HEADER STRUCTURAL GENOMICS 29-MAY-07 2JQ5 TITLE SOLUTION STRUCTURE OF RPA3114, A SEC-C MOTIF CONTAINING PROTEIN FROM TITLE 2 RHODOPSEUDOMONAS PALUSTRIS; NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET RPT5 / ONTARIO CENTER FOR STRUCTURAL PROTEOMICS TARGET RP3097 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEC-C MOTIF; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 1076; SOURCE 4 GENE: RPA3114; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 (GOLD MAGIC); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P11 KEYWDS SEC-C MOTIF CONTAINING PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS, OCSP EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,J.LUKIN,A.YEE,A.GUTMANAS,M.KARRA,A.SEMESI,C.H.ARROWSMITH, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG),ONTARIO CENTRE FOR AUTHOR 3 STRUCTURAL PROTEOMICS (OCSP) REVDAT 6 08-MAY-24 2JQ5 1 REMARK REVDAT 5 20-DEC-23 2JQ5 1 REMARK LINK REVDAT 4 19-FEB-20 2JQ5 1 REMARK REVDAT 3 18-JAN-12 2JQ5 1 REMARK VERSN REVDAT 2 24-FEB-09 2JQ5 1 VERSN REVDAT 1 26-JUN-07 2JQ5 0 JRNL AUTH A.LEMAK,J.LUKIN,A.YEE,A.GUTMANAS,M.KARRA,A.SEMESI, JRNL AUTH 2 C.H.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF A SE-C MOTIF CONTAINING PROTEIN FROM JRNL TITL 2 RHODOPSEUDOMONAS PALUSTRIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LEMAK,A.GUTMANAS,S.CHITAYAT,M.KARRA,C.FARES,M.SUNNERHAGEN, REMARK 1 AUTH 2 C.H.ARROWSMITH REMARK 1 TITL A NOVEL STRATEGY FOR NMR RESONANCE ASSIGNMENT AND PROTEIN REMARK 1 TITL 2 STRUCTURE DETERMINATION. REMARK 1 REF J.BIOMOL.NMR V. 49 27 2011 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 21161328 REMARK 1 DOI 10.1007/S10858-010-9458-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CNS REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JQ5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000100149. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 300 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] RPA3114, REMARK 210 10 MM [U-99% 2H] TRIS, 10 MM [U- REMARK 210 99% 2H] DTT, 300 MM SODIUM REMARK 210 CHLORIDE, 0.1 % SODIUM AZIDE, 1 REMARK 210 MM BENZAMIDINE, 10 UM ZNS04, 95% REMARK 210 H2O/5% D2O; 0.5 MM [U-13C; U-15N] REMARK 210 RPA3114, 10 MM [U-99% 2H] TRIS, REMARK 210 10 MM [U-99% 2H] DTT, 300 MM REMARK 210 SODIUM CHLORIDE, 0.1 % SODIUM REMARK 210 AZIDE, 1 MM BENZAMIDINE, 10 UM REMARK 210 ZNS04, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HNCO; 3D H(CCO)NH; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-TOCSY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, TALOS, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 4 34.14 -79.67 REMARK 500 1 CYS A 14 -84.11 -98.91 REMARK 500 1 LYS A 42 23.82 43.06 REMARK 500 1 LEU A 74 -61.15 -92.62 REMARK 500 2 SER A 7 115.40 -163.81 REMARK 500 2 CYS A 14 -80.38 -101.90 REMARK 500 2 ALA A 26 -2.29 68.36 REMARK 500 2 LYS A 42 23.08 44.55 REMARK 500 3 VAL A 4 78.05 -68.98 REMARK 500 3 SER A 7 129.60 -170.88 REMARK 500 3 CYS A 14 -82.97 -101.50 REMARK 500 3 LYS A 42 28.63 42.99 REMARK 500 3 LYS A 84 54.51 -110.53 REMARK 500 4 ASN A 2 -156.33 -105.49 REMARK 500 4 VAL A 4 76.53 -69.66 REMARK 500 4 CYS A 14 -76.89 -105.27 REMARK 500 4 LYS A 42 23.93 47.99 REMARK 500 4 ASP A 43 78.54 -101.38 REMARK 500 4 LYS A 84 73.21 -112.82 REMARK 500 5 SER A 7 -42.41 -171.64 REMARK 500 5 CYS A 14 -72.29 -73.66 REMARK 500 5 ALA A 26 12.01 59.85 REMARK 500 5 ASP A 43 79.73 -102.43 REMARK 500 5 LYS A 84 68.55 -110.18 REMARK 500 5 SER A 122 -64.62 -102.17 REMARK 500 6 ASN A 2 -155.37 -89.51 REMARK 500 6 CYS A 5 119.15 -166.40 REMARK 500 6 SER A 7 -31.78 -148.86 REMARK 500 6 CYS A 14 -87.97 -95.82 REMARK 500 6 ASP A 43 74.77 -102.92 REMARK 500 7 VAL A 4 77.69 -66.31 REMARK 500 7 SER A 7 -46.72 -175.65 REMARK 500 7 CYS A 14 -79.96 -97.84 REMARK 500 7 LYS A 42 21.98 47.97 REMARK 500 7 ASP A 43 57.36 -96.24 REMARK 500 7 ALA A 126 107.86 -58.91 REMARK 500 8 VAL A 4 81.59 -61.01 REMARK 500 8 CYS A 14 -77.63 -95.48 REMARK 500 8 LYS A 42 24.21 44.87 REMARK 500 8 LYS A 84 58.91 -102.64 REMARK 500 9 ASN A 2 -169.80 -106.62 REMARK 500 9 VAL A 4 38.03 -75.99 REMARK 500 9 CYS A 5 105.70 -168.62 REMARK 500 9 THR A 10 -178.12 -63.63 REMARK 500 9 CYS A 14 -80.59 -97.85 REMARK 500 9 ARG A 21 19.10 59.43 REMARK 500 9 LYS A 42 12.89 51.22 REMARK 500 9 LEU A 74 -62.61 -92.17 REMARK 500 9 LYS A 84 50.59 -109.97 REMARK 500 10 VAL A 4 88.53 -56.40 REMARK 500 REMARK 500 THIS ENTRY HAS 116 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 129 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 3 SG REMARK 620 2 CYS A 5 SG 109.6 REMARK 620 3 CYS A 14 SG 110.2 108.3 REMARK 620 4 CYS A 15 SG 109.5 109.9 109.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 129 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15270 RELATED DB: BMRB REMARK 900 RELATED ID: RPT5 RELATED DB: TARGETDB DBREF 2JQ5 A 1 128 UNP Q6N568 Q6N568_RHOPA 1 128 SEQRES 1 A 128 MET ASN CYS VAL CYS GLY SER GLY LYS THR TYR ASP ASP SEQRES 2 A 128 CYS CYS GLY PRO LEU LEU ALA ARG THR ARG SER ALA ALA SEQRES 3 A 128 SER PRO GLU ALA LEU MET ARG SER ARG TYR ALA ALA TYR SEQRES 4 A 128 ALA LEU LYS ASP PHE ASP TYR ILE VAL GLU THR THR ASP SEQRES 5 A 128 PRO GLU ARG ARG ASP LEU PHE ASP HIS ASP VAL ASN ARG SEQRES 6 A 128 ALA TRP MET GLU GLU SER ASP PHE LEU GLU LEU ARG VAL SEQRES 7 A 128 LEU GLY SER SER GLU LYS GLY SER ARG GLY THR VAL GLU SEQRES 8 A 128 PHE ILE ALA ARG PHE ARG ARG GLY GLY GLY PRO GLU GLN SEQRES 9 A 128 SER HIS HIS GLU ARG SER GLN PHE ARG LYS ALA ARG GLY SEQRES 10 A 128 ARG TRP TYR PHE SER GLU GLY GLU ALA VAL ASP HET ZN A 129 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 THR A 10 ALA A 20 1 11 HELIX 2 2 SER A 27 LEU A 41 1 15 HELIX 3 3 ASP A 43 THR A 50 1 8 HELIX 4 4 ASP A 52 ASP A 57 1 6 HELIX 5 5 ASP A 60 GLU A 70 1 11 SHEET 1 A 4 SER A 71 LYS A 84 0 SHEET 2 A 4 ARG A 87 ARG A 98 -1 O ARG A 97 N ASP A 72 SHEET 3 A 4 GLU A 103 ALA A 115 -1 O GLN A 104 N PHE A 96 SHEET 4 A 4 ARG A 118 GLU A 125 -1 O ARG A 118 N ALA A 115 LINK SG CYS A 3 ZN ZN A 129 1555 1555 2.35 LINK SG CYS A 5 ZN ZN A 129 1555 1555 2.35 LINK SG CYS A 14 ZN ZN A 129 1555 1555 2.34 LINK SG CYS A 15 ZN ZN A 129 1555 1555 2.36 SITE 1 AC1 4 CYS A 3 CYS A 5 CYS A 14 CYS A 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1