HEADER LIPID BINDING PROTEIN 10-APR-07 2JOZ TITLE SOLUTION NMR STRUCTURE OF PROTEIN YXEF, NORTHEAST STRUCTURAL GENOMICS TITLE 2 CONSORTIUM TARGET SR500A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YXEF; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YXEF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21 KEYWDS GFT, NESG, LIPOPROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, LIPID BINDING KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.WU,G.LIU,Q.ZHANG,S.BHATNAGAR,C.CHEN,C.NWOSU,R.XIAO,K.CUNNINGHAM, AUTHOR 2 J.LOCKE,L.MA,G.SWAPNA,M.BARAN,T.ACTON,G.MONTELIONE,T.SZYPERSKI, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 08-MAY-24 2JOZ 1 REMARK REVDAT 5 20-DEC-23 2JOZ 1 REMARK REVDAT 4 14-JUN-23 2JOZ 1 REMARK REVDAT 3 05-FEB-20 2JOZ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JOZ 1 VERSN REVDAT 1 15-MAY-07 2JOZ 0 JRNL AUTH Y.WU,G.LIU,Q.ZHANG,S.BHATNAGAR,C.CHEN,C.NWOSU,R.XIAO, JRNL AUTH 2 K.CUNNINGHAM,J.LOCKE,L.MA,G.SWAPNA,M.BARAN,T.ACTON, JRNL AUTH 3 G.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF PROTEIN YXEF , NORTHEAST JRNL TITL 2 STRUCTURAL GENOMICS CONSORTIUM TARGET SR500A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CNS 1.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JOZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000100107. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 ENTITY, 95% H2O/5% D2O; 1 MM [U- REMARK 210 10% 13C; U-100% 15N] ENTITY, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4,3D, GFT HNNCABCA; 4,3D, GFT REMARK 210 CABCACONNH; 4,3D, GFT HCCH COSY; REMARK 210 3D, 15N-13C RESOLVED REMARK 210 SIMULTANIOUS NOESY; 3D HNCO; 1H- REMARK 210 13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 9.0, AUTOSTRUCTURE 1.0, REMARK 210 XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 91 OE1 GLU A 101 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 PRO A 85 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 9 PRO A 85 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 10 PRO A 85 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 15 PRO A 85 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 16 PRO A 85 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 7 -59.35 -140.96 REMARK 500 1 GLN A 8 -167.07 64.08 REMARK 500 1 PRO A 29 -163.00 -61.16 REMARK 500 1 GLU A 42 -70.19 -44.33 REMARK 500 1 ASP A 72 90.45 -169.95 REMARK 500 1 ASN A 95 -55.44 71.81 REMARK 500 1 THR A 116 46.45 -77.32 REMARK 500 1 HIS A 130 23.69 -140.91 REMARK 500 2 ALA A 26 148.75 75.42 REMARK 500 2 PRO A 29 154.32 -48.19 REMARK 500 2 SER A 35 159.57 176.90 REMARK 500 2 ASP A 72 70.06 -151.98 REMARK 500 2 PRO A 85 -1.33 9.42 REMARK 500 2 LEU A 128 37.69 -86.17 REMARK 500 3 CYS A 7 143.21 -170.57 REMARK 500 3 GLN A 10 -169.53 -125.34 REMARK 500 3 ARG A 25 -167.23 -116.17 REMARK 500 3 ASP A 31 -63.34 -128.94 REMARK 500 3 SER A 74 168.54 67.24 REMARK 500 3 TYR A 84 170.07 -59.06 REMARK 500 3 PRO A 85 -0.53 11.96 REMARK 500 3 ASN A 103 -53.83 75.80 REMARK 500 3 LYS A 115 84.15 64.38 REMARK 500 3 GLU A 120 -82.18 -159.45 REMARK 500 3 LYS A 121 131.40 69.06 REMARK 500 4 GLU A 23 48.44 -90.51 REMARK 500 4 ALA A 26 164.16 68.92 REMARK 500 4 ASP A 72 76.31 -152.35 REMARK 500 4 LEU A 80 -170.06 50.74 REMARK 500 4 ASN A 103 18.16 59.46 REMARK 500 4 LYS A 121 17.84 59.08 REMARK 500 4 HIS A 132 -10.23 -157.01 REMARK 500 4 HIS A 133 -80.10 69.84 REMARK 500 4 HIS A 134 -51.26 -169.02 REMARK 500 5 MET A 3 85.74 64.89 REMARK 500 5 SER A 5 -175.96 64.73 REMARK 500 5 GLN A 8 168.11 68.14 REMARK 500 5 GLU A 12 -88.18 -88.83 REMARK 500 5 THR A 14 129.33 73.53 REMARK 500 5 ALA A 26 79.07 -119.58 REMARK 500 5 ASP A 31 84.03 69.20 REMARK 500 5 ARG A 54 -62.74 -93.21 REMARK 500 5 ASP A 72 78.59 -161.29 REMARK 500 5 SER A 114 172.55 68.86 REMARK 500 5 GLU A 120 -71.50 -152.67 REMARK 500 5 LYS A 121 107.53 61.21 REMARK 500 5 GLU A 123 122.94 72.31 REMARK 500 5 LYS A 126 72.17 -108.70 REMARK 500 5 SER A 127 100.03 -173.40 REMARK 500 6 GLN A 9 -95.96 -129.82 REMARK 500 REMARK 500 THIS ENTRY HAS 184 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 84 PRO A 85 2 -148.34 REMARK 500 TYR A 84 PRO A 85 3 -149.33 REMARK 500 TYR A 84 PRO A 85 6 -149.38 REMARK 500 TYR A 84 PRO A 85 7 -148.48 REMARK 500 TYR A 84 PRO A 85 9 -148.43 REMARK 500 TYR A 84 PRO A 85 12 -142.16 REMARK 500 TYR A 84 PRO A 85 13 -148.10 REMARK 500 TYR A 84 PRO A 85 19 -138.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15211 RELATED DB: BMRB REMARK 900 RELATED ID: SR500A RELATED DB: TARGETDB DBREF 2JOZ A 2 127 UNP P54945 YXEF_BACSU 19 144 SEQADV 2JOZ MET A 1 UNP P54945 INITIATING METHIONINE SEQADV 2JOZ LEU A 128 UNP P54945 CLONING ARTIFACT SEQADV 2JOZ GLU A 129 UNP P54945 CLONING ARTIFACT SEQADV 2JOZ HIS A 130 UNP P54945 EXPRESSION TAG SEQADV 2JOZ HIS A 131 UNP P54945 EXPRESSION TAG SEQADV 2JOZ HIS A 132 UNP P54945 EXPRESSION TAG SEQADV 2JOZ HIS A 133 UNP P54945 EXPRESSION TAG SEQADV 2JOZ HIS A 134 UNP P54945 EXPRESSION TAG SEQADV 2JOZ HIS A 135 UNP P54945 EXPRESSION TAG SEQRES 1 A 135 MET ILE MET VAL SER GLY CYS GLN GLN GLN LYS GLU GLU SEQRES 2 A 135 THR PRO PHE TYR TYR GLY THR TRP ASP GLU GLY ARG ALA SEQRES 3 A 135 PRO GLY PRO THR ASP GLY VAL LYS SER ALA THR VAL THR SEQRES 4 A 135 PHE THR GLU ASP GLU VAL VAL GLU THR GLU VAL MET GLU SEQRES 5 A 135 GLY ARG GLY GLU VAL GLN LEU PRO PHE MET ALA TYR LYS SEQRES 6 A 135 VAL ILE SER GLN SER THR ASP GLY SER ILE GLU ILE GLN SEQRES 7 A 135 TYR LEU GLY PRO TYR TYR PRO LEU LYS SER THR LEU LYS SEQRES 8 A 135 ARG GLY GLU ASN GLY THR LEU ILE TRP GLU GLN ASN GLY SEQRES 9 A 135 GLN ARG LYS THR MET THR ARG ILE GLU SER LYS THR GLY SEQRES 10 A 135 ARG GLU GLU LYS ASP GLU LYS SER LYS SER LEU GLU HIS SEQRES 11 A 135 HIS HIS HIS HIS HIS SHEET 1 A10 GLY A 55 GLN A 58 0 SHEET 2 A10 GLU A 44 MET A 51 -1 N MET A 51 O GLY A 55 SHEET 3 A10 MET A 62 SER A 68 -1 O MET A 62 N VAL A 45 SHEET 4 A10 SER A 74 LEU A 80 -1 O GLU A 76 N SER A 68 SHEET 5 A10 LYS A 87 ARG A 92 -1 O SER A 88 N ILE A 77 SHEET 6 A10 LEU A 98 GLN A 102 -1 O ILE A 99 N LYS A 91 SHEET 7 A10 GLN A 105 ARG A 111 -1 O MET A 109 N LEU A 98 SHEET 8 A10 GLY A 19 ASP A 22 -1 N ASP A 22 O THR A 110 SHEET 9 A10 SER A 35 PHE A 40 -1 O VAL A 38 N TRP A 21 SHEET 10 A10 GLU A 44 MET A 51 -1 O THR A 48 N THR A 37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1