HEADER TRANSPORT PROTEIN 06-APR-07 2JOW TITLE DIFFERENCES IN THE ELECTROSTATIC SURFACES OF THE TYPE III SECRETION TITLE 2 NEEDLE PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PRGI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-75; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 GENE: PRGI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS NEEDLE PROTEIN, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.WANG,A.N.OUELLETTE,C.W.EGAN,R.N.DE GUZMAN REVDAT 5 14-JUN-23 2JOW 1 REMARK REVDAT 4 05-FEB-20 2JOW 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JOW 1 VERSN REVDAT 2 04-SEP-07 2JOW 1 JRNL REVDAT 1 24-JUL-07 2JOW 0 JRNL AUTH Y.WANG,A.N.OUELLETTE,C.W.EGAN,T.RATHINAVELAN,W.IM, JRNL AUTH 2 R.N.DE GUZMAN JRNL TITL DIFFERENCES IN THE ELECTROSTATIC SURFACES OF THE TYPE III JRNL TITL 2 SECRETION NEEDLE PROTEINS PRGI, BSAL, AND MXIH JRNL REF J.MOL.BIOL. V. 371 1304 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17617421 JRNL DOI 10.1016/J.JMB.2007.06.034 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7, CYANA REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLL (AMBER), GUNTERT, MUMENTHALER REMARK 3 AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JOW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000100104. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM ENTITY, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCO; 3D CBCA(CO)NH; 3D HNCACB; REMARK 210 3D HBHA(CO)NH; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.4 DEGREES REMARK 500 1 LEU A 34 CB - CG - CD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 2 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.3 DEGREES REMARK 500 3 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.6 DEGREES REMARK 500 3 LEU A 34 CB - CG - CD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 4 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.8 DEGREES REMARK 500 4 LEU A 34 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 4 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 5 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 6 LEU A 23 CB - CG - CD1 ANGL. DEV. = 12.5 DEGREES REMARK 500 7 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.6 DEGREES REMARK 500 8 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.8 DEGREES REMARK 500 8 LEU A 34 CB - CG - CD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 9 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.5 DEGREES REMARK 500 9 LEU A 34 CB - CG - CD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 10 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.7 DEGREES REMARK 500 10 LEU A 34 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 10 TYR A 57 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 11 LEU A 23 CB - CG - CD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 11 LEU A 34 CB - CG - CD2 ANGL. DEV. = 10.5 DEGREES REMARK 500 11 TYR A 57 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 11 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 12 LEU A 23 CB - CG - CD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 13 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 13 LEU A 34 CB - CG - CD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 14 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.5 DEGREES REMARK 500 14 LEU A 34 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 14 TYR A 57 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 14 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 15 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 15 LEU A 34 CB - CG - CD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 16 LEU A 23 CB - CG - CD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 17 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.5 DEGREES REMARK 500 18 LEU A 23 CB - CG - CD2 ANGL. DEV. = 10.8 DEGREES REMARK 500 18 LEU A 34 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 19 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.4 DEGREES REMARK 500 19 LEU A 44 CB - CG - CD1 ANGL. DEV. = 16.3 DEGREES REMARK 500 20 LEU A 23 CB - CG - CD2 ANGL. DEV. = 11.3 DEGREES REMARK 500 20 ASP A 40 N - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 20 LEU A 44 CB - CG - CD1 ANGL. DEV. = 17.3 DEGREES REMARK 500 20 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 11 -41.37 -130.35 REMARK 500 1 PRO A 38 -91.13 -16.03 REMARK 500 1 ASP A 40 107.24 -48.47 REMARK 500 1 GLN A 61 22.90 -75.02 REMARK 500 1 SER A 62 16.73 -142.29 REMARK 500 1 ASN A 63 -50.39 -122.88 REMARK 500 2 PRO A 4 -2.68 -52.79 REMARK 500 2 ASP A 11 -45.10 -130.69 REMARK 500 2 LYS A 37 48.30 -140.05 REMARK 500 2 PRO A 38 -90.64 -16.00 REMARK 500 2 ASP A 40 107.42 -48.79 REMARK 500 2 GLN A 61 27.11 -76.19 REMARK 500 2 SER A 62 12.95 -144.83 REMARK 500 2 ASN A 63 -51.07 -121.49 REMARK 500 3 TYR A 8 -36.57 -148.98 REMARK 500 3 THR A 18 -31.83 -138.93 REMARK 500 3 LYS A 37 47.46 -140.76 REMARK 500 3 PRO A 38 -90.92 -16.20 REMARK 500 3 ASP A 40 106.85 -49.48 REMARK 500 3 GLN A 61 30.48 -78.44 REMARK 500 3 SER A 62 18.22 -145.48 REMARK 500 3 ASN A 63 -47.29 -130.41 REMARK 500 3 HIS A 78 -30.31 -134.37 REMARK 500 4 LYS A 37 46.63 -140.08 REMARK 500 4 PRO A 38 -91.58 -14.90 REMARK 500 4 ASP A 40 107.63 -48.26 REMARK 500 4 GLN A 61 27.89 -78.26 REMARK 500 4 SER A 62 18.32 -144.50 REMARK 500 4 ASN A 63 -51.76 -121.75 REMARK 500 5 ASP A 11 10.94 -140.24 REMARK 500 5 LYS A 37 49.13 -141.34 REMARK 500 5 PRO A 38 -90.13 -17.17 REMARK 500 5 ASP A 40 106.92 -49.22 REMARK 500 5 GLN A 61 30.36 -79.28 REMARK 500 5 SER A 62 17.77 -146.18 REMARK 500 5 ASN A 63 -51.02 -125.33 REMARK 500 6 PRO A 38 -89.94 -17.09 REMARK 500 6 ASP A 40 107.09 -49.35 REMARK 500 6 GLN A 61 25.34 -76.98 REMARK 500 6 SER A 62 16.05 -143.39 REMARK 500 6 HIS A 80 60.32 14.62 REMARK 500 7 TYR A 8 -43.99 -150.08 REMARK 500 7 LYS A 37 48.77 -140.53 REMARK 500 7 PRO A 38 -90.49 -16.87 REMARK 500 7 ASP A 40 106.68 -49.19 REMARK 500 7 GLN A 61 33.36 -81.78 REMARK 500 7 HIS A 80 -32.99 40.44 REMARK 500 8 PRO A 4 43.94 -67.96 REMARK 500 8 LYS A 37 47.63 -140.27 REMARK 500 8 PRO A 38 -91.15 -15.94 REMARK 500 REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 57 0.11 SIDE CHAIN REMARK 500 2 TYR A 57 0.11 SIDE CHAIN REMARK 500 3 TYR A 57 0.12 SIDE CHAIN REMARK 500 4 TYR A 57 0.12 SIDE CHAIN REMARK 500 5 TYR A 57 0.12 SIDE CHAIN REMARK 500 6 TYR A 57 0.09 SIDE CHAIN REMARK 500 7 TYR A 57 0.11 SIDE CHAIN REMARK 500 8 TYR A 57 0.12 SIDE CHAIN REMARK 500 9 TYR A 57 0.12 SIDE CHAIN REMARK 500 10 TYR A 57 0.12 SIDE CHAIN REMARK 500 11 TYR A 57 0.18 SIDE CHAIN REMARK 500 12 TYR A 57 0.09 SIDE CHAIN REMARK 500 13 TYR A 57 0.11 SIDE CHAIN REMARK 500 14 TYR A 57 0.17 SIDE CHAIN REMARK 500 15 TYR A 57 0.09 SIDE CHAIN REMARK 500 16 TYR A 57 0.14 SIDE CHAIN REMARK 500 17 TYR A 57 0.12 SIDE CHAIN REMARK 500 18 TYR A 57 0.10 SIDE CHAIN REMARK 500 19 TYR A 57 0.11 SIDE CHAIN REMARK 500 20 TYR A 57 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15206 RELATED DB: BMRB DBREF 2JOW A 1 75 UNP P41784 PRGI_SALTY 1 75 SEQADV 2JOW LEU A 76 UNP P41784 CLONING ARTIFACT SEQADV 2JOW GLU A 77 UNP P41784 CLONING ARTIFACT SEQADV 2JOW HIS A 78 UNP P41784 CLONING ARTIFACT SEQADV 2JOW HIS A 79 UNP P41784 CLONING ARTIFACT SEQADV 2JOW HIS A 80 UNP P41784 CLONING ARTIFACT SEQADV 2JOW HIS A 81 UNP P41784 CLONING ARTIFACT SEQADV 2JOW HIS A 82 UNP P41784 CLONING ARTIFACT SEQADV 2JOW HIS A 83 UNP P41784 CLONING ARTIFACT SEQRES 1 A 83 MET ALA THR PRO TRP SER GLY TYR LEU ASP ASP VAL SER SEQRES 2 A 83 ALA LYS PHE ASP THR GLY VAL ASP ASN LEU GLN THR GLN SEQRES 3 A 83 VAL THR GLU ALA LEU ASP LYS LEU ALA ALA LYS PRO SER SEQRES 4 A 83 ASP PRO ALA LEU LEU ALA ALA TYR GLN SER LYS LEU SER SEQRES 5 A 83 GLU TYR ASN LEU TYR ARG ASN ALA GLN SER ASN THR VAL SEQRES 6 A 83 LYS VAL PHE LYS ASP ILE ASP ALA ALA ILE LEU GLU HIS SEQRES 7 A 83 HIS HIS HIS HIS HIS HELIX 1 1 PRO A 4 GLY A 7 5 4 HELIX 2 2 TYR A 8 SER A 13 1 6 HELIX 3 3 LYS A 15 ALA A 35 1 21 HELIX 4 4 ASP A 40 GLN A 61 1 22 HELIX 5 5 SER A 62 LYS A 66 5 5 HELIX 6 6 VAL A 67 HIS A 82 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1