU A 229 REMARK 465 GLU A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H THR A 198 HB2 ASP A 201 1.07 REMARK 500 H GLN A 171 HD1 TYR A 217 1.19 REMARK 500 HB3 GLN A 167 HB3 SER A 221 1.24 REMARK 500 HG23 VAL A 175 HD11 ILE A 214 1.30 REMARK 500 HG12 VAL A 175 HB2 CYS A 213 1.33 REMARK 500 O ASN A 142 H ASP A 146 1.56 REMARK 500 O ILE A 138 H PHE A 140 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 TYR A 156 CE1 TYR A 156 CZ 0.143 REMARK 500 2 TYR A 156 CZ TYR A 156 CE2 -0.141 REMARK 500 2 TYR A 161 CE1 TYR A 161 CZ -0.103 REMARK 500 2 TYR A 161 CZ TYR A 161 CE2 0.099 REMARK 500 4 TYR A 127 CE1 TYR A 127 CZ 0.083 REMARK 500 4 TYR A 127 CZ TYR A 127 CE2 -0.095 REMARK 500 15 PHE A 197 CE1 PHE A 197 CZ 0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 131 83.71 -23.96 REMARK 500 1 MET A 133 -144.81 42.55 REMARK 500 1 ARG A 135 44.56 37.20 REMARK 500 1 LEU A 137 73.23 52.92 REMARK 500 1 HIS A 139 -25.86 58.73 REMARK 500 1 PHE A 140 -27.63 74.85 REMARK 500 1 MET A 153 1.46 -67.43 REMARK 500 1 ARG A 155 -49.33 -158.01 REMARK 500 1 TYR A 156 57.32 -108.88 REMARK 500 1 PRO A 157 -164.51 -100.30 REMARK 500 1 GLN A 167 -11.22 68.92 REMARK 500 1 TYR A 168 22.38 39.65 REMARK 500 1 SER A 169 14.43 49.88 REMARK 500 1 ASN A 170 76.71 177.81 REMARK 500 1 VAL A 188 -53.06 -143.40 REMARK 500 2 SER A 131 82.75 -25.60 REMARK 500 2 MET A 133 -102.73 46.99 REMARK 500 2 SER A 134 12.07 -158.68 REMARK 500 2 LEU A 137 -53.72 70.18 REMARK 500 2 ILE A 138 2.10 56.96 REMARK 500 2 HIS A 139 -25.83 65.04 REMARK 500 2 PHE A 140 -3.52 70.50 REMARK 500 2 MET A 153 0.12 -63.84 REMARK 500 2 ARG A 155 -49.12 -144.62 REMARK 500 2 TYR A 156 56.02 -110.89 REMARK 500 2 ASP A 166 38.29 -77.40 REMARK 500 2 TYR A 168 -107.48 38.70 REMARK 500 2 ASN A 170 82.55 176.59 REMARK 500 2 VAL A 188 -46.31 -146.82 REMARK 500 3 SER A 131 81.23 -19.65 REMARK 500 3 ALA A 132 25.50 47.78 REMARK 500 3 MET A 133 -158.00 51.94 REMARK 500 3 HIS A 139 -5.88 54.78 REMARK 500 3 PHE A 140 -33.66 67.79 REMARK 500 3 ARG A 155 -41.03 -160.69 REMARK 500 3 TYR A 156 56.48 -112.99 REMARK 500 3 ASN A 158 51.80 -95.83 REMARK 500 3 ASP A 166 42.96 -80.49 REMARK 500 3 GLN A 167 94.16 56.73 REMARK 500 3 ASN A 170 51.31 -155.10 REMARK 500 3 VAL A 188 -39.09 -151.82 REMARK 500 3 THR A 190 -2.22 -140.07 REMARK 500 4 MET A 128 128.80 -33.33 REMARK 500 4 SER A 131 94.59 -30.54 REMARK 500 4 MET A 133 -110.83 44.46 REMARK 500 4 SER A 134 23.53 -149.48 REMARK 500 4 ARG A 135 46.51 33.03 REMARK 500 4 HIS A 139 -19.67 59.18 REMARK 500 4 PHE A 140 -17.81 71.51 REMARK 500 4 ARG A 155 -44.13 -162.31 REMARK 500 REMARK 500 THIS ENTRY HAS 225 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 156 PRO A 157 1 -133.72 REMARK 500 TYR A 156 PRO A 157 2 -130.66 REMARK 500 TYR A 156 PRO A 157 3 -126.56 REMARK 500 TYR A 156 PRO A 157 4 -131.09 REMARK 500 TYR A 156 PRO A 157 5 -131.27 REMARK 500 TYR A 156 PRO A 157 6 -128.37 REMARK 500 TYR A 156 PRO A 157 7 -130.86 REMARK 500 TYR A 156 PRO A 157 8 -134.64 REMARK 500 TYR A 156 PRO A 157 9 -129.16 REMARK 500 TYR A 156 PRO A 157 10 -134.34 REMARK 500 TYR A 156 PRO A 157 11 -131.37 REMARK 500 TYR A 156 PRO A 157 12 -129.46 REMARK 500 TYR A 156 PRO A 157 13 -133.36 REMARK 500 TYR A 156 PRO A 157 14 -132.18 REMARK 500 THR A 189 THR A 190 14 -149.78 REMARK 500 TYR A 156 PRO A 157 15 -135.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 156 0.07 SIDE CHAIN REMARK 500 11 TYR A 127 0.06 SIDE CHAIN REMARK 500 14 TYR A 154 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2JOH A 91 228 UNP Q95211 PRIO_RABIT 91 228 SEQADV 2JOH MET A 89 UNP Q95211 INITIATING METHIONINE SEQADV 2JOH HIS A 90 UNP Q95211 EXPRESSION TAG SEQADV 2JOH ASN A 173 UNP Q95211 SER 173 ENGINEERED MUTATION SEQADV 2JOH LEU A 229 UNP Q95211 EXPRESSION TAG SEQADV 2JOH GLU A 230 UNP Q95211 EXPRESSION TAG SEQADV 2JOH HIS A 231 UNP Q95211 EXPRESSION TAG SEQADV 2JOH HIS A 232 UNP Q95211 EXPRESSION TAG SEQADV 2JOH HIS A 233 UNP Q95211 EXPRESSION TAG SEQADV 2JOH HIS A 234 UNP Q95211 EXPRESSION TAG SEQADV 2JOH HIS A 235 UNP Q95211 EXPRESSION TAG SEQADV 2JOH HIS A 236 UNP Q95211 EXPRESSION TAG SEQRES 1 A 148 MET HIS GLN GLY GLY THR HIS ASN GLN TRP GLY LYS PRO SEQRES 2 A 148 SER LYS PRO LYS THR SER MET LYS HIS VAL ALA GLY ALA SEQRES 3 A 148 ALA ALA ALA GLY ALA VAL VAL GLY GLY LEU GLY GLY TYR SEQRES 4 A 148 MET LEU GLY SER ALA MET SER ARG PRO LEU ILE HIS PHE SEQRES 5 A 148 GLY ASN ASP TYR GLU ASP ARG TYR TYR ARG GLU ASN MET SEQRES 6 A 148 TYR ARG TYR PRO ASN GLN VAL TYR TYR ARG PRO VAL ASP SEQRES 7 A 148 GLN TYR SER ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL SEQRES 8 A 148 ASN ILE THR VAL LYS GLN HIS THR VAL THR THR THR THR SEQRES 9 A 148 LYS GLY GLU ASN PHE THR GLU THR ASP ILE LYS ILE MET SEQRES 10 A 148 GLU ARG VAL VAL GLU GLN MET CYS ILE THR GLN TYR GLN SEQRES 11 A 148 GLN GLU SER GLN ALA ALA TYR GLN ARG ALA LEU GLU HIS SEQRES 12 A 148 HIS HIS HIS HIS HIS HELIX 1 1 ASN A 142 MET A 153 1 12 HELIX 2 2 ASN A 170 HIS A 186 1 17 HELIX 3 3 THR A 198 ALA A 228 1 31 SHEET 1 A 2 LEU A 129 GLY A 130 0 SHEET 2 A 2 VAL A 160 TYR A 161 -1 O VAL A 160 N GLY A 130 SSBOND 1 CYS A 178 CYS A 213 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1