HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-MAR-07 2JOI TITLE NMR SOLUTION STRUCTURE OF HYPOTHETICAL PROTEIN TA0095 FROM TITLE 2 THERMOPLASMA ACIDOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN TA0095; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; SOURCE 3 ORGANISM_TAXID: 2303; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET-11B KEYWDS PROTEIN, STRUCTURAL GENOMICS, THERMOPLASMA ACIDOPHILUM, COG4004 KEYWDS 2 ORTHOLOGOUS GROUP, STRUCTURAL GENOMICS CONSORTIUM, SGC, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.JIMENEZ,E.LEON,J.SANTORO,M.RICO,A.YEE,STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (SGC) REVDAT 4 20-DEC-23 2JOI 1 REMARK REVDAT 3 09-MAR-22 2JOI 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JOI 1 VERSN REVDAT 1 02-OCT-07 2JOI 0 JRNL AUTH E.LEON,A.YEE,A.R.ORTIZ,J.SANTORO,M.RICO,M.A.JIMENEZ JRNL TITL SOLUTION STRUCTURE OF THE HYPOTHETICAL PROTEIN TA0095 FROM JRNL TITL 2 THERMOPLASMA ACIDOPHILUM: A NOVEL SUPERFAMILY WITH A JRNL TITL 3 TWO-LAYER SANDWICH ARCHITECTURE JRNL REF PROTEIN SCI. V. 16 2278 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17766377 JRNL DOI 10.1110/PS.072869607 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, CYANA 1.0 REMARK 3 AUTHORS : GODDARD (SPARKY), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JOI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000100090. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 0.5; 0.0 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] H6TA0095, REMARK 210 450 MM SODIUM CHLORIDE, 25 MM REMARK 210 SODIUM PHOSPHATE, 10 MM DTT, 10 REMARK 210 MM ZN CHLORIDE, 0.1-0.5 MM DSS, REMARK 210 90% H2O/10% D2O; 1 MM [U-100% REMARK 210 15N] H6TA0095, 0.5-1.0 MM DSS, REMARK 210 90% H2O/10% D2O; 1 MM H6TA0095, REMARK 210 0.5-1.0 MM DSS, 90% H2O/10% D2O; REMARK 210 1 MM H6TA0095, 0.5-1.0 MM DSS, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HACANH; REMARK 210 3D 1H-15N NOESY; 3D HNHA; 3D 1H- REMARK 210 15N TOCSY; 2D 1H-1H COSY; 2D 1H- REMARK 210 1H TOCSY; 2D 1H-1H NOESY; 2D 1H- REMARK 210 13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 1.0, TOPSPIN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 ASN A 16 REMARK 465 LEU A 17 REMARK 465 TYR A 18 REMARK 465 PHE A 19 REMARK 465 GLN A 20 REMARK 465 GLY A 21 REMARK 465 HIS A 22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 97 H GLU A 101 1.53 REMARK 500 O LYS A 112 H THR A 116 1.54 REMARK 500 O ILE A 100 HG1 THR A 104 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 ASP A 118 C ASP A 118 OXT 0.170 REMARK 500 2 ASP A 118 C ASP A 118 OXT 0.171 REMARK 500 3 ASP A 118 C ASP A 118 OXT 0.170 REMARK 500 4 ASP A 118 C ASP A 118 OXT 0.171 REMARK 500 5 ASP A 118 C ASP A 118 OXT 0.171 REMARK 500 6 ASP A 118 C ASP A 118 OXT 0.172 REMARK 500 7 ASP A 118 C ASP A 118 OXT 0.172 REMARK 500 8 ASP A 118 C ASP A 118 OXT 0.171 REMARK 500 9 ASP A 118 C ASP A 118 OXT 0.172 REMARK 500 10 ASP A 118 C ASP A 118 OXT 0.172 REMARK 500 11 ASP A 118 C ASP A 118 OXT 0.171 REMARK 500 12 ASP A 118 C ASP A 118 OXT 0.171 REMARK 500 13 ASP A 118 C ASP A 118 OXT 0.171 REMARK 500 14 ASP A 118 C ASP A 118 OXT 0.171 REMARK 500 15 ASP A 118 C ASP A 118 OXT 0.170 REMARK 500 16 ASP A 118 C ASP A 118 OXT 0.171 REMARK 500 17 ASP A 118 C ASP A 118 OXT 0.170 REMARK 500 18 ASP A 118 C ASP A 118 OXT 0.172 REMARK 500 19 ASP A 118 C ASP A 118 OXT 0.171 REMARK 500 20 ASP A 118 C ASP A 118 OXT 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 32 159.34 -42.55 REMARK 500 1 THR A 34 32.06 -140.61 REMARK 500 1 ASP A 88 106.28 -53.50 REMARK 500 2 PHE A 32 165.51 -46.14 REMARK 500 2 ASP A 88 105.53 -52.26 REMARK 500 3 PHE A 32 159.93 -43.18 REMARK 500 3 SER A 65 -62.40 -94.23 REMARK 500 3 ASP A 88 105.77 -56.06 REMARK 500 4 PHE A 32 161.26 -44.33 REMARK 500 5 PHE A 32 160.46 -40.39 REMARK 500 5 ASP A 88 105.17 -58.14 REMARK 500 5 LYS A 117 162.40 -46.39 REMARK 500 6 PHE A 32 160.25 -44.67 REMARK 500 6 ASP A 84 98.98 -66.73 REMARK 500 6 ASP A 88 105.48 -57.00 REMARK 500 8 PHE A 32 159.97 -40.77 REMARK 500 8 ASP A 88 101.86 -56.24 REMARK 500 9 LYS A 30 99.85 -66.77 REMARK 500 9 SER A 65 -62.51 -96.54 REMARK 500 9 ASP A 84 169.65 -44.59 REMARK 500 9 SER A 85 -63.14 -99.57 REMARK 500 9 ASP A 86 52.62 -100.26 REMARK 500 9 ASP A 88 102.01 -56.27 REMARK 500 9 THR A 116 71.51 -103.75 REMARK 500 10 ASP A 84 171.24 -45.38 REMARK 500 10 THR A 116 49.82 -84.47 REMARK 500 11 SER A 65 -62.33 -92.37 REMARK 500 11 LYS A 117 157.09 -42.91 REMARK 500 12 PHE A 32 167.00 -46.20 REMARK 500 12 ARG A 74 -65.27 -90.39 REMARK 500 12 ASP A 84 167.72 -43.55 REMARK 500 12 ASP A 88 108.09 -53.86 REMARK 500 13 PHE A 32 165.77 -42.66 REMARK 500 13 ASP A 84 172.34 -45.40 REMARK 500 13 SER A 85 -63.38 -108.22 REMARK 500 13 LYS A 117 40.84 -90.73 REMARK 500 14 LYS A 30 99.15 -67.41 REMARK 500 14 PHE A 32 157.69 -48.37 REMARK 500 14 ASP A 84 179.89 -48.65 REMARK 500 14 ASP A 86 48.50 -101.04 REMARK 500 14 ASP A 88 107.04 -51.56 REMARK 500 14 THR A 116 76.61 -110.56 REMARK 500 15 PHE A 32 165.28 -42.62 REMARK 500 15 ASP A 84 168.35 -44.15 REMARK 500 16 PHE A 32 162.35 -47.82 REMARK 500 16 ASP A 88 105.16 -51.15 REMARK 500 17 PHE A 32 159.76 -49.29 REMARK 500 17 ARG A 74 -74.99 -68.99 REMARK 500 17 ASP A 88 106.47 -53.39 REMARK 500 18 PHE A 32 161.50 -48.10 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15172 RELATED DB: BMRB DBREF 2JOI A 23 118 UNP Q9HLX9 Q9HLX9_THEAC 1 96 SEQADV 2JOI MET A 1 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI GLY A 2 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI THR A 3 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI SER A 4 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI HIS A 5 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI HIS A 6 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI HIS A 7 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI HIS A 8 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI HIS A 9 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI HIS A 10 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI SER A 11 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI SER A 12 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI GLY A 13 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI ARG A 14 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI GLU A 15 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI ASN A 16 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI LEU A 17 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI TYR A 18 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI PHE A 19 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI GLN A 20 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI GLY A 21 UNP Q9HLX9 EXPRESSION TAG SEQADV 2JOI HIS A 22 UNP Q9HLX9 EXPRESSION TAG SEQRES 1 A 118 MET GLY THR SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 118 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ARG GLU TYR SEQRES 3 A 118 PRO VAL LYS LYS GLY PHE PRO THR ASP TYR ASP SER ILE SEQRES 4 A 118 LYS ARG LYS ILE SER GLU LEU GLY PHE ASP VAL LYS SER SEQRES 5 A 118 GLU GLY ASP LEU ILE ILE ALA SER ILE PRO GLY ILE SER SEQRES 6 A 118 ARG ILE GLU ILE LYS PRO ASP LYS ARG LYS ILE LEU VAL SEQRES 7 A 118 ASN THR GLY ASP TYR ASP SER ASP ALA ASP LYS LEU ALA SEQRES 8 A 118 VAL VAL ARG THR TYR ASN ASP PHE ILE GLU LYS LEU THR SEQRES 9 A 118 GLY TYR SER ALA LYS GLU ARG LYS LYS MET MET THR LYS SEQRES 10 A 118 ASP HELIX 1 1 ASP A 35 GLY A 47 1 13 HELIX 2 2 ASP A 88 GLY A 105 1 18 HELIX 3 3 SER A 107 LYS A 109 5 3 HELIX 4 4 GLU A 110 THR A 116 1 7 SHEET 1 A 5 ARG A 24 TYR A 26 0 SHEET 2 A 5 ILE A 76 THR A 80 -1 O VAL A 78 N ARG A 24 SHEET 3 A 5 ILE A 67 PRO A 71 -1 N GLU A 68 O ASN A 79 SHEET 4 A 5 LEU A 56 SER A 60 -1 N ILE A 57 O ILE A 69 SHEET 5 A 5 ASP A 49 GLU A 53 -1 N ASP A 49 O SER A 60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1