HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-JUN-07 2JRF TITLE SOLUTION NMR STRUCTURE OF TUBULIN POLYMERIZATION-PROMOTING PROTEIN TITLE 2 FAMILY MEMBER 3 FROM HOMO SAPIENS. NORTHEAST STRUCTURAL GENOMICS TITLE 3 TARGET HR387. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULIN POLYMERIZATION-PROMOTING PROTEIN FAMILY MEMBER 3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TPPP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: HR387-21; SOURCE 11 OTHER_DETAILS: THE PROTEIN IS A MONOMER BY GEL FILTRATION AND STATIC SOURCE 12 LIGHT SCATTERING. KEYWDS SOLUTION NMR STRUCTURE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.M.ARAMINI,P.ROSSI,R.SHASTRY,C.NWOSU,K.CUNNINGHAM,R.XIAO,J.LIU, AUTHOR 2 M.C.BARAN,P.K.RAJAN,T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 20-DEC-23 2JRF 1 REMARK REVDAT 4 09-MAR-22 2JRF 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JRF 1 VERSN REVDAT 2 06-MAY-08 2JRF 1 SOURCE REVDAT 1 17-JUL-07 2JRF 0 JRNL AUTH J.M.ARAMINI,P.ROSSI,R.SHASTRY,C.NWOSU,K.CUNNINGHAM,R.XIAO, JRNL AUTH 2 J.LIU,M.C.BARAN,P.K.RAJAN,T.B.ACTON,B.ROST,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF TUBULIN POLYMERIZATION-PROMOTING JRNL TITL 2 PROTEIN FAMILY MEMBER 3 FROM HOMO SAPIENS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, X-PLOR NIH 2.11.2, CNS 1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH), BRUNGER, ADAMS, REMARK 3 CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1554 CONFORMATIONALLY-RESTRICTING NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 120 DIHEDRAL ANGLE CONSTRAINTS, AND 74 HYDROGEN REMARK 3 BOND CONSTRAINTS (11.4 CONSTRAINTS PER RESIDUE, 2.6 LONG RANGE REMARK 3 CONSTRAINTS PER RESIDUE, COMPUTED FOR RESIDUES 1 TO 178 BY PSVS REMARK 3 1.3). STRUCTURE DETERMINATION WAS PERFORMED ITERATIVELY USING REMARK 3 AUTOSTRUCTURE (XPLOR-NIH). AFTER A FINAL XPLOR CALCULATION USING REMARK 3 THE CONSTRAINTS DERIVED FROM AUTOSTRUCTURE, THE 20 LOWEST ENERGY REMARK 3 STRUCTURES OUT OF 100 WERE FURTHER REFINED BY RESTRAINED REMARK 3 MOLECULAR DYANMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS). REMARK 4 REMARK 4 2JRF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100195. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 100 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.04 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM AMMONIUM ACETATE, REMARK 210 100 MM SODIUM CHLORIDE, 10 MM REMARK 210 DTT, 5 MM CALCIUM CHLORIDE, 0.02 REMARK 210 % SODIUM AZIDE, 95% H2O/5% D2O; REMARK 210 0.7 MM [U-5% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM AMMONIUM ACETATE, REMARK 210 100 MM SODIUM CHLORIDE, 10 MM REMARK 210 DTT, 5 MM CALCIUM CHLORIDE, 0.02 REMARK 210 % SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HN(COCA)CB; REMARK 210 3D HNCACB; 3D C(CO)NH-TOCSY; 3D REMARK 210 CCH-TOCSY; 3D CCH-TOCSY AROMATIC; REMARK 210 3D HCCH-COSY; 3D HNHA; 3D HCCH- REMARK 210 TOCSY; 2D 1H-13C HSQC HIGH RES. REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.4.0, SPARKY 3.110, REMARK 210 AUTOSTRUCTURE 2.1.1, NMRPIPE 2.3, REMARK 210 X-PLOR NIH 2.11.2, PSVS 1.3, REMARK 210 PDBSTAT 5.0, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE RESONANCE NMR REMARK 210 SPECTROSCOPY. AUTOMATED BACKBONE ASSIGNMENTS WERE MADE USING REMARK 210 AUTOASSIGN, AND THE SIDE CHAIN ASSIGNMENTS WERE COMPLETED REMARK 210 MANUALLY. AUTOMATIC NOESY ASSIGNMENTS AS WELL AS DISTANCE AND REMARK 210 HYDROGEN BOND CONSTRAINTS WERE DETERMINED USING AUTOSTRUCTURE. REMARK 210 DIHEDRAL ANGLE CONSTRAINTS WERE OBTAINED FROM TALOS. REMARK 210 COMPLETENESS OF NMR ASSIGNMENTS (EXCLUDING C-TERMINAL HHHHHH): REMARK 210 BACKBONE, 98.1%, SIDE CHAIN, 88.3%, AROMATICS, 91.8%, REMARK 210 STEREOSPECIFIC METHYL, 65.0%. FINAL STRUCTURE QUALITY FACTORS REMARK 210 (FOR RESIDUES 1 TO 178, PSVS 1.3), WHERE ORDERED RESIDUES [S(PHI) REMARK 210 + S(PSI) > 1.8] COMPRISE: 9-19,23-24,28-45,53-62,69-86,92-103: REMARK 210 (A) RMSD (ORDERED RESIDUES): BB, 0.6, HEAVY ATOM, 1.1. (B) REMARK 210 RAMACHANDRAN STATISTICS FOR ORDERED RESIDUES: MOST FAVORED, 95.0% REMARK 210 , ADDITIONALLY ALLOWED, 5.0%, GENEROUSLY ALLOWED, 0.0%, REMARK 210 DISALLOWED, 0.0%. (C) PROCHECK SCORES FOR ORDERED RESIDUES (RAW/ REMARK 210 Z-): PHI-PSI, 0.26/1.34, ALL, 0.18/1.06. (D) MOLPROBITY CLASH REMARK 210 SCORE (RAW/Z-): 12.78/-0.67. (E) RPF SCORES FOR GOODNESS OF FIT REMARK 210 TO NOESY DATA (RESIDUES 1-178): RECALL, 0.972, PRECISION, 0.878, REMARK 210 F-MEASURE, 0.922, DP-SCORE, 0.726. THE C-TERMINAL HIS TAG REMARK 210 RESIDUES OF THE PROTEIN (HHHHHH) WERE INCLUDED IN ALL STRUCTURE REMARK 210 CALCULATIONS BUT HAVE BEEN OMITTED FROM THIS DEPOSITION. REMARK 210 COORDINATES FOR THE FOLLOWING RESIDUES ARE NOT WELL DETERMINED REMARK 210 (S(PHI) + S(PSI) < 1.8): 1-8,20-22,25-27,46-52,63-68,87-91,104- REMARK 210 178 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 HIS A 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 96.07 64.07 REMARK 500 1 SER A 4 -68.25 176.98 REMARK 500 1 THR A 5 74.65 -101.38 REMARK 500 1 ALA A 8 -70.42 70.17 REMARK 500 1 HIS A 20 89.91 -62.13 REMARK 500 1 SER A 26 -53.72 73.11 REMARK 500 1 SER A 66 -77.61 54.23 REMARK 500 1 ALA A 67 117.88 46.88 REMARK 500 1 PRO A 108 71.97 -68.37 REMARK 500 1 ALA A 109 112.98 177.28 REMARK 500 1 VAL A 111 -67.45 65.77 REMARK 500 1 THR A 118 -28.52 178.57 REMARK 500 1 ASP A 123 27.68 -75.04 REMARK 500 1 ARG A 124 84.07 -66.35 REMARK 500 1 THR A 126 -49.03 70.84 REMARK 500 1 SER A 129 -67.53 66.20 REMARK 500 1 ARG A 130 -26.10 70.88 REMARK 500 1 TYR A 131 -85.60 54.16 REMARK 500 1 SER A 134 -85.94 -82.41 REMARK 500 1 HIS A 135 142.95 -171.61 REMARK 500 1 PHE A 139 80.42 -67.46 REMARK 500 1 ILE A 148 -71.93 64.44 REMARK 500 1 ALA A 149 -71.86 -150.42 REMARK 500 1 ARG A 151 -53.54 72.77 REMARK 500 1 GLN A 152 97.72 40.64 REMARK 500 1 ASP A 153 -82.71 -116.90 REMARK 500 1 TYR A 160 93.79 59.10 REMARK 500 1 LYS A 165 -164.47 62.65 REMARK 500 1 ASN A 166 -75.61 66.72 REMARK 500 1 ALA A 167 -80.54 55.86 REMARK 500 1 TYR A 170 -175.82 72.40 REMARK 500 1 LYS A 176 -76.54 58.29 REMARK 500 2 ALA A 2 -77.44 63.16 REMARK 500 2 SER A 4 -166.17 59.45 REMARK 500 2 SER A 26 16.43 55.76 REMARK 500 2 VAL A 50 113.88 -160.30 REMARK 500 2 LYS A 65 100.35 -50.98 REMARK 500 2 LYS A 88 -179.81 59.46 REMARK 500 2 PRO A 108 84.64 -65.90 REMARK 500 2 VAL A 111 88.24 -63.39 REMARK 500 2 VAL A 113 -53.20 -162.90 REMARK 500 2 ALA A 116 -73.65 72.44 REMARK 500 2 LYS A 117 -40.85 -179.22 REMARK 500 2 THR A 126 37.58 38.47 REMARK 500 2 SER A 134 -166.38 64.70 REMARK 500 2 HIS A 135 46.02 -149.96 REMARK 500 2 GLU A 137 -79.69 67.15 REMARK 500 2 ARG A 138 -48.36 -177.40 REMARK 500 2 GLU A 141 4.08 -155.75 REMARK 500 2 SER A 142 -85.26 53.35 REMARK 500 REMARK 500 THIS ENTRY HAS 593 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HR387 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE SEQUENCE CONFLICT AT POSITION 7 REMARK 999 IS A CLONING ARTIFACT DUE TO SEQUENCE ANNOTATION ERROR. DBREF 2JRF A 1 176 UNP Q9BW30 TPPP3_HUMAN 1 176 SEQADV 2JRF ILE A 7 UNP Q9BW30 MET 7 SEE REMARK 999 SEQADV 2JRF LEU A 177 UNP Q9BW30 CLONING ARTIFACT SEQADV 2JRF GLU A 178 UNP Q9BW30 CLONING ARTIFACT SEQADV 2JRF HIS A 179 UNP Q9BW30 CLONING ARTIFACT SEQADV 2JRF HIS A 180 UNP Q9BW30 CLONING ARTIFACT SEQADV 2JRF HIS A 181 UNP Q9BW30 CLONING ARTIFACT SEQADV 2JRF HIS A 182 UNP Q9BW30 CLONING ARTIFACT SEQADV 2JRF HIS A 183 UNP Q9BW30 CLONING ARTIFACT SEQADV 2JRF HIS A 184 UNP Q9BW30 CLONING ARTIFACT SEQRES 1 A 184 MET ALA ALA SER THR ASP ILE ALA GLY LEU GLU GLU SER SEQRES 2 A 184 PHE ARG LYS PHE ALA ILE HIS GLY ASP PRO LYS ALA SER SEQRES 3 A 184 GLY GLN GLU MET ASN GLY LYS ASN TRP ALA LYS LEU CYS SEQRES 4 A 184 LYS ASP CYS LYS VAL ALA ASP GLY LYS SER VAL THR GLY SEQRES 5 A 184 THR ASP VAL ASP ILE VAL PHE SER LYS VAL LYS GLY LYS SEQRES 6 A 184 SER ALA ARG VAL ILE ASN TYR GLU GLU PHE LYS LYS ALA SEQRES 7 A 184 LEU GLU GLU LEU ALA THR LYS ARG PHE LYS GLY LYS SER SEQRES 8 A 184 LYS GLU GLU ALA PHE ASP ALA ILE CYS GLN LEU VAL ALA SEQRES 9 A 184 GLY LYS GLU PRO ALA ASN VAL GLY VAL THR LYS ALA LYS SEQRES 10 A 184 THR GLY GLY ALA VAL ASP ARG LEU THR ASP THR SER ARG SEQRES 11 A 184 TYR THR GLY SER HIS LYS GLU ARG PHE ASP GLU SER GLY SEQRES 12 A 184 LYS GLY LYS GLY ILE ALA GLY ARG GLN ASP ILE LEU ASP SEQRES 13 A 184 ASP SER GLY TYR VAL SER ALA TYR LYS ASN ALA GLY THR SEQRES 14 A 184 TYR ASP ALA LYS VAL LYS LYS LEU GLU HIS HIS HIS HIS SEQRES 15 A 184 HIS HIS HELIX 1 1 ALA A 8 ILE A 19 1 12 HELIX 2 2 GLY A 32 CYS A 42 1 11 HELIX 3 3 THR A 51 LYS A 63 1 13 HELIX 4 4 TYR A 72 PHE A 87 1 16 HELIX 5 5 SER A 91 LEU A 102 1 12 SHEET 1 A 2 GLU A 29 ASN A 31 0 SHEET 2 A 2 VAL A 69 ASN A 71 -1 O ILE A 70 N MET A 30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1