HEADER RNA BINDING PROTEIN 21-JUN-07 2JRB TITLE C-TERMINAL DOMAIN OF ORF1P FROM MOUSE LINE-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF 1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 261-347; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NAIP3, BIRC1C, ORF 1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR K.JANUSZYK,R.CLUBB REVDAT 5 20-DEC-23 2JRB 1 REMARK REVDAT 4 09-MAR-22 2JRB 1 REMARK REVDAT 3 24-FEB-09 2JRB 1 VERSN REVDAT 2 15-JAN-08 2JRB 1 JRNL REVDAT 1 17-JUL-07 2JRB 0 JRNL AUTH K.JANUSZYK,P.W.LI,V.VILLAREAL,D.BRANCIFORTE,H.WU,Y.XIE, JRNL AUTH 2 J.FEIGON,J.A.LOO,S.L.MARTIN,R.T.CLUBB JRNL TITL IDENTIFICATION AND SOLUTION STRUCTURE OF A HIGHLY CONSERVED JRNL TITL 2 C-TERMINAL DOMAIN WITHIN ORF1P REQUIRED FOR JRNL TITL 3 RETROTRANSPOSITION OF LONG INTERSPERSED NUCLEAR ELEMENT-1. JRNL REF J.BIOL.CHEM. V. 282 24893 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17569664 JRNL DOI 10.1074/JBC.M702023200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JRB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100191. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HCCH-TOCSY; 3D HNHA; REMARK 210 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-13C NOESY; 3D HNHB; REMARK 210 3D HCCH-COSY; 3D HCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-40 REMARK 465 RES C SSSEQI REMARK 465 MET A 274 REMARK 465 GLN A 275 REMARK 465 VAL A 276 REMARK 465 THR A 277 REMARK 465 TYR A 278 REMARK 465 LYS A 279 REMARK 465 GLY A 280 REMARK 465 ARG A 281 REMARK 465 PRO A 282 REMARK 465 ILE A 283 REMARK 465 ARG A 284 REMARK 465 ILE A 285 REMARK 465 THR A 286 REMARK 465 PRO A 287 REMARK 465 ASP A 288 REMARK 465 THR A 354 REMARK 465 GLU A 355 REMARK 465 LYS A 356 REMARK 465 LYS A 357 REMARK 465 GLN A 358 REMARK 465 TYR A 359 REMARK 465 LYS A 360 REMARK 465 ASP A 361 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE1 TRP A 300 O ALA A 320 1.43 REMARK 500 O LEU A 343 H ASN A 346 1.47 REMARK 500 O THR A 306 H GLU A 309 1.48 REMARK 500 H LEU A 317 O LYS A 321 1.56 REMARK 500 O TYR A 318 N ALA A 320 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 310 -152.89 -118.88 REMARK 500 1 LEU A 317 -158.60 -93.97 REMARK 500 1 TYR A 318 144.45 -13.95 REMARK 500 1 PRO A 319 -22.57 -21.11 REMARK 500 1 ALA A 320 23.01 -150.26 REMARK 500 1 ASP A 327 28.96 42.35 REMARK 500 2 ARG A 308 -4.29 -58.22 REMARK 500 2 HIS A 310 -136.71 -133.29 REMARK 500 2 LYS A 311 69.80 -102.02 REMARK 500 2 CYS A 312 105.03 -164.86 REMARK 500 2 LEU A 317 -155.33 -98.21 REMARK 500 2 TYR A 318 146.24 -12.91 REMARK 500 2 PRO A 319 -26.56 -21.50 REMARK 500 2 ALA A 320 26.05 -148.87 REMARK 500 2 ASP A 327 25.65 44.51 REMARK 500 3 HIS A 310 -100.77 -132.50 REMARK 500 3 LYS A 311 85.41 -151.42 REMARK 500 3 CYS A 312 109.22 -172.58 REMARK 500 3 LEU A 317 -148.99 -104.82 REMARK 500 3 TYR A 318 143.13 -10.39 REMARK 500 3 PRO A 319 -25.19 -21.87 REMARK 500 3 ALA A 320 45.31 -154.36 REMARK 500 3 ASP A 327 27.03 42.33 REMARK 500 4 HIS A 310 -153.83 -128.47 REMARK 500 4 LEU A 317 -149.54 -104.03 REMARK 500 4 TYR A 318 142.31 -5.18 REMARK 500 4 PRO A 319 -19.26 -23.76 REMARK 500 4 ALA A 320 48.04 -164.14 REMARK 500 4 ASP A 327 27.57 43.51 REMARK 500 5 ARG A 308 -8.94 -55.59 REMARK 500 5 HIS A 310 -150.71 -131.21 REMARK 500 5 CYS A 312 101.55 -166.54 REMARK 500 5 LEU A 317 -150.13 -106.06 REMARK 500 5 TYR A 318 141.98 -6.22 REMARK 500 5 PRO A 319 -20.92 -22.28 REMARK 500 5 ALA A 320 41.28 -163.41 REMARK 500 5 ASP A 327 28.59 40.31 REMARK 500 6 GLU A 309 -5.00 -56.77 REMARK 500 6 HIS A 310 -96.95 -131.85 REMARK 500 6 LYS A 311 71.41 -153.29 REMARK 500 6 LEU A 317 -155.67 -96.62 REMARK 500 6 TYR A 318 141.79 -7.35 REMARK 500 6 PRO A 319 -23.75 -24.17 REMARK 500 6 ALA A 320 46.54 -153.79 REMARK 500 6 ASP A 327 25.40 46.36 REMARK 500 6 SER A 344 -7.22 -55.20 REMARK 500 7 ARG A 308 -6.92 -49.00 REMARK 500 7 HIS A 310 -149.76 -130.91 REMARK 500 7 LEU A 317 -149.67 -97.86 REMARK 500 7 TYR A 318 141.31 -9.22 REMARK 500 REMARK 500 THIS ENTRY HAS 293 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2JRB A 275 361 UNP Q60712 Q60712_MOUSE 261 347 SEQADV 2JRB MET A 274 UNP Q60712 CLONING ARTIFACT SEQRES 1 A 88 MET GLN VAL THR TYR LYS GLY ARG PRO ILE ARG ILE THR SEQRES 2 A 88 PRO ASP PHE SER PRO GLU THR MET LYS ALA ARG ARG ALA SEQRES 3 A 88 TRP THR ASP VAL ILE GLN THR LEU ARG GLU HIS LYS CYS SEQRES 4 A 88 GLN PRO ARG LEU LEU TYR PRO ALA LYS LEU SER ILE THR SEQRES 5 A 88 ILE ASP GLY GLU THR LYS VAL PHE HIS ASP LYS THR LYS SEQRES 6 A 88 PHE THR GLN TYR LEU SER THR ASN PRO ALA LEU GLN ARG SEQRES 7 A 88 ILE ILE THR GLU LYS LYS GLN TYR LYS ASP HELIX 1 1 GLU A 292 ARG A 308 1 17 HELIX 2 2 ASP A 335 THR A 345 1 11 HELIX 3 3 ASN A 346 ILE A 353 1 8 SHEET 1 A 3 ARG A 315 LEU A 317 0 SHEET 2 A 3 LYS A 321 THR A 325 -1 O LYS A 321 N LEU A 317 SHEET 3 A 3 THR A 330 PHE A 333 -1 O PHE A 333 N LEU A 322 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1