HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-JUN-07 2JRA TITLE A NOVEL DOMAIN-SWAPPED SOLUTION NMR STRUCTURE OF PROTEIN RPA2121 FROM TITLE 2 RHODOPSEUDOMONAS PALUSTRIS. NORTHEAST STRUCTURAL GENOMICS TARGET RPT6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN RPA2121; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 258594; SOURCE 4 STRAIN: CGA009; SOURCE 5 ATCC: BAA-98; SOURCE 6 GENE: RPA2121; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TVLIC KEYWDS DOMAIN-SWAPPED DIMER, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.WU,A.YEE,A.LEMAK,J.CORT,S.BANSAL,A.SEMEST,V.GUIDO,M.A.KENNEDY, AUTHOR 2 J.H.PRESTEGARD,C.H.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 7 08-MAY-24 2JRA 1 REMARK REVDAT 6 20-DEC-23 2JRA 1 REMARK REVDAT 5 14-JUN-23 2JRA 1 REMARK REVDAT 4 19-FEB-20 2JRA 1 REMARK REVDAT 3 13-JUL-11 2JRA 1 VERSN REVDAT 2 24-FEB-09 2JRA 1 VERSN REVDAT 1 03-JUL-07 2JRA 0 JRNL AUTH B.WU,A.YEE,A.LEMAK,J.CORT,S.BANSAL,A.SEMEST,V.GUIDO, JRNL AUTH 2 M.A.KENNEDY,J.H.PRESTEGARD,C.H.ARROWSMITH JRNL TITL A NOVEL DOMAIN-SWAPPED SOLUTION NMR STRUCTURE OF PROTEIN JRNL TITL 2 RPA2121 FROM RHODOPSEUDOMONAS PALUSTRIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, CNS 1.0 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JRA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100190. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 UNKNOWN FUNCTION PROTEIN RPA2121 REMARK 210 FROM RHODOPSEUDOMONAS PALUSTRIS, REMARK 210 10 MM [U-100% 2H] TRIS, 300 MM REMARK 210 SODIUM CHLORIDE, 0.01 % SODIUM REMARK 210 AZIDE, 1 MM BENZAMIDINE, 90% H2O/ REMARK 210 10% D2O; 0.5 MM [U-7% 13C; U-99% REMARK 210 15N] UNKNOWN FUNCTION PROTEIN REMARK 210 RPA2121 FROM RHODOPSEUDOMONAS REMARK 210 PALUSTRIS, 10 MM [U-100% 2H] REMARK 210 TRIS, 300 MM SODIUM CHLORIDE, REMARK 210 0.01 % SODIUM AZIDE, 1 MM REMARK 210 BENZAMIDINE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D HBHA(CO) REMARK 210 NH; 3D HNHA; 3D HCCH-TOCSY; 3D REMARK 210 CCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 2D 1H-13C HSQC; 2D REMARK 210 15N HSQC-TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.95, AUTOASSIGN, REMARK 210 AUTOSTRUCTURE 2.1.0, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 16 -82.91 63.63 REMARK 500 1 ASN A 30 19.05 -157.40 REMARK 500 1 PHE A 38 30.92 -88.79 REMARK 500 1 VAL A 40 -76.52 -102.43 REMARK 500 1 ASP A 50 -12.95 -142.27 REMARK 500 1 SER A 59 -83.61 17.48 REMARK 500 1 GLN A 60 11.41 -155.05 REMARK 500 1 MET B 2 100.99 71.24 REMARK 500 1 ALA B 16 89.05 -66.02 REMARK 500 1 ASN B 30 20.83 -158.24 REMARK 500 1 PHE B 38 32.11 -88.00 REMARK 500 1 VAL B 40 -76.89 -103.09 REMARK 500 1 ASP B 50 -12.24 -140.60 REMARK 500 1 SER B 59 -83.59 16.62 REMARK 500 1 GLN B 60 10.99 -154.68 REMARK 500 2 ASN A 30 21.55 -158.98 REMARK 500 2 VAL A 40 -64.77 -100.29 REMARK 500 2 GLN A 60 -22.72 -175.11 REMARK 500 2 ASN A 61 -70.34 -49.59 REMARK 500 2 MET B 2 25.80 -167.80 REMARK 500 2 THR B 3 93.99 -61.93 REMARK 500 2 ALA B 4 78.34 -169.00 REMARK 500 2 ALA B 10 87.64 -67.92 REMARK 500 2 ALA B 15 -62.89 -143.89 REMARK 500 2 ALA B 16 78.32 57.41 REMARK 500 2 ASN B 30 21.22 -157.72 REMARK 500 2 PHE B 38 30.98 -95.47 REMARK 500 2 VAL B 40 -64.44 -99.78 REMARK 500 2 GLN B 60 -20.86 -174.43 REMARK 500 2 ASN B 61 -71.09 -50.72 REMARK 500 3 MET A 2 85.57 -156.71 REMARK 500 3 ALA A 4 88.76 -59.47 REMARK 500 3 SER A 5 31.22 -158.97 REMARK 500 3 ASN A 30 19.87 -161.72 REMARK 500 3 ASP A 41 171.07 166.01 REMARK 500 3 GLN A 60 -37.46 -175.15 REMARK 500 3 ASN A 61 -76.11 -60.72 REMARK 500 3 ARG B 7 85.01 -174.80 REMARK 500 3 THR B 13 98.38 -36.77 REMARK 500 3 SER B 17 62.15 -109.19 REMARK 500 3 PRO B 19 91.11 -58.56 REMARK 500 3 ASN B 30 20.04 -162.64 REMARK 500 3 ASP B 41 170.90 164.96 REMARK 500 3 GLN B 60 -36.53 -175.66 REMARK 500 3 ASN B 61 -74.22 -61.25 REMARK 500 4 SER A 5 94.82 -63.85 REMARK 500 4 LEU A 8 -71.58 68.62 REMARK 500 4 SER A 17 97.71 -58.36 REMARK 500 4 ASN A 30 12.41 -156.16 REMARK 500 4 VAL A 40 -41.96 -135.73 REMARK 500 REMARK 500 THIS ENTRY HAS 298 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15324 RELATED DB: BMRB REMARK 900 RELATED ID: RPT6 RELATED DB: TARGETDB DBREF 2JRA A 1 67 UNP Q6N7Y3 Q6N7Y3_RHOPA 1 67 DBREF 2JRA B 1 67 UNP Q6N7Y3 Q6N7Y3_RHOPA 1 67 SEQRES 1 A 67 MET MET THR ALA SER ASP ARG LEU GLY ALA ASP PRO THR SEQRES 2 A 67 GLN ALA ALA SER SER PRO GLY GLY ALA ARG ALA VAL SER SEQRES 3 A 67 ILE VAL GLY ASN GLN ILE ASP SER ARG GLU LEU PHE THR SEQRES 4 A 67 VAL ASP ARG GLU ILE VAL ILE ALA HIS GLY ASP ASP ARG SEQRES 5 A 67 TYR ARG LEU ARG LEU THR SER GLN ASN LYS LEU ILE LEU SEQRES 6 A 67 THR LYS SEQRES 1 B 67 MET MET THR ALA SER ASP ARG LEU GLY ALA ASP PRO THR SEQRES 2 B 67 GLN ALA ALA SER SER PRO GLY GLY ALA ARG ALA VAL SER SEQRES 3 B 67 ILE VAL GLY ASN GLN ILE ASP SER ARG GLU LEU PHE THR SEQRES 4 B 67 VAL ASP ARG GLU ILE VAL ILE ALA HIS GLY ASP ASP ARG SEQRES 5 B 67 TYR ARG LEU ARG LEU THR SER GLN ASN LYS LEU ILE LEU SEQRES 6 B 67 THR LYS HELIX 1 1 SER A 34 PHE A 38 1 5 HELIX 2 2 SER B 34 PHE B 38 1 5 SHEET 1 A 2 ALA A 22 VAL A 28 0 SHEET 2 A 2 ALA B 22 VAL B 28 -1 O VAL B 25 N VAL A 25 SHEET 1 B 4 GLN A 31 ASP A 33 0 SHEET 2 B 4 GLU B 43 HIS B 48 1 O ALA B 47 N ILE A 32 SHEET 3 B 4 ASP B 51 LEU B 57 -1 O LEU B 55 N ILE B 44 SHEET 4 B 4 LEU B 63 THR B 66 -1 O ILE B 64 N ARG B 56 SHEET 1 C 4 LEU A 63 THR A 66 0 SHEET 2 C 4 ASP A 51 LEU A 57 -1 N ARG A 56 O ILE A 64 SHEET 3 C 4 GLU A 43 HIS A 48 -1 N ILE A 44 O LEU A 55 SHEET 4 C 4 GLN B 31 ASP B 33 1 O ILE B 32 N ALA A 47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1