HEADER STRUCTURAL GENOMICS 06-JUN-07 2JQO TITLE NMR SOLUTION STRUCTURE OF BACILLUS SUBTILIS YOBA 21-120: NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET SR547 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YOBA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 21-120; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YOBA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21 KEYWDS PROTEIN, OB-FOLD, BETA BARREL, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,T.A.RAMELOT,C.X.CHEN,M.JANG,K.CUNNINGHAM,L.MA,R.XIAO,J.LIU, AUTHOR 2 M.C.BARAN,T.B.ACTON,B.ROST,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 20-DEC-23 2JQO 1 REMARK REVDAT 5 14-JUN-23 2JQO 1 REMARK REVDAT 4 19-FEB-20 2JQO 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JQO 1 VERSN REVDAT 2 02-OCT-07 2JQO 1 AUTHOR REVDAT 1 03-JUL-07 2JQO 0 JRNL AUTH J.R.CORT JRNL TITL NMR SOLUTION STRUCTURE OF BACILLUS SUBTILIS YOBA 21-120: JRNL TITL 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR547 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOSTRUCTURE, X-PLOR NIH REMARK 3 AUTHORS : HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JQO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100168. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.75 MM [U-100% 13C; U-100% 15N] REMARK 210 ENTITY, 10 MM DITHIOTHREITOL, 5 REMARK 210 MM CALCIUM CHLORIDE, 100 MM REMARK 210 SODIUM CHLORIDE, 20 MM AMMONIUM REMARK 210 ACETATE, 0.02 % SODIUM AZIDE, 95% REMARK 210 H2O/5% D2O; 0.79 MM [U-100% N15] REMARK 210 ; 13C FROM 5% 13C-GLUCOSE IN REMARK 210 GROWTH MEDIUM ENTITY, 10 MM REMARK 210 DITHIOTHREITOL, 5 MM CALCIUM REMARK 210 CHLORIDE, 100 MM SODIUM CHLORIDE, REMARK 210 20 MM AMMONIUM ACETATE, 0.02 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O; REMARK 210 0.75 MM [U-100% 13C; U-100% 15N] REMARK 210 ENTITY, 10 MM DITHIOTHREITOL, 5 REMARK 210 MM CALCIUM CHLORIDE, 100 MM REMARK 210 SODIUM CHLORIDE, 20 MM AMMONIUM REMARK 210 ACETATE, 0.02 % SODIUM AZIDE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HNHA; 3D HNCO; 3D CCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 4D 1H-13C-13C-1H HMQC-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, FELIX, PSVS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY, FEWEST RESTRAINT REMARK 210 VIOLATIONS, FAVORABLE NON-BONDED REMARK 210 PARAMETERS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 41 HZ3 LYS A 52 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 7 107.26 -174.69 REMARK 500 1 ASP A 24 -146.44 -115.83 REMARK 500 1 ASN A 56 28.86 -143.57 REMARK 500 1 ASN A 67 37.72 -145.30 REMARK 500 1 THR A 68 5.01 -69.86 REMARK 500 1 HIS A 82 -50.02 -155.95 REMARK 500 1 ASN A 88 93.59 60.73 REMARK 500 2 ASN A 2 75.45 -116.86 REMARK 500 2 PHE A 53 46.09 -99.03 REMARK 500 2 ASN A 67 41.04 -85.55 REMARK 500 2 HIS A 82 -42.01 -144.79 REMARK 500 2 ASN A 88 90.46 51.83 REMARK 500 3 ASN A 2 77.86 60.14 REMARK 500 3 GLU A 5 -163.18 64.29 REMARK 500 3 PHE A 53 41.34 -91.32 REMARK 500 3 LEU A 62 31.57 -88.43 REMARK 500 3 THR A 68 32.52 -79.80 REMARK 500 3 HIS A 82 -45.06 -140.99 REMARK 500 3 GLU A 86 59.49 -90.52 REMARK 500 3 ASN A 88 102.06 68.69 REMARK 500 4 ASP A 9 -87.35 -99.28 REMARK 500 4 ASN A 25 -55.08 75.08 REMARK 500 4 THR A 34 17.11 -146.97 REMARK 500 4 ALA A 36 96.43 61.58 REMARK 500 4 PHE A 53 40.17 -97.40 REMARK 500 4 ASN A 88 92.17 61.09 REMARK 500 4 LEU A 101 96.59 68.92 REMARK 500 4 HIS A 104 81.13 57.68 REMARK 500 5 ASN A 4 75.83 57.79 REMARK 500 5 THR A 11 96.97 -65.03 REMARK 500 5 ASP A 24 -69.87 -123.05 REMARK 500 5 ASN A 25 -75.24 -166.09 REMARK 500 5 ASP A 33 -162.73 -163.58 REMARK 500 5 THR A 34 23.07 82.15 REMARK 500 5 ALA A 36 134.36 70.63 REMARK 500 5 PHE A 53 44.65 -98.81 REMARK 500 5 ASN A 88 90.96 57.98 REMARK 500 5 HIS A 107 -76.65 -118.36 REMARK 500 6 ASN A 88 89.99 60.31 REMARK 500 7 ASP A 9 95.39 -69.25 REMARK 500 7 GLU A 10 -50.61 -163.01 REMARK 500 7 ASP A 24 -73.69 -88.42 REMARK 500 7 ASN A 25 -64.13 171.73 REMARK 500 7 ALA A 36 107.45 64.34 REMARK 500 7 PHE A 53 55.58 -118.58 REMARK 500 7 THR A 68 35.30 -97.29 REMARK 500 7 HIS A 82 -37.70 -152.37 REMARK 500 7 ASN A 88 100.08 42.92 REMARK 500 7 GLU A 102 -175.80 -67.35 REMARK 500 7 HIS A 107 -87.36 -160.71 REMARK 500 REMARK 500 THIS ENTRY HAS 138 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15288 RELATED DB: BMRB REMARK 900 RELATED ID: SR547 RELATED DB: TARGETDB DBREF 2JQO A 2 100 UNP O31835 YOBA_BACSU 22 120 SEQADV 2JQO MET A 1 UNP O31835 EXPRESSION TAG SEQADV 2JQO LEU A 101 UNP O31835 EXPRESSION TAG SEQADV 2JQO GLU A 102 UNP O31835 EXPRESSION TAG SEQADV 2JQO HIS A 103 UNP O31835 EXPRESSION TAG SEQADV 2JQO HIS A 104 UNP O31835 EXPRESSION TAG SEQADV 2JQO HIS A 105 UNP O31835 EXPRESSION TAG SEQADV 2JQO HIS A 106 UNP O31835 EXPRESSION TAG SEQADV 2JQO HIS A 107 UNP O31835 EXPRESSION TAG SEQADV 2JQO HIS A 108 UNP O31835 EXPRESSION TAG SEQRES 1 A 108 MET ASN LYS ASN GLU GLN ASN GLY ASP GLU THR LYS MET SEQRES 2 A 108 GLN SER LEU VAL GLY TYR VAL VAL LEU LYS ASP ASN GLU SEQRES 3 A 108 ARG ALA ILE LEU ILE THR ASP THR LYS ALA PRO GLY LYS SEQRES 4 A 108 GLU ASP TYR ASN LEU SER GLU GLY GLN LEU MET ASN LYS SEQRES 5 A 108 PHE LYS ASN ASN ILE VAL ILE VAL GLY LEU SER GLU ILE SEQRES 6 A 108 ASP ASN THR ASP ASP LEU LYS ARG GLY GLU LYS ILE LYS SEQRES 7 A 108 VAL TRP PHE HIS THR ARG LYS GLU SER ASN PRO PRO SER SEQRES 8 A 108 ALA THR ILE GLN LYS TYR GLU LEU LEU LEU GLU HIS HIS SEQRES 9 A 108 HIS HIS HIS HIS HELIX 1 1 GLU A 40 LEU A 44 5 5 HELIX 2 2 SER A 45 PHE A 53 1 9 HELIX 3 3 ASN A 67 LEU A 71 5 5 SHEET 1 A 6 GLN A 14 LYS A 23 0 SHEET 2 A 6 ARG A 27 ILE A 31 -1 O ILE A 29 N LEU A 22 SHEET 3 A 6 ILE A 57 GLY A 61 -1 O VAL A 58 N LEU A 30 SHEET 4 A 6 SER A 91 LEU A 99 1 O ALA A 92 N GLY A 61 SHEET 5 A 6 GLU A 75 LYS A 85 -1 N LYS A 78 O GLU A 98 SHEET 6 A 6 GLN A 14 LYS A 23 -1 N GLY A 18 O ILE A 77 CISPEP 1 ASN A 88 PRO A 89 1 -1.47 CISPEP 2 ASN A 88 PRO A 89 2 7.80 CISPEP 3 ASN A 88 PRO A 89 3 -0.68 CISPEP 4 ASN A 88 PRO A 89 4 -0.87 CISPEP 5 ASN A 88 PRO A 89 5 1.81 CISPEP 6 ASN A 88 PRO A 89 6 2.39 CISPEP 7 ASN A 88 PRO A 89 7 3.08 CISPEP 8 ASN A 88 PRO A 89 8 0.35 CISPEP 9 ASN A 88 PRO A 89 9 2.29 CISPEP 10 ASN A 88 PRO A 89 10 -0.16 CISPEP 11 ASN A 88 PRO A 89 11 2.18 CISPEP 12 ASN A 88 PRO A 89 12 1.60 CISPEP 13 ASN A 88 PRO A 89 13 3.41 CISPEP 14 ASN A 88 PRO A 89 14 1.36 CISPEP 15 ASN A 88 PRO A 89 15 -0.05 CISPEP 16 ASN A 88 PRO A 89 16 -0.34 CISPEP 17 ASN A 88 PRO A 89 17 3.67 CISPEP 18 ASN A 88 PRO A 89 18 2.91 CISPEP 19 ASN A 88 PRO A 89 19 1.26 CISPEP 20 ASN A 88 PRO A 89 20 1.96 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1