HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-JUN-07 2JR5 TITLE SOLUTION STRUCTURE OF UPF0350 PROTEIN VC_2471. NORTHEAST STRUCTURAL TITLE 2 GENOMICS TARGET VCR36 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0350 PROTEIN VC_2471; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: EL TOR INABA N16961; SOURCE 5 ATCC: 39315; SOURCE 6 GENE: VC_2471; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS UPF0350 PROTEIN VC_2471, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.WU,D.PARISH,K.K.SINGARAPU,D.SUKUMARAN,A.ELETSKI,R.SHASTRY,C.NWOSU, AUTHOR 2 M.MAGLAQUI,R.XIAO,J.LIU,M.C.BARAN,G.SWAPNA,T.B.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 7 14-JUN-23 2JR5 1 REMARK REVDAT 6 19-FEB-20 2JR5 1 SEQADV REVDAT 5 30-JAN-13 2JR5 1 REMARK VERSN REVDAT 4 24-FEB-09 2JR5 1 VERSN REVDAT 3 06-MAY-08 2JR5 1 SOURCE REVDAT 2 31-JUL-07 2JR5 1 AUTHOR REVDAT 1 24-JUL-07 2JR5 0 JRNL AUTH Y.WU,D.PARISH,K.K.SINGARAPU,D.SUKUMARAN,A.ELETSKI,R.SHASTRY, JRNL AUTH 2 C.NWOSU,M.MAGLAQUI,R.XIAO,J.LIU,M.C.BARAN,G.SWAPNA,B.ROST, JRNL AUTH 3 G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION STRUCTURE OF UPF0350 PROTEIN VC_2471. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.ELETSKY,M.Y.JEONG,H.KIM,H.W.LEE,R.XIAO,D.J.PAGLIARINI, REMARK 1 AUTH 2 J.H.PRESTEGARD,D.R.WINGE,G.T.MONTELIONE,T.SZYPERSKI REMARK 1 TITL SOLUTION NMR STRUCTURE OF YEAST SUCCINATE DEHYDROGENASE REMARK 1 TITL 2 FLAVINYLATION FACTOR SDH5 REVEALS A PUTATIVE SDH1 BINDING REMARK 1 TITL 3 SITE. REMARK 1 REF BIOCHEMISTRY V. 51 8475 2012 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 23062074 REMARK 1 DOI 10.1021/BI301171U REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOASSIGN, CNS REMARK 3 AUTHORS : ZIMMERMAN, MOSELEY, KULIKOWSKI AND MONTELIONE REMARK 3 (AUTOASSIGN), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JR5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100185. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 25 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-100% 13C; U-100% 15N] REMARK 210 ENTITY, 90% H2O/10% D2O; 1.1 MM REMARK 210 [U-5% 13C; U-100% 15N] ENTITY, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4,3D, GFT HNNCABCA; 4,3D, GFT REMARK 210 CABCACONNH; 4,3D, GFT HCCH COSY; REMARK 210 3D, 15N-13C RESOLVEDSIMULTANEOUS REMARK 210 NOESY; 3D HNCO; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE, XEASY, NMRPIPE, REMARK 210 CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 2 159.78 69.83 REMARK 500 1 ARG A 15 92.09 -66.51 REMARK 500 1 SER A 50 -160.91 -116.55 REMARK 500 1 HIS A 62 47.72 -168.40 REMARK 500 1 LEU A 87 -75.59 -77.01 REMARK 500 1 HIS A 89 -161.72 70.41 REMARK 500 1 HIS A 92 -65.36 178.30 REMARK 500 2 ARG A 16 -56.61 72.29 REMARK 500 2 HIS A 62 43.28 -143.07 REMARK 500 2 GLU A 88 -37.99 69.42 REMARK 500 2 HIS A 89 86.97 -66.06 REMARK 500 3 ARG A 16 -80.82 -113.12 REMARK 500 3 HIS A 62 32.49 -158.91 REMARK 500 3 GLU A 88 76.04 -104.41 REMARK 500 4 ASP A 51 123.67 67.42 REMARK 500 4 ASP A 52 78.13 -118.01 REMARK 500 4 ARG A 64 132.87 70.10 REMARK 500 4 GLU A 88 -99.88 51.86 REMARK 500 4 HIS A 89 44.89 -145.68 REMARK 500 5 TYR A 2 103.94 62.48 REMARK 500 5 ARG A 15 166.50 72.90 REMARK 500 5 ARG A 16 17.42 -147.43 REMARK 500 5 SER A 50 -154.72 -97.68 REMARK 500 5 HIS A 62 83.16 -154.66 REMARK 500 5 HIS A 90 -49.83 71.23 REMARK 500 5 HIS A 92 122.85 77.29 REMARK 500 6 ARG A 16 142.38 75.50 REMARK 500 6 ASP A 51 -169.34 -79.50 REMARK 500 7 THR A 3 -165.74 -111.01 REMARK 500 7 ARG A 16 -86.02 56.62 REMARK 500 7 ILE A 25 -60.91 -94.46 REMARK 500 7 ASP A 52 52.58 -119.02 REMARK 500 8 ARG A 16 -164.04 61.22 REMARK 500 8 ASP A 52 54.48 -113.93 REMARK 500 8 HIS A 91 -162.59 72.93 REMARK 500 9 ARG A 15 134.77 75.71 REMARK 500 9 MET A 18 72.41 -101.12 REMARK 500 9 GLU A 88 85.44 56.58 REMARK 500 9 HIS A 90 -80.42 -136.94 REMARK 500 9 HIS A 91 80.96 55.37 REMARK 500 9 HIS A 93 -53.06 52.87 REMARK 500 10 THR A 3 -163.75 -104.75 REMARK 500 10 ARG A 16 138.98 75.49 REMARK 500 10 ASP A 51 119.37 55.25 REMARK 500 10 ARG A 64 14.71 -145.92 REMARK 500 10 GLU A 88 -98.53 -118.76 REMARK 500 10 HIS A 89 97.36 -179.33 REMARK 500 10 HIS A 92 123.80 -177.91 REMARK 500 11 ARG A 16 -39.44 74.07 REMARK 500 11 HIS A 90 -48.20 73.73 REMARK 500 REMARK 500 THIS ENTRY HAS 98 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15320 RELATED DB: BMRB REMARK 900 RELATED ID: VCR36 RELATED DB: TARGETDB DBREF 2JR5 A 1 86 UNP Q9KPA2 Y2471_VIBCH 1 86 SEQADV 2JR5 LEU A 87 UNP Q9KPA2 CLONING ARTIFACT SEQADV 2JR5 GLU A 88 UNP Q9KPA2 CLONING ARTIFACT SEQADV 2JR5 HIS A 89 UNP Q9KPA2 CLONING ARTIFACT SEQADV 2JR5 HIS A 90 UNP Q9KPA2 CLONING ARTIFACT SEQADV 2JR5 HIS A 91 UNP Q9KPA2 CLONING ARTIFACT SEQADV 2JR5 HIS A 92 UNP Q9KPA2 CLONING ARTIFACT SEQADV 2JR5 HIS A 93 UNP Q9KPA2 CLONING ARTIFACT SEQADV 2JR5 HIS A 94 UNP Q9KPA2 CLONING ARTIFACT SEQRES 1 A 94 MET TYR THR ALA GLU GLN LYS ALA ARG ILE LYS TRP ALA SEQRES 2 A 94 CYS ARG ARG GLY MET LEU GLU LEU ASP VAL VAL ILE MET SEQRES 3 A 94 PRO PHE PHE GLU GLU CYS PHE ASP SER LEU THR GLU SER SEQRES 4 A 94 GLU GLN ASP ASP PHE VAL ALA LEU LEU GLU SER ASP ASP SEQRES 5 A 94 PRO ASP LEU PHE ALA TRP VAL MET GLY HIS GLY ARG CYS SEQRES 6 A 94 GLU ASN LEU GLY LEU ALA ALA MET VAL ASP LYS ILE VAL SEQRES 7 A 94 ALA HIS ASN LEU SER LYS VAL ARG LEU GLU HIS HIS HIS SEQRES 8 A 94 HIS HIS HIS HELIX 1 1 THR A 3 ARG A 15 1 13 HELIX 2 2 MET A 18 VAL A 24 1 7 HELIX 3 3 PRO A 27 PHE A 33 1 7 HELIX 4 4 THR A 37 GLU A 49 1 13 HELIX 5 5 ASP A 52 GLY A 61 1 10 HELIX 6 6 ASN A 67 HIS A 89 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1