HEADER ANTIMICROBIAL PROTEIN 20-JUN-07 2JR3 TITLE ANTIBACTERIAL PEPTIDE FROM EGGSHELL MATRIX: STRUCTURE AND SELF- TITLE 2 ASSEMBLY OF BETA-DEFENSIN LIKE PEPTIDE FROM THE CHINESE SOFT-SHELLED TITLE 3 TURTLE EGGSHELL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PELOVATERIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PELODISCUS SINENSIS; SOURCE 3 ORGANISM_COMMON: CHINESE SOFTSHELL TURTLE KEYWDS BETA-DEFENSIN LIKE PEPTIDE, CHINESE SOFT-SHELLED TURTLE EGGSHELL, KEYWDS 2 ANTIBACTERIAL PEPTIDE, EGGSHELL MATRIX, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.VIVEKANANDAN,R.LAKSHMINARAYANAN,S.D.S.JOIS,R.PERUMAL SAMY, AUTHOR 2 Y.BANERJEE,E.O.CHI-JIN,K.W.TEO,R.M.KINI,S.VALIYAVEETTIL REVDAT 5 20-DEC-23 2JR3 1 REMARK REVDAT 4 14-JUN-23 2JR3 1 REMARK REVDAT 3 19-FEB-20 2JR3 1 REMARK REVDAT 2 24-FEB-09 2JR3 1 VERSN REVDAT 1 27-MAY-08 2JR3 0 JRNL AUTH R.LAKSHMINARAYANAN,S.VIVEKANANDAN,R.P.SAMY,Y.BANERJEE, JRNL AUTH 2 E.O.CHI-JIN,K.W.TEO,S.D.JOIS,R.M.KINI,S.VALIYAVEETTIL JRNL TITL STRUCTURE, SELF-ASSEMBLY, AND DUAL ROLE OF A JRNL TITL 2 BETA-DEFENSIN-LIKE PEPTIDE FROM THE CHINESE SOFT-SHELLED JRNL TITL 3 TURTLE EGGSHELL MATRIX. JRNL REF J.AM.CHEM.SOC. V. 130 4660 2008 JRNL REFN ISSN 0002-7863 JRNL PMID 18341335 JRNL DOI 10.1021/JA075659K REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : P.GUNTERT ET AL. (CYANA), P.GUNTERT ET AL. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JR3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100183. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM PELOVATERIN, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.110 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 69.83 62.03 REMARK 500 1 PRO A 4 -172.84 -69.79 REMARK 500 1 SER A 6 -166.47 -100.18 REMARK 500 1 ARG A 7 149.57 -177.03 REMARK 500 1 CYS A 16 125.47 -176.89 REMARK 500 1 LEU A 22 155.80 -46.06 REMARK 500 1 HIS A 27 -172.06 -56.97 REMARK 500 1 ARG A 40 106.14 -60.00 REMARK 500 2 PRO A 4 -174.65 -69.73 REMARK 500 2 SER A 6 -166.57 -105.77 REMARK 500 2 ARG A 7 143.24 -179.97 REMARK 500 2 CYS A 16 125.63 -174.88 REMARK 500 2 LEU A 22 158.40 -45.70 REMARK 500 2 HIS A 27 -171.53 -57.26 REMARK 500 2 ARG A 40 106.39 -56.12 REMARK 500 3 PRO A 4 -170.49 -69.78 REMARK 500 3 CYS A 16 124.81 -173.29 REMARK 500 3 LEU A 22 159.06 -45.71 REMARK 500 3 HIS A 27 -172.12 -56.79 REMARK 500 3 ARG A 40 105.77 -57.85 REMARK 500 4 ASP A 2 53.06 -143.57 REMARK 500 4 PRO A 4 -171.87 -69.78 REMARK 500 4 SER A 6 -166.54 -103.42 REMARK 500 4 CYS A 16 125.27 -178.03 REMARK 500 4 LEU A 22 156.62 -45.78 REMARK 500 4 HIS A 27 -171.62 -57.36 REMARK 500 5 ASP A 2 121.17 -175.05 REMARK 500 5 PRO A 4 -175.09 -69.76 REMARK 500 5 ARG A 7 142.15 -178.33 REMARK 500 5 CYS A 16 124.81 -174.87 REMARK 500 5 LEU A 22 158.97 -45.58 REMARK 500 5 HIS A 27 -171.70 -57.09 REMARK 500 5 ARG A 40 105.57 -56.23 REMARK 500 6 ASP A 2 95.50 62.87 REMARK 500 6 PRO A 4 -174.68 -69.74 REMARK 500 6 SER A 6 -166.92 -109.13 REMARK 500 6 ARG A 7 142.79 -179.92 REMARK 500 6 CYS A 16 125.31 -178.42 REMARK 500 6 LEU A 22 156.81 -45.88 REMARK 500 6 HIS A 27 -171.60 -57.16 REMARK 500 7 PRO A 4 -171.46 -69.68 REMARK 500 7 SER A 6 -166.56 -104.57 REMARK 500 7 ARG A 7 143.28 179.75 REMARK 500 7 CYS A 16 125.48 -176.94 REMARK 500 7 LEU A 22 156.80 -45.98 REMARK 500 7 HIS A 27 -171.96 -57.10 REMARK 500 8 PRO A 4 -173.19 -69.79 REMARK 500 8 SER A 6 -166.77 -108.00 REMARK 500 8 ARG A 7 148.97 -177.27 REMARK 500 8 CYS A 16 124.52 -172.13 REMARK 500 REMARK 500 THIS ENTRY HAS 124 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15318 RELATED DB: BMRB DBREF 2JR3 A 1 42 UNP P84818 PVAT_TRISI 1 42 SEQRES 1 A 42 ASP ASP THR PRO SER SER ARG CYS GLY SER GLY GLY TRP SEQRES 2 A 42 GLY PRO CYS LEU PRO ILE VAL ASP LEU LEU CYS ILE VAL SEQRES 3 A 42 HIS VAL THR VAL GLY CYS SER GLY GLY PHE GLY CYS CYS SEQRES 4 A 42 ARG ILE GLY HELIX 1 1 VAL A 20 LEU A 22 5 3 SHEET 1 A 2 LEU A 17 PRO A 18 0 SHEET 2 A 2 PHE A 36 GLY A 37 -1 O GLY A 37 N LEU A 17 SSBOND 1 CYS A 8 CYS A 38 1555 1555 1.88 SSBOND 2 CYS A 16 CYS A 32 1555 1555 1.95 SSBOND 3 CYS A 24 CYS A 39 1555 1555 1.95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1