HEADER TRANSCRIPTION 03-MAY-07 2JPB TITLE SOLUTION STRUCTURE OF OMPR-C DNA BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN OMPR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 136-239; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: OMPR, KMT, OMPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21 KEYWDS DNA BINDING PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, INTEGRATED CENTER FOR STRUCTURE AND FUNCTION INNOVATION, KEYWDS 3 ISFI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.LIAO,L.KENNEY,W.LIAO,INTEGRATED CENTER FOR STRUCTURE AND FUNCTION AUTHOR 2 INNOVATION (ISFI) REVDAT 4 20-DEC-23 2JPB 1 REMARK REVDAT 3 09-MAR-22 2JPB 1 REMARK REVDAT 2 24-FEB-09 2JPB 1 VERSN REVDAT 1 12-JUN-07 2JPB 0 JRNL AUTH X.LIAO,L.KENNEY,W.LIAO JRNL TITL SOLUTION STRUCTURE OF OMPR-C DNA BINDING PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA, DYANA REMARK 3 AUTHORS : GUNTERT, BRAUN AND WUTHRICH (DYANA), GUNTERT, REMARK 3 BRAUN AND WUTHRICH (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JPB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000100119. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-10% 13C; U-99% 15N] OMPR REMARK 210 -C, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 201 H ILE A 205 1.50 REMARK 500 H PHE A 140 O PHE A 143 1.51 REMARK 500 O PHE A 166 H LYS A 170 1.54 REMARK 500 O SER A 163 H ALA A 167 1.55 REMARK 500 O ILE A 205 H ARG A 209 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 137 173.89 -57.54 REMARK 500 1 LYS A 142 -47.56 -134.71 REMARK 500 1 ASN A 146 119.85 -160.04 REMARK 500 1 GLU A 155 -23.66 88.93 REMARK 500 1 ASP A 156 -31.72 156.71 REMARK 500 1 GLU A 157 106.00 -49.55 REMARK 500 1 ARG A 177 31.34 73.81 REMARK 500 1 GLU A 193 162.40 -47.01 REMARK 500 1 TYR A 194 82.85 -61.92 REMARK 500 1 SER A 195 21.55 -142.44 REMARK 500 1 ALA A 196 61.43 -114.82 REMARK 500 1 MET A 197 -45.17 -165.58 REMARK 500 1 ILE A 201 -46.62 -135.47 REMARK 500 1 ALA A 217 -46.51 -145.08 REMARK 500 1 PRO A 219 -159.49 -74.94 REMARK 500 1 ARG A 220 -51.90 -155.69 REMARK 500 1 LEU A 228 -81.58 -87.07 REMARK 500 1 ASP A 235 -54.35 81.65 REMARK 500 1 SER A 237 -62.75 -144.23 REMARK 500 1 LYS A 238 118.61 -161.07 REMARK 500 2 VAL A 137 -179.97 50.58 REMARK 500 2 ARG A 150 43.24 71.47 REMARK 500 2 GLU A 165 -71.33 -62.78 REMARK 500 2 ARG A 177 50.13 72.67 REMARK 500 2 LEU A 180 112.44 -162.31 REMARK 500 2 ARG A 190 98.48 53.94 REMARK 500 2 ARG A 192 -59.64 70.63 REMARK 500 2 GLU A 193 178.12 -49.44 REMARK 500 2 TYR A 194 69.56 -68.28 REMARK 500 2 ALA A 196 -47.22 -132.06 REMARK 500 2 MET A 197 46.60 -84.95 REMARK 500 2 ARG A 199 -62.21 -174.79 REMARK 500 2 SER A 200 165.77 167.91 REMARK 500 2 GLU A 213 -147.73 -114.74 REMARK 500 2 GLU A 214 -63.40 -172.35 REMARK 500 2 ASP A 215 -52.25 163.45 REMARK 500 2 HIS A 218 143.67 61.33 REMARK 500 2 PRO A 219 -159.63 -74.96 REMARK 500 2 ARG A 220 -45.35 163.56 REMARK 500 2 LEU A 228 -80.23 -105.63 REMARK 500 2 ASP A 235 92.57 46.09 REMARK 500 3 VAL A 137 -175.41 49.46 REMARK 500 3 GLU A 157 93.00 -163.46 REMARK 500 3 GLU A 165 -71.44 -61.47 REMARK 500 3 ARG A 177 -51.52 81.51 REMARK 500 3 ARG A 190 76.92 -63.90 REMARK 500 3 ARG A 192 50.00 -154.96 REMARK 500 3 ALA A 196 -64.16 -154.42 REMARK 500 3 MET A 197 48.35 -86.39 REMARK 500 3 ARG A 199 -69.19 -146.32 REMARK 500 REMARK 500 THIS ENTRY HAS 370 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2JPB A 136 239 UNP P0AA16 OMPR_ECOLI 136 239 SEQRES 1 A 104 ALA VAL ILE ALA PHE GLY LYS PHE LYS LEU ASN LEU GLY SEQRES 2 A 104 THR ARG GLU MET PHE ARG GLU ASP GLU PRO MET PRO LEU SEQRES 3 A 104 THR SER GLY GLU PHE ALA VAL LEU LYS ALA LEU VAL SER SEQRES 4 A 104 HIS PRO ARG GLU PRO LEU SER ARG ASP LYS LEU MET ASN SEQRES 5 A 104 LEU ALA ARG GLY ARG GLU TYR SER ALA MET GLU ARG SER SEQRES 6 A 104 ILE ASP VAL GLN ILE SER ARG LEU ARG ARG MET VAL GLU SEQRES 7 A 104 GLU ASP PRO ALA HIS PRO ARG TYR ILE GLN THR VAL TRP SEQRES 8 A 104 GLY LEU GLY TYR VAL PHE VAL PRO ASP GLY SER LYS ALA HELIX 1 1 THR A 162 HIS A 175 1 14 HELIX 2 2 SER A 181 ARG A 190 1 10 HELIX 3 3 ILE A 201 GLU A 213 1 13 SHEET 1 A 4 ILE A 138 ALA A 139 0 SHEET 2 A 4 PHE A 143 LEU A 145 -1 O LEU A 145 N ILE A 138 SHEET 3 A 4 GLU A 151 ARG A 154 -1 O PHE A 153 N LYS A 144 SHEET 4 A 4 GLU A 157 PRO A 160 -1 O MET A 159 N MET A 152 SHEET 1 B 2 GLN A 223 THR A 224 0 SHEET 2 B 2 TYR A 230 VAL A 231 -1 O VAL A 231 N GLN A 223 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1