data_2JPY # _entry.id 2JPY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JPY pdb_00002jpy 10.2210/pdb2jpy/pdb RCSB RCSB100142 ? ? WWPDB D_1000100142 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-09 4 'Structure model' 1 3 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site 8 4 'Structure model' chem_comp_atom 9 4 'Structure model' chem_comp_bond 10 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 9 4 'Structure model' '_pdbx_database_status.deposit_site' # _pdbx_database_status.deposit_site RCSB _pdbx_database_status.entry_id 2JPY _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-05-24 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2JQ0 PHYLLOSEPTIN-1 unspecified PDB 2JQ1 PHYLLOSEPTIN-3 unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Resende, J.M.' 1 'Mendonca Moraes, C.' 2 'Almeida, F.C.L.' 3 'Prates, M.V.' 4 'Cesar, A.' 5 'Valente, A.' 6 'Bemquerer, M.P.' 7 'Pilo-Veloso, D.' 8 'Bechinger, B.' 9 # _citation.id primary _citation.title ;Solution NMR structures of the antimicrobial peptides phylloseptin-1, -2, and -3 and biological activity: The role of charges and hydrogen bonding interactions in stabilizing helix conformations ; _citation.journal_abbrev Peptides _citation.journal_volume 29 _citation.page_first 1633 _citation.page_last 1644 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 0196-9781 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18656510 _citation.pdbx_database_id_DOI 10.1016/j.peptides.2008.06.022 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Resende, J.M.' 1 ? primary 'Moraes, C.M.' 2 ? primary 'Prates, M.V.' 3 ? primary 'Cesar, A.' 4 ? primary 'Almeida, F.C.' 5 ? primary 'Mundim, N.C.' 6 ? primary 'Valente, A.P.' 7 ? primary 'Bemquerer, M.P.' 8 ? primary 'Pilo-Veloso, D.' 9 ? primary 'Bechinger, B.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Phylloseptin-2 protein' _entity.formula_weight 2117.494 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'FLSLIPHAINAVSTLVHHF(NH2)' _entity_poly.pdbx_seq_one_letter_code_can FLSLIPHAINAVSTLVHHFX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 LEU n 1 3 SER n 1 4 LEU n 1 5 ILE n 1 6 PRO n 1 7 HIS n 1 8 ALA n 1 9 ILE n 1 10 ASN n 1 11 ALA n 1 12 VAL n 1 13 SER n 1 14 THR n 1 15 LEU n 1 16 VAL n 1 17 HIS n 1 18 HIS n 1 19 PHE n 1 20 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;The peptide was synthesized by solid-phase synthesis using Fmoc chemistry. The peptide is an antimicrobial peptide that is naturally found from the skin secretion of Phyllomedusa hypochondrialis (Orange-legged leaf frog), a frog species found in Brazilian southeast Atlantic Forest. ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 1 1 PHE PHE A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 NH2 20 20 20 NH2 NH2 A . n # _cell.entry_id 2JPY _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2JPY _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2JPY _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JPY _struct.title Phylloseptin-2 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JPY _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text 'alpha helix, amphipathic character, C-Terminal Carboxyamidation, ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q0VZ43_PHYHY _struct_ref.pdbx_db_accession Q0VZ43 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code FLSLIPHAINAVSTLVHHF _struct_ref.pdbx_align_begin 47 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JPY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 19 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q0VZ43 _struct_ref_seq.db_align_beg 47 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 65 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 19 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id LEU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 4 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id PHE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 19 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LEU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 4 _struct_conf.end_auth_comp_id PHE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 19 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id PHE _struct_conn.ptnr1_label_seq_id 19 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id NH2 _struct_conn.ptnr2_label_seq_id 20 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PHE _struct_conn.ptnr1_auth_seq_id 19 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NH2 _struct_conn.ptnr2_auth_seq_id 20 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.306 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NH2 _struct_site.pdbx_auth_seq_id 20 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE NH2 A 20' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 THR A 14 ? THR A 14 . ? 1_555 ? 2 AC1 3 LEU A 15 ? LEU A 15 . ? 1_555 ? 3 AC1 3 HIS A 17 ? HIS A 17 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -177.20 25.13 2 1 SER A 13 ? ? -49.10 -16.38 3 2 LEU A 2 ? ? 51.94 -97.83 4 2 SER A 3 ? ? 56.28 179.81 5 2 LEU A 4 ? ? -82.52 40.14 6 2 SER A 13 ? ? -46.16 -15.61 7 3 SER A 3 ? ? -175.97 -18.27 8 3 SER A 13 ? ? -45.05 -18.24 9 4 SER A 3 ? ? -60.66 -141.94 10 4 LEU A 4 ? ? -83.80 34.46 11 5 SER A 3 ? ? 57.10 18.93 12 5 SER A 13 ? ? -46.75 -15.17 13 6 SER A 3 ? ? -177.92 -8.50 14 7 SER A 3 ? ? 178.86 1.75 15 7 SER A 13 ? ? -50.00 -19.87 16 8 LEU A 2 ? ? -59.31 -175.87 17 8 SER A 13 ? ? -46.49 -16.56 18 8 HIS A 18 ? ? -93.17 -61.97 19 9 LEU A 2 ? ? 57.04 122.54 20 9 SER A 3 ? ? -178.16 -3.54 21 10 LEU A 2 ? ? 45.54 -138.77 # _pdbx_nmr_ensemble.entry_id 2JPY _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2JPY _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.contents '4.0 mM Phylloseptin-2, trifluoroethanol/water (60%/40%)' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system 'trifluoroethanol/water (60%/40%)' # _pdbx_nmr_exptl_sample.component Phylloseptin-2 _pdbx_nmr_exptl_sample.concentration 4.0 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-13C HSQC' 1 4 1 '2D 1H-15N HSQC' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2JPY _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 194 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 116 _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count 32 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 46 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2JPY _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection XwinNMR ? 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 2 'Johnson, One Moon Scientific' 'chemical shift assignment' NMRView 5.0.4 3 'Johnson, One Moon Scientific' 'data analysis' NMRView 5.0.4 4 'Schwieters, Kuszewski, Tjandra and Clore' 'geometry optimization' 'X-PLOR NIH' 2.17.0 5 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' 2.17.0 6 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' 2.17.0 7 'Koradi, Billeter and Wuthrich' 'data analysis' MOLMOL 2k.2 8 'Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton' 'data analysis' Procheck 3.5.4 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 HIS N N N N 31 HIS CA C N S 32 HIS C C N N 33 HIS O O N N 34 HIS CB C N N 35 HIS CG C Y N 36 HIS ND1 N Y N 37 HIS CD2 C Y N 38 HIS CE1 C Y N 39 HIS NE2 N Y N 40 HIS OXT O N N 41 HIS H H N N 42 HIS H2 H N N 43 HIS HA H N N 44 HIS HB2 H N N 45 HIS HB3 H N N 46 HIS HD1 H N N 47 HIS HD2 H N N 48 HIS HE1 H N N 49 HIS HE2 H N N 50 HIS HXT H N N 51 ILE N N N N 52 ILE CA C N S 53 ILE C C N N 54 ILE O O N N 55 ILE CB C N S 56 ILE CG1 C N N 57 ILE CG2 C N N 58 ILE CD1 C N N 59 ILE OXT O N N 60 ILE H H N N 61 ILE H2 H N N 62 ILE HA H N N 63 ILE HB H N N 64 ILE HG12 H N N 65 ILE HG13 H N N 66 ILE HG21 H N N 67 ILE HG22 H N N 68 ILE HG23 H N N 69 ILE HD11 H N N 70 ILE HD12 H N N 71 ILE HD13 H N N 72 ILE HXT H N N 73 LEU N N N N 74 LEU CA C N S 75 LEU C C N N 76 LEU O O N N 77 LEU CB C N N 78 LEU CG C N N 79 LEU CD1 C N N 80 LEU CD2 C N N 81 LEU OXT O N N 82 LEU H H N N 83 LEU H2 H N N 84 LEU HA H N N 85 LEU HB2 H N N 86 LEU HB3 H N N 87 LEU HG H N N 88 LEU HD11 H N N 89 LEU HD12 H N N 90 LEU HD13 H N N 91 LEU HD21 H N N 92 LEU HD22 H N N 93 LEU HD23 H N N 94 LEU HXT H N N 95 NH2 N N N N 96 NH2 HN1 H N N 97 NH2 HN2 H N N 98 PHE N N N N 99 PHE CA C N S 100 PHE C C N N 101 PHE O O N N 102 PHE CB C N N 103 PHE CG C Y N 104 PHE CD1 C Y N 105 PHE CD2 C Y N 106 PHE CE1 C Y N 107 PHE CE2 C Y N 108 PHE CZ C Y N 109 PHE OXT O N N 110 PHE H H N N 111 PHE H2 H N N 112 PHE HA H N N 113 PHE HB2 H N N 114 PHE HB3 H N N 115 PHE HD1 H N N 116 PHE HD2 H N N 117 PHE HE1 H N N 118 PHE HE2 H N N 119 PHE HZ H N N 120 PHE HXT H N N 121 PRO N N N N 122 PRO CA C N S 123 PRO C C N N 124 PRO O O N N 125 PRO CB C N N 126 PRO CG C N N 127 PRO CD C N N 128 PRO OXT O N N 129 PRO H H N N 130 PRO HA H N N 131 PRO HB2 H N N 132 PRO HB3 H N N 133 PRO HG2 H N N 134 PRO HG3 H N N 135 PRO HD2 H N N 136 PRO HD3 H N N 137 PRO HXT H N N 138 SER N N N N 139 SER CA C N S 140 SER C C N N 141 SER O O N N 142 SER CB C N N 143 SER OG O N N 144 SER OXT O N N 145 SER H H N N 146 SER H2 H N N 147 SER HA H N N 148 SER HB2 H N N 149 SER HB3 H N N 150 SER HG H N N 151 SER HXT H N N 152 THR N N N N 153 THR CA C N S 154 THR C C N N 155 THR O O N N 156 THR CB C N R 157 THR OG1 O N N 158 THR CG2 C N N 159 THR OXT O N N 160 THR H H N N 161 THR H2 H N N 162 THR HA H N N 163 THR HB H N N 164 THR HG1 H N N 165 THR HG21 H N N 166 THR HG22 H N N 167 THR HG23 H N N 168 THR HXT H N N 169 VAL N N N N 170 VAL CA C N S 171 VAL C C N N 172 VAL O O N N 173 VAL CB C N N 174 VAL CG1 C N N 175 VAL CG2 C N N 176 VAL OXT O N N 177 VAL H H N N 178 VAL H2 H N N 179 VAL HA H N N 180 VAL HB H N N 181 VAL HG11 H N N 182 VAL HG12 H N N 183 VAL HG13 H N N 184 VAL HG21 H N N 185 VAL HG22 H N N 186 VAL HG23 H N N 187 VAL HXT H N N 188 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 HIS N CA sing N N 29 HIS N H sing N N 30 HIS N H2 sing N N 31 HIS CA C sing N N 32 HIS CA CB sing N N 33 HIS CA HA sing N N 34 HIS C O doub N N 35 HIS C OXT sing N N 36 HIS CB CG sing N N 37 HIS CB HB2 sing N N 38 HIS CB HB3 sing N N 39 HIS CG ND1 sing Y N 40 HIS CG CD2 doub Y N 41 HIS ND1 CE1 doub Y N 42 HIS ND1 HD1 sing N N 43 HIS CD2 NE2 sing Y N 44 HIS CD2 HD2 sing N N 45 HIS CE1 NE2 sing Y N 46 HIS CE1 HE1 sing N N 47 HIS NE2 HE2 sing N N 48 HIS OXT HXT sing N N 49 ILE N CA sing N N 50 ILE N H sing N N 51 ILE N H2 sing N N 52 ILE CA C sing N N 53 ILE CA CB sing N N 54 ILE CA HA sing N N 55 ILE C O doub N N 56 ILE C OXT sing N N 57 ILE CB CG1 sing N N 58 ILE CB CG2 sing N N 59 ILE CB HB sing N N 60 ILE CG1 CD1 sing N N 61 ILE CG1 HG12 sing N N 62 ILE CG1 HG13 sing N N 63 ILE CG2 HG21 sing N N 64 ILE CG2 HG22 sing N N 65 ILE CG2 HG23 sing N N 66 ILE CD1 HD11 sing N N 67 ILE CD1 HD12 sing N N 68 ILE CD1 HD13 sing N N 69 ILE OXT HXT sing N N 70 LEU N CA sing N N 71 LEU N H sing N N 72 LEU N H2 sing N N 73 LEU CA C sing N N 74 LEU CA CB sing N N 75 LEU CA HA sing N N 76 LEU C O doub N N 77 LEU C OXT sing N N 78 LEU CB CG sing N N 79 LEU CB HB2 sing N N 80 LEU CB HB3 sing N N 81 LEU CG CD1 sing N N 82 LEU CG CD2 sing N N 83 LEU CG HG sing N N 84 LEU CD1 HD11 sing N N 85 LEU CD1 HD12 sing N N 86 LEU CD1 HD13 sing N N 87 LEU CD2 HD21 sing N N 88 LEU CD2 HD22 sing N N 89 LEU CD2 HD23 sing N N 90 LEU OXT HXT sing N N 91 NH2 N HN1 sing N N 92 NH2 N HN2 sing N N 93 PHE N CA sing N N 94 PHE N H sing N N 95 PHE N H2 sing N N 96 PHE CA C sing N N 97 PHE CA CB sing N N 98 PHE CA HA sing N N 99 PHE C O doub N N 100 PHE C OXT sing N N 101 PHE CB CG sing N N 102 PHE CB HB2 sing N N 103 PHE CB HB3 sing N N 104 PHE CG CD1 doub Y N 105 PHE CG CD2 sing Y N 106 PHE CD1 CE1 sing Y N 107 PHE CD1 HD1 sing N N 108 PHE CD2 CE2 doub Y N 109 PHE CD2 HD2 sing N N 110 PHE CE1 CZ doub Y N 111 PHE CE1 HE1 sing N N 112 PHE CE2 CZ sing Y N 113 PHE CE2 HE2 sing N N 114 PHE CZ HZ sing N N 115 PHE OXT HXT sing N N 116 PRO N CA sing N N 117 PRO N CD sing N N 118 PRO N H sing N N 119 PRO CA C sing N N 120 PRO CA CB sing N N 121 PRO CA HA sing N N 122 PRO C O doub N N 123 PRO C OXT sing N N 124 PRO CB CG sing N N 125 PRO CB HB2 sing N N 126 PRO CB HB3 sing N N 127 PRO CG CD sing N N 128 PRO CG HG2 sing N N 129 PRO CG HG3 sing N N 130 PRO CD HD2 sing N N 131 PRO CD HD3 sing N N 132 PRO OXT HXT sing N N 133 SER N CA sing N N 134 SER N H sing N N 135 SER N H2 sing N N 136 SER CA C sing N N 137 SER CA CB sing N N 138 SER CA HA sing N N 139 SER C O doub N N 140 SER C OXT sing N N 141 SER CB OG sing N N 142 SER CB HB2 sing N N 143 SER CB HB3 sing N N 144 SER OG HG sing N N 145 SER OXT HXT sing N N 146 THR N CA sing N N 147 THR N H sing N N 148 THR N H2 sing N N 149 THR CA C sing N N 150 THR CA CB sing N N 151 THR CA HA sing N N 152 THR C O doub N N 153 THR C OXT sing N N 154 THR CB OG1 sing N N 155 THR CB CG2 sing N N 156 THR CB HB sing N N 157 THR OG1 HG1 sing N N 158 THR CG2 HG21 sing N N 159 THR CG2 HG22 sing N N 160 THR CG2 HG23 sing N N 161 THR OXT HXT sing N N 162 VAL N CA sing N N 163 VAL N H sing N N 164 VAL N H2 sing N N 165 VAL CA C sing N N 166 VAL CA CB sing N N 167 VAL CA HA sing N N 168 VAL C O doub N N 169 VAL C OXT sing N N 170 VAL CB CG1 sing N N 171 VAL CB CG2 sing N N 172 VAL CB HB sing N N 173 VAL CG1 HG11 sing N N 174 VAL CG1 HG12 sing N N 175 VAL CG1 HG13 sing N N 176 VAL CG2 HG21 sing N N 177 VAL CG2 HG22 sing N N 178 VAL CG2 HG23 sing N N 179 VAL OXT HXT sing N N 180 # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model 'AVANCE DRX' _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance DRX' # _atom_sites.entry_id 2JPY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_