HEADER ALLERGEN 27-JUN-07 2JRK TITLE NMR STRUCTURE AND EPITOPE MAPPING OF BLO T 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITE ALLERGEN BLO T 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 23-134; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLOMIA TROPICALIS; SOURCE 3 ORGANISM_COMMON: MITE; SOURCE 4 ORGANISM_TAXID: 40697; SOURCE 5 GENE: BLOT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-M KEYWDS BLO T 5, 3 HELICES BUNDLE, DUST MITE ALLERGEN, ALLERGEN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.CHAN,Y.MOK REVDAT 4 19-FEB-20 2JRK 1 SOURCE REMARK REVDAT 3 24-FEB-09 2JRK 1 VERSN REVDAT 2 19-AUG-08 2JRK 1 JRNL REVDAT 1 01-JUL-08 2JRK 0 JRNL AUTH S.L.CHAN,T.C.ONG,Y.F.GAO,Y.S.TIONG,D.Y.WANG,F.T.CHEW,Y.K.MOK JRNL TITL NUCLEAR MAGNETIC RESONANCE STRUCTURE AND IGE EPITOPES OF BLO JRNL TITL 2 T 5, A MAJOR DUST MITE ALLERGEN JRNL REF J.IMMUNOL. V. 181 2586 2008 JRNL REFN ISSN 0022-1767 JRNL PMID 18684949 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, CYANA REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JRK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100200. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-99% 13C; U-99% 15N] BLO REMARK 210 T 5, 90% H2O/10% D2O; 2 MM [U- REMARK 210 100% 13C] BLO T 5, 100% D2O; 2 REMARK 210 MM [U-99% 15N] BLO T 5, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D 1H REMARK 210 -13C NOESY; 3D 1H-15N NOESY; 2D REMARK 210 1H-15N HSQC; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 9 66.27 -157.58 REMARK 500 1 ARG A 11 99.04 54.78 REMARK 500 1 ASP A 15 151.86 61.83 REMARK 500 1 LEU A 18 73.94 -105.94 REMARK 500 1 SER A 48 79.32 -58.23 REMARK 500 1 LYS A 49 -51.36 -133.65 REMARK 500 1 GLU A 50 -71.98 -150.25 REMARK 500 1 LEU A 51 19.23 -69.09 REMARK 500 1 ASN A 83 -64.49 -128.02 REMARK 500 1 GLU A 106 -74.22 -77.52 REMARK 500 2 PHE A 10 -57.03 -149.61 REMARK 500 2 ARG A 11 171.54 52.02 REMARK 500 2 ILE A 19 75.22 35.59 REMARK 500 2 GLU A 20 93.47 64.83 REMARK 500 2 SER A 48 83.81 -55.98 REMARK 500 2 LYS A 49 -83.09 -136.91 REMARK 500 2 GLU A 50 -52.78 -145.19 REMARK 500 3 LYS A 7 147.03 -174.43 REMARK 500 3 GLU A 13 111.32 62.79 REMARK 500 3 ASP A 15 174.67 66.35 REMARK 500 3 HIS A 16 43.98 -140.13 REMARK 500 3 LEU A 18 -63.38 -122.66 REMARK 500 3 ILE A 19 121.68 55.68 REMARK 500 3 GLU A 20 107.66 52.27 REMARK 500 3 SER A 48 95.10 -55.88 REMARK 500 3 LYS A 49 -76.82 -146.92 REMARK 500 3 GLU A 50 -54.34 -145.07 REMARK 500 3 LYS A 54 -50.09 -124.91 REMARK 500 3 GLU A 106 -70.24 -73.53 REMARK 500 4 LYS A 7 104.08 59.84 REMARK 500 4 ASP A 15 86.46 -160.92 REMARK 500 4 SER A 48 101.36 -45.92 REMARK 500 4 LYS A 49 -72.74 -155.99 REMARK 500 4 GLU A 50 -51.60 -146.64 REMARK 500 4 GLN A 52 16.93 -58.29 REMARK 500 4 GLU A 53 -13.49 -159.03 REMARK 500 4 LEU A 82 -165.21 -113.46 REMARK 500 4 LYS A 105 2.12 -69.14 REMARK 500 4 GLU A 106 -70.45 -95.26 REMARK 500 5 LYS A 7 -170.51 48.60 REMARK 500 5 ARG A 11 -77.94 -138.34 REMARK 500 5 LEU A 17 -46.58 -160.36 REMARK 500 5 GLU A 20 50.44 -164.93 REMARK 500 5 SER A 48 94.03 -50.89 REMARK 500 5 LYS A 49 -69.22 -138.73 REMARK 500 5 GLU A 50 -53.49 -148.95 REMARK 500 5 ASP A 81 72.53 -66.33 REMARK 500 6 PHE A 14 -52.38 -135.26 REMARK 500 6 ASP A 15 147.28 54.74 REMARK 500 6 HIS A 16 126.65 168.49 REMARK 500 REMARK 500 THIS ENTRY HAS 90 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15345 RELATED DB: BMRB DBREF 2JRK A 6 117 UNP O96870 ALL5_BLOTA 23 134 SEQRES 1 A 112 LYS LYS ASP ASP PHE ARG ASN GLU PHE ASP HIS LEU LEU SEQRES 2 A 112 ILE GLU GLN ALA ASN HIS ALA ILE GLU LYS GLY GLU HIS SEQRES 3 A 112 GLN LEU LEU TYR LEU GLN HIS GLN LEU ASP GLU LEU ASN SEQRES 4 A 112 GLU ASN LYS SER LYS GLU LEU GLN GLU LYS ILE ILE ARG SEQRES 5 A 112 GLU LEU ASP VAL VAL CYS ALA MET ILE GLU GLY ALA GLN SEQRES 6 A 112 GLY ALA LEU GLU ARG GLU LEU LYS ARG THR ASP LEU ASN SEQRES 7 A 112 ILE LEU GLU ARG PHE ASN TYR GLU GLU ALA GLN THR LEU SEQRES 8 A 112 SER LYS ILE LEU LEU LYS ASP LEU LYS GLU THR GLU GLN SEQRES 9 A 112 LYS VAL LYS ASP ILE GLN THR GLN HELIX 1 1 GLU A 20 GLU A 45 1 26 HELIX 2 2 GLU A 50 GLU A 53 5 4 HELIX 3 3 LYS A 54 THR A 80 1 27 HELIX 4 4 ILE A 84 ILE A 114 1 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1