HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-MAR-07 2JOQ TITLE SOLUTION STRUCTURE OF PROTEIN HP0495 FROM H. PYLORI; NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET PT2; ONTARIO CENTRE FOR TITLE 3 STRUCTURAL PROTEOMICS TARGET HP0488 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN HP_0495; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 GENE: HP0495; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 (GOLD); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: P11 KEYWDS HP0495, STRUCTURAL GENOMICS, NON-UNIFORM SAMPLING, ABACUS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS, OCSP, KEYWDS 4 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.GUTMANAS,A.LEMAK,A.YEE,M.KARRA,S.SRISAILAM,A.SEMESI,C.H.ARROWSMITH, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG),ONTARIO CENTRE FOR AUTHOR 3 STRUCTURAL PROTEOMICS (OCSP) REVDAT 7 20-DEC-23 2JOQ 1 REMARK REVDAT 6 14-JUN-23 2JOQ 1 REMARK REVDAT 5 05-FEB-20 2JOQ 1 REMARK SEQADV REVDAT 4 18-JAN-12 2JOQ 1 REMARK VERSN REVDAT 3 24-FEB-09 2JOQ 1 VERSN REVDAT 2 24-APR-07 2JOQ 1 AUTHOR REVDAT 1 03-APR-07 2JOQ 0 JRNL AUTH A.GUTMANAS,A.LEMAK,A.YEE,M.KARRA,S.SRISAILAM,A.SEMESI, JRNL AUTH 2 C.H.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF PROTEIN HP0495 FROM H. PYLORI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LEMAK,A.GUTMANAS,S.CHITAYAT,M.KARRA,C.FARES,M.SUNNERHAGEN, REMARK 1 AUTH 2 C.H.ARROWSMITH REMARK 1 TITL A NOVEL STRATEGY FOR NMR RESONANCE ASSIGNMENT AND PROTEIN REMARK 1 TITL 2 STRUCTURE DETERMINATION. REMARK 1 REF J.BIOMOL.NMR V. 49 27 2011 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 21161328 REMARK 1 DOI 10.1007/S10858-010-9458-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT WITH CNS REMARK 4 REMARK 4 2JOQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000100098. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] HP0495, 10 REMARK 210 MM TRIS, 300 MM SODIUM CHLORIDE, REMARK 210 1 MM BENZAMIDINE, 10 MM DTT, REMARK 210 0.01 % SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O; 0.5 MM [U-13C; U-15N] REMARK 210 HP0495, 10 MM TRIS, 300 MM REMARK 210 SODIUM CHLORIDE, 1 MM REMARK 210 BENZAMIDINE, 10 MM DTT, 0.01 % REMARK 210 SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO SPARSE; REMARK 210 3D HNCA SPARSE; 3D H(CCCO)NH- REMARK 210 TOCSY SPARSE; 3D (H)C(CCO)NH- REMARK 210 TOCSY; 4D HBHACBCA(CO)NH PR; 4D REMARK 210 HC(CCO)NH-TOCSY PR; 3D 1H-15N REMARK 210 NOESY SPARSE; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D H(C)CH-TOCSY REMARK 210 SPARSE; 3D (H)CCH-TOCSY SPARSE; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D 1H- REMARK 210 13C NOESY SPARSE; 3D H(C)CH- REMARK 210 TOCSY AROMATIC, SPARSE; 3D (H) REMARK 210 CCH-TOCSY AROMATIC; 2D CT 1H-13C REMARK 210 HSQC; 2D CT 1H-13C HSQC AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, SPARKY, TALOS, REMARK 210 ABACUS, MDD/MDDGUI, NMRPIPE, PR REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 BOTH 4D EXPERIMENTS WERE COLLECTED AS 2D PROJECTION PLANES AND REMARK 210 PROCESSED WITH PR REMARK 210 EXPERIMENTS MARKED "SPARSE" WERE COLLECTED WITH NON-UNIFORM REMARK 210 SAMPLING AND PROCESSED WITH MDD REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 5 -178.50 -62.10 REMARK 500 1 ASP A 83 -36.64 77.33 REMARK 500 2 THR A 26 42.23 -86.72 REMARK 500 2 SER A 31 -62.73 -130.58 REMARK 500 2 LYS A 49 -81.82 -69.30 REMARK 500 2 ALA A 55 19.95 59.85 REMARK 500 2 ASN A 68 -178.46 -170.95 REMARK 500 2 ASP A 83 -33.20 72.95 REMARK 500 3 PRO A 5 99.01 -52.50 REMARK 500 3 SER A 31 -53.59 -146.47 REMARK 500 3 ASP A 83 -40.09 73.42 REMARK 500 4 SER A 31 -63.52 -137.65 REMARK 500 4 LYS A 49 -80.11 -76.85 REMARK 500 4 ASP A 83 -38.90 71.93 REMARK 500 5 PRO A 5 93.55 -69.53 REMARK 500 5 LYS A 10 127.21 74.36 REMARK 500 5 SER A 31 -66.73 -124.76 REMARK 500 5 GLN A 41 -3.27 65.32 REMARK 500 5 ASP A 83 -27.48 74.38 REMARK 500 6 SER A 31 -63.96 -126.39 REMARK 500 6 LYS A 49 -70.94 -75.33 REMARK 500 6 ASP A 83 -39.45 72.37 REMARK 500 7 SER A 31 -66.64 -130.51 REMARK 500 7 ASP A 83 -37.00 73.16 REMARK 500 8 LYS A 10 127.04 68.96 REMARK 500 8 SER A 31 -64.87 -123.39 REMARK 500 8 ALA A 55 -38.32 74.25 REMARK 500 8 ASP A 83 -34.62 74.24 REMARK 500 9 SER A 31 -59.75 -137.72 REMARK 500 9 LYS A 49 -71.19 -82.95 REMARK 500 9 ASP A 83 -32.13 72.57 REMARK 500 10 LYS A 10 142.90 68.11 REMARK 500 10 SER A 31 -70.62 -145.17 REMARK 500 10 LYS A 49 -77.45 -81.87 REMARK 500 10 SER A 52 87.94 -64.42 REMARK 500 10 LYS A 53 -71.23 35.08 REMARK 500 10 ASP A 83 -40.64 73.24 REMARK 500 11 SER A 8 47.58 -84.57 REMARK 500 11 LYS A 49 -73.88 -90.61 REMARK 500 11 SER A 52 170.11 -59.29 REMARK 500 11 ASP A 83 -42.93 73.31 REMARK 500 12 LYS A 10 151.60 70.77 REMARK 500 12 THR A 26 33.97 -88.37 REMARK 500 12 SER A 31 -77.49 -111.94 REMARK 500 12 ALA A 55 17.51 58.23 REMARK 500 12 ASP A 83 -37.65 73.18 REMARK 500 13 THR A 26 32.10 -94.91 REMARK 500 13 SER A 31 -64.08 -125.89 REMARK 500 13 SER A 52 86.26 -69.27 REMARK 500 13 LYS A 53 -82.36 47.00 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PT2 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15190 RELATED DB: BMRB DBREF 2JOQ A 4 89 UNP O25237 Y495_HELPY 1 86 SEQADV 2JOQ GLN A 1 UNP O25237 CLONING ARTIFACT SEQADV 2JOQ GLY A 2 UNP O25237 CLONING ARTIFACT SEQADV 2JOQ HIS A 3 UNP O25237 CLONING ARTIFACT SEQADV 2JOQ GLY A 90 UNP O25237 CLONING ARTIFACT SEQADV 2JOQ SER A 91 UNP O25237 CLONING ARTIFACT SEQRES 1 A 91 GLN GLY HIS MET PRO SER ASP SER LYS LYS PRO THR ILE SEQRES 2 A 91 ILE TYR PRO CYS LEU TRP ASP TYR ARG VAL ILE MET THR SEQRES 3 A 91 THR LYS ASP THR SER THR LEU LYS GLU LEU LEU GLU THR SEQRES 4 A 91 TYR GLN ARG PRO PHE LYS LEU GLU PHE LYS ASN THR SER SEQRES 5 A 91 LYS ASN ALA LYS PHE TYR SER PHE ASN VAL SER MET GLU SEQRES 6 A 91 VAL SER ASN GLU SER GLU ARG ASN GLU ILE PHE GLN LYS SEQRES 7 A 91 ILE SER GLN LEU ASP LYS VAL VAL GLN THR LEU GLY SER HELIX 1 1 SER A 31 THR A 39 1 9 HELIX 2 2 ASN A 68 SER A 80 1 13 SHEET 1 A 4 PHE A 44 THR A 51 0 SHEET 2 A 4 TYR A 58 VAL A 66 -1 O SER A 59 N ASN A 50 SHEET 3 A 4 CYS A 17 MET A 25 -1 N TYR A 21 O VAL A 62 SHEET 4 A 4 VAL A 85 LEU A 89 -1 O VAL A 86 N ILE A 24 CISPEP 1 TYR A 15 PRO A 16 1 -0.87 CISPEP 2 TYR A 15 PRO A 16 2 -1.48 CISPEP 3 TYR A 15 PRO A 16 3 0.53 CISPEP 4 TYR A 15 PRO A 16 4 -0.31 CISPEP 5 TYR A 15 PRO A 16 5 0.95 CISPEP 6 TYR A 15 PRO A 16 6 -0.82 CISPEP 7 TYR A 15 PRO A 16 7 1.66 CISPEP 8 TYR A 15 PRO A 16 8 -1.45 CISPEP 9 TYR A 15 PRO A 16 9 4.29 CISPEP 10 TYR A 15 PRO A 16 10 0.99 CISPEP 11 TYR A 15 PRO A 16 11 0.18 CISPEP 12 TYR A 15 PRO A 16 12 1.03 CISPEP 13 TYR A 15 PRO A 16 13 1.11 CISPEP 14 TYR A 15 PRO A 16 14 1.52 CISPEP 15 TYR A 15 PRO A 16 15 -0.91 CISPEP 16 TYR A 15 PRO A 16 16 -1.01 CISPEP 17 TYR A 15 PRO A 16 17 -1.44 CISPEP 18 TYR A 15 PRO A 16 18 -0.80 CISPEP 19 TYR A 15 PRO A 16 19 0.71 CISPEP 20 TYR A 15 PRO A 16 20 -3.93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1