HEADER STRUCTURAL GENOMICS 05-JUN-07 2JQN TITLE SOLUTION NMR STRUCTURE OF CC0527 FROM CAULOBACTER CRESCENTUS. TITLE 2 NORTHEAST STRUCTURAL GENOMICS TARGET CCR55 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES; SOURCE 3 ORGANISM_TAXID: 155892; SOURCE 4 GENE: CC0527; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: CCR55-21.3 KEYWDS SOLUTION NMR STRUCTURE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.M.ARAMINI,P.ROSSI,H.N.B.MOSELEY,D.WANG,C.NWOSU,K.CUNNINGHAM,L.MA, AUTHOR 2 R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 20-DEC-23 2JQN 1 REMARK REVDAT 4 14-JUN-23 2JQN 1 REMARK REVDAT 3 19-FEB-20 2JQN 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JQN 1 VERSN REVDAT 1 03-JUL-07 2JQN 0 JRNL AUTH J.M.ARAMINI,P.ROSSI,H.N.B.MOSELEY,D.WANG,C.NWOSU, JRNL AUTH 2 K.CUNNINGHAM,L.MA,R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA, JRNL AUTH 3 T.B.ACTON,B.ROST,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF CC0527 FROM CAULOBACTER CRESCENTUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, X-PLOR NIH 2.11.2, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH), BRUNGER, ADAMS, REMARK 3 CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1164 CONFORMATIONALLY-RESTRICTING NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 108 DIHEDRAL ANGLE CONSTRAINTS, AND 66 HYDROGEN REMARK 3 BOND CONSTRAINTS (11.7 CONSTRAINTS PER RESIDUE, 3.6 LONG RANGE REMARK 3 CONSTRAINTS PER RESIDUE, COMPUTED FOR RESIDUES 1 TO 116 BY PSVS REMARK 3 1.3). STRUCTURE DETERMINATION WAS PERFORMED ITERATIVELY USING REMARK 3 AUTOSTRUCTURE (XPLOR-NIH). AFTER A FINAL XPLOR CALCULATION USING REMARK 3 THE CONSTRAINTS DERIVED FROM AUTOSTRUCTURE, THE 20 LOWEST ENERGY REMARK 3 STRUCTURES OUT OF 100 WERE FURTHER REFINED BY RESTRAINED REMARK 3 MOLECULAR DYANMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS). REMARK 4 REMARK 4 2JQN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100167. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.98 MM [U-100% 13C; U-100% 15N] REMARK 210 CCR55, 20 MM MES, 100 MM NACL, 5 REMARK 210 MM CACL2, 10 MM DTT, 0.02% NAN3, REMARK 210 95% H2O/5% D2O; 0.98 MM [U-100% REMARK 210 13C; U-100% 15N] CCR55, 20 MM REMARK 210 MES, 100 MM NACL, 5 MM CACL2, 10 REMARK 210 MM DTT, 0.02% NAN3, 100% D2O; REMARK 210 0.58 MM [U-5% 13C; U-100% 15N] REMARK 210 CCR55, 20 MM MES, 100 MM NACL, 5 REMARK 210 MM CACL2, 10 MM DTT, 0.02% NAN3, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HN(CO)CA; REMARK 210 3D HNCA; 3D GFT HNNCACBCA; 3D REMARK 210 GFT CACB(CO)NHN; 3D GFT REMARK 210 HAHBCACB(CO)NHN; 3D HCCH-TOCSY; REMARK 210 3D HCCH-COSY; 3D CCH-TOCSY; 3D REMARK 210 HNHA; 2D 1H-13C HSQC HIGH RES. REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.2.1, SPARKY 3.110, REMARK 210 AUTOSTRUCTURE 2.1.1, NMRPIPE 2.3, REMARK 210 X-PLOR NIH 2.11.2, CNS 1.1, REMARK 210 PSVS 1.3, PDBSTAT 5.0, VNMR 6.1C REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE RESONANCE AND REMARK 210 GFT NMR SPECTROSCOPY. AUTOMATED BACKBONE ASSIGNMENTS WERE MADE REMARK 210 USING AUTOASSIGN, AND THE SIDE CHAIN ASSIGNMENTS WERE COMPLETED REMARK 210 MANUALLY. AUTOMATIC NOESY ASSIGNMENTS AS WELL AS DISTANCE, REMARK 210 DIHEDRAL ANGLE (HYPER) AND HYDROGEN BOND CONSTRAINTS WERE REMARK 210 DETERMINED USING AUTOSTRUCTURE. COMPLETENESS OF NMR ASSIGNMENTS REMARK 210 (EXCLUDING C-TERMINAL HHHHHH): BACKBONE, 97.6%, SIDE CHAIN, 96.5% REMARK 210 , AROMATICS, 89.1%, STEREOSPECIFIC METHYL, 91.3%. FINAL REMARK 210 STRUCTURE QUALITY FACTORS (FOR RESIDUES 1 TO 116, PSVS 1.3), REMARK 210 WHERE ORDERED RESIDUES [S(PHI) + S(PSI) > 1.8] COMPRISE: 3-22,26- REMARK 210 31,34-35,40-49,56-62,69-73,80-96,109-112: (A) RMSD (ORDERED REMARK 210 RESIDUES): BB, 0.9, HEAVY ATOM, 1.3. (B) RAMACHANDRAN STATISTICS REMARK 210 FOR ORDERED RESIDUES: MOST FAVORED, 91.3%, ADDITIONALLY ALLOWED, REMARK 210 8.7%, GENEROUSLY ALLOWED, 0.0%, DISALLOWED, 0.0%. (C) PROCHECK REMARK 210 SCORES FOR ORDERED RESIDUES (RAW/Z-): PHI-PSI, -0.25/-0.67, ALL, REMARK 210 -0.15/-0.89. (D) MOLPROBITY CLASH SCORE (RAW/Z-): 19.99/-1.90. REMARK 210 (E) RPF SCORES FOR GOODNESS OF FIT TO NOESY DATA (RESIDUES 1-116) REMARK 210 : RECALL, 0.985, PRECISION, 0.900, F-MEASURE, 0.941, DP-SCORE, REMARK 210 0.755. THE C-TERMINAL HIS TAG RESIDUES OF THE PROTEIN (HHHHHH) REMARK 210 WERE INCLUDED IN ALL STRUCTURE CALCULATIONS BUT HAVE BEEN REMARK 210 OMITTED FROM THIS DEPOSITION. COORDINATES FOR THE FOLLOWING REMARK 210 RESIDUES ARE NOT WELL DETERMINED (S(PHI) + S(PSI) < 1.8): 1-2,23- REMARK 210 25,32-33,36-39,50-55,63-68,74-79,97-108,113-116. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 -48.53 72.48 REMARK 500 1 LEU A 3 96.10 -69.61 REMARK 500 1 PHE A 33 -176.69 68.64 REMARK 500 1 ALA A 54 54.12 -99.18 REMARK 500 1 ASN A 55 36.37 -158.80 REMARK 500 1 ALA A 63 -78.41 34.16 REMARK 500 1 GLU A 64 132.72 73.18 REMARK 500 1 PRO A 65 26.16 -70.38 REMARK 500 1 LEU A 66 59.41 -90.85 REMARK 500 1 TRP A 72 80.09 -69.97 REMARK 500 1 ASP A 102 -162.99 -106.29 REMARK 500 1 PRO A 107 101.32 -51.66 REMARK 500 2 GLU A 23 -165.27 -73.78 REMARK 500 2 SER A 25 163.31 163.96 REMARK 500 2 ASN A 55 81.31 55.25 REMARK 500 2 GLU A 64 133.82 68.97 REMARK 500 2 GLU A 68 25.84 -149.81 REMARK 500 2 TYR A 85 37.52 -96.24 REMARK 500 2 LEU A 101 -170.46 62.65 REMARK 500 2 LEU A 113 -64.42 -91.45 REMARK 500 2 LEU A 115 94.81 -48.88 REMARK 500 3 LYS A 48 -61.18 -90.17 REMARK 500 3 ASN A 55 81.31 60.40 REMARK 500 3 ALA A 63 37.61 -82.01 REMARK 500 3 PRO A 65 83.29 -46.28 REMARK 500 3 ARG A 76 -75.51 66.32 REMARK 500 3 PRO A 107 104.94 -57.72 REMARK 500 4 ALA A 54 39.79 -95.34 REMARK 500 4 ALA A 103 -83.50 56.56 REMARK 500 5 GLU A 23 74.34 -154.85 REMARK 500 5 LYS A 48 -70.62 -82.42 REMARK 500 5 ARG A 51 101.91 -58.39 REMARK 500 5 GLU A 64 158.89 65.70 REMARK 500 5 PRO A 65 76.55 -55.90 REMARK 500 5 ARG A 76 90.95 -51.39 REMARK 500 5 ALA A 79 97.04 61.36 REMARK 500 5 PRO A 82 96.99 -66.31 REMARK 500 5 ALA A 103 -84.95 63.42 REMARK 500 5 PRO A 107 -73.95 -83.56 REMARK 500 5 GLN A 108 -147.05 56.07 REMARK 500 5 LEU A 109 5.65 -64.78 REMARK 500 6 PHE A 33 -171.91 64.39 REMARK 500 6 ASP A 69 30.49 -78.86 REMARK 500 6 ARG A 76 161.23 67.32 REMARK 500 6 ALA A 79 -169.75 68.06 REMARK 500 6 TYR A 85 30.04 -80.14 REMARK 500 6 ALA A 103 -86.41 54.75 REMARK 500 6 VAL A 106 -57.85 -156.08 REMARK 500 6 PRO A 107 -74.54 -40.69 REMARK 500 6 GLN A 108 71.50 -48.69 REMARK 500 REMARK 500 THIS ENTRY HAS 190 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O0Q RELATED DB: PDB REMARK 900 XRAY CRYSTAL STRUCTURE REMARK 900 RELATED ID: CCR55 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15281 RELATED DB: BMRB DBREF 2JQN A 1 114 UNP Q9AAR9 Q9AAR9_CAUCR 1 114 SEQADV 2JQN LEU A 115 UNP Q9AAR9 CLONING ARTIFACT SEQADV 2JQN GLU A 116 UNP Q9AAR9 CLONING ARTIFACT SEQADV 2JQN HIS A 117 UNP Q9AAR9 EXPRESSION TAG SEQADV 2JQN HIS A 118 UNP Q9AAR9 EXPRESSION TAG SEQADV 2JQN HIS A 119 UNP Q9AAR9 EXPRESSION TAG SEQADV 2JQN HIS A 120 UNP Q9AAR9 EXPRESSION TAG SEQADV 2JQN HIS A 121 UNP Q9AAR9 EXPRESSION TAG SEQADV 2JQN HIS A 122 UNP Q9AAR9 EXPRESSION TAG SEQRES 1 A 122 MET THR LEU ILE TYR LYS ILE LEU SER ARG ALA GLU TRP SEQRES 2 A 122 ASP ALA ALA LYS ALA GLN GLY ARG PHE GLU GLY SER ALA SEQRES 3 A 122 VAL ASP LEU ALA ASP GLY PHE ILE HIS LEU SER ALA GLY SEQRES 4 A 122 GLU GLN ALA GLN GLU THR ALA ALA LYS TRP PHE ARG GLY SEQRES 5 A 122 GLN ALA ASN LEU VAL LEU LEU ALA VAL GLU ALA GLU PRO SEQRES 6 A 122 LEU GLY GLU ASP LEU LYS TRP GLU ALA SER ARG GLY GLY SEQRES 7 A 122 ALA ARG PHE PRO HIS LEU TYR ARG PRO LEU LEU VAL SER SEQRES 8 A 122 GLU VAL THR ARG GLU ALA ASP LEU ASP LEU ASP ALA ASP SEQRES 9 A 122 GLY VAL PRO GLN LEU GLY ASP HIS LEU ALA LEU GLU HIS SEQRES 10 A 122 HIS HIS HIS HIS HIS HELIX 1 1 ARG A 10 GLY A 20 1 11 HELIX 2 2 SER A 25 GLY A 32 1 8 HELIX 3 3 ALA A 38 TRP A 49 1 12 HELIX 4 4 ARG A 76 GLY A 78 5 3 HELIX 5 5 SER A 91 VAL A 93 5 3 HELIX 6 6 GLN A 108 LEU A 113 1 6 SHEET 1 A 3 LEU A 3 SER A 9 0 SHEET 2 A 3 LEU A 56 GLU A 62 -1 O VAL A 61 N ILE A 4 SHEET 3 A 3 ARG A 95 LEU A 99 -1 O ARG A 95 N ALA A 60 SHEET 1 B 2 ARG A 21 PHE A 22 0 SHEET 2 B 2 LEU A 88 LEU A 89 -1 O LEU A 88 N PHE A 22 SHEET 1 C 3 ILE A 34 HIS A 35 0 SHEET 2 C 3 ARG A 80 LEU A 84 -1 O LEU A 84 N ILE A 34 SHEET 3 C 3 LEU A 70 ALA A 74 -1 N LYS A 71 O HIS A 83 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1