HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-JUN-07 2JRR TITLE SOLUTION NMR STRUCTURE OF Q5LLS5 FROM SILICIBACTER POMEROYI. NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET SIR90 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER POMEROYI; SOURCE 3 ORGANISM_TAXID: 89184; SOURCE 4 STRAIN: DSS-3, DSM 15171; SOURCE 5 ATCC: 700808; SOURCE 6 GENE: SP03846; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: SIR90-21.0; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 12 OTHER_DETAILS: THE PROTEIN IS A MONOMER BY GEL FILTRATION SOURCE 13 CHROMATOGRAPHY AND STATIC LIGHT SCATTERING. KEYWDS SOLUTION NMR STRUCTURE, PROTEIN, SIR90, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.V.T.SWAPNA,R.TEJERO,M.JIANG,K.CUNNINGHAM,M.MAGLAQUI,L.OWENS,J.LIU, AUTHOR 2 H.WANG,T.B.ACTON,R.XIAO,M.C.BARAN,B.ROST,G.T.MONTELIONE,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 20-DEC-23 2JRR 1 REMARK REVDAT 5 14-JUN-23 2JRR 1 REMARK REVDAT 4 19-FEB-20 2JRR 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JRR 1 VERSN REVDAT 2 06-MAY-08 2JRR 1 SOURCE REVDAT 1 17-JUL-07 2JRR 0 JRNL AUTH G.V.T.SWAPNA,R.TEJERO,M.JIANG,K.CUNNINGHAM,M.MAGLAQUI, JRNL AUTH 2 L.OWENS,J.LIU,H.WANG,T.B.ACTON,R.XIAO,M.B.BARAN,B.ROST, JRNL AUTH 3 G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF Q5LLS5 FROM SILICIBACTER POMEROYI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PSVS 1.3, CNS 1.1, X-PLOR NIH 2.11.2, REMARK 3 AUTOSTRUCTURE 2.1.1 REMARK 3 AUTHORS : BHATTACHARYA , HANG AND MONTELIONE (PSVS), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 819 CONFORMATIONALLY RESTRICTING NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 52 DIHEDRAL ANGLE CONSTRAINTS, AND 26 HYDROGEN BOND REMARK 3 CONSTRAINTS.(14.5 CONSTRAINTS PER RESIDUE, 5.2 LONG-RANGE REMARK 3 CONSTRAINTS PER RESIDUE, COMPUTED FOR RESIDUES 1-62 BY PSVS 1.3) REMARK 3 . RESIDUES 62-67 CORRESPOND TO THE HISTIDINES OF THE C-TERMINAL REMARK 3 TAG AND COULD NOT BE ASSIGNED. STRUCTURE DETERMINATION WAS REMARK 3 PERFORMED ITERATIVELY USING AUTOSTRUCTURE (XPLOR-NIH). AFTER A REMARK 3 FINAL XPLOR CALCULATION USING THE CONSTRAINTS DERIVED FROM REMARK 3 AUTOSTRUCTURE, THE 20 LOWEST ENERGY STRUCTURES OUT OF 100 WERE REMARK 3 FURTHER REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY REMARK 3 MINIMIZATION IN EXPLICIT WATER (CNS). THE C-TERMINAL HIS-TAG REMARK 3 RESIDUES OF THE PROTEIN WERE INCLUDED IN THE CALCULATIONS AS REMARK 3 WELL AS THE DEPOSITION. COORDINATES FOR THE FOLLOWING RESIDUES REMARK 3 ARE NOT WELL DETERMINED: 1-7,18-29,46-48,58-67. THE STRUCTURE REMARK 3 WAS DETERMINED USING STANDARD TRIPLE RESONANCE NMR EXPERIMENTS. REMARK 3 AUTOMATED BACKBONE ASSIGNMENTS WERE MADE USING AUTOASSIGN AND REMARK 3 THE SIDECHAIN ASSIGNMENTS WERE COMPLETED MANUALLY. AUTOMATIC REMARK 3 NOESY ASSIGNMENTS AS WELL AS DISTANCE, DIHEDRAL ANGLE AND REMARK 3 HYDROGEN-BOND CONSTRAINTS WERE DETERMINED USING AUTOSTRUCTURE. REMARK 3 STRUCTURE QUALITY FACTORS, WHERE ORDERED RESIDUES COMPRISE: 8-17, REMARK 3 30-45,49-57. RMSD OF BB 0.5A, HEAVY ATOMS 1.0A. RAMACHANDRAN REMARK 3 STATISTICS FOR ORDERED RESIDUES: MOST FAVOURED: 91.1%, REMARK 3 ADDITIONALLY ALLOWED: 8.9%, GENERALLY ALLOWED: 0.0%, REMARK 3 UNFAVOURABLE: 0%. PROCHECK SCORES FOR ORDERED RESIDUES (RAW/Z) REMARK 3 PHI-PSI: -0.56/-1.89; ALL -0.33/-1.95. MOLPROBITY CLASH SCORE REMARK 3 (RAW/Z) 17.48/-1.47. RPF SCORES FOR GOODNESS OF FIT TO NOESY REMARK 3 DATA: RECALL: 0.943, PRECISION: 0.92, F-MEASURE: 0.93. FINAL DP- REMARK 3 SCORE 0.795. REMARK 4 REMARK 4 2JRR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100207. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293; 293 REMARK 210 PH : 6.5; 6.5; 6.5 REMARK 210 IONIC STRENGTH : 100; 100; 100 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.65 MM 5% 13C, 100% 15N SIR90, REMARK 210 10 MM TRIS, 5 MM DTT, 100 MM REMARK 210 NACL, 95% H2O/5% D2O; 0.65 MM [U- REMARK 210 100% 13C; U-100% 15N] SIR90, 10 REMARK 210 MM TRIS, 5 MM DTT, 100 MM NACL, REMARK 210 95% H2O/5% D2O; 0.65 MM [U-100% REMARK 210 13C; U-100% 15N] SIR90, 10 MM REMARK 210 TRIS, 5 MM DTT, 100 MM NACL, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HNHA; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PDBSTAT 4.1, AUTOSTRUCTURE REMARK 210 2.1.1, NMRPIPE 2.3, SPARKY 3.110, REMARK 210 VNMR 6.1C, AUTOASSIGN 2.2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 3 13.26 47.34 REMARK 500 1 GLN A 4 -165.08 54.60 REMARK 500 1 ALA A 5 88.39 -150.58 REMARK 500 1 PRO A 6 85.77 -63.08 REMARK 500 1 ASP A 19 -66.35 -132.96 REMARK 500 1 ARG A 29 99.13 77.06 REMARK 500 1 THR A 38 -38.82 -131.16 REMARK 500 1 PRO A 44 15.61 -69.06 REMARK 500 1 TYR A 45 -72.21 -96.13 REMARK 500 1 GLU A 61 -75.57 69.30 REMARK 500 1 HIS A 64 -52.28 -151.17 REMARK 500 1 HIS A 66 -164.19 44.60 REMARK 500 2 GLN A 4 -76.74 66.51 REMARK 500 2 ALA A 5 103.16 62.24 REMARK 500 2 PRO A 6 87.83 -60.03 REMARK 500 2 ASP A 19 -75.21 -69.29 REMARK 500 2 ARG A 29 92.27 179.28 REMARK 500 2 TYR A 45 -87.64 -99.87 REMARK 500 2 CYS A 46 22.27 -169.78 REMARK 500 2 ASP A 47 -88.23 -87.75 REMARK 500 2 ALA A 59 18.95 -155.78 REMARK 500 2 HIS A 64 -47.86 71.46 REMARK 500 3 ILE A 3 -22.90 70.08 REMARK 500 3 ALA A 5 52.23 -153.45 REMARK 500 3 PRO A 6 91.23 -65.91 REMARK 500 3 CYS A 18 -164.93 -119.46 REMARK 500 3 GLU A 22 -152.76 -98.98 REMARK 500 3 PRO A 28 -57.71 -17.49 REMARK 500 3 ARG A 29 88.98 172.20 REMARK 500 3 TYR A 45 -93.58 -108.96 REMARK 500 3 ASP A 47 -107.39 -90.14 REMARK 500 3 HIS A 63 100.05 -171.91 REMARK 500 3 HIS A 64 -80.91 -156.18 REMARK 500 4 THR A 2 10.70 58.94 REMARK 500 4 GLN A 4 -71.61 62.83 REMARK 500 4 ALA A 5 82.62 66.57 REMARK 500 4 ARG A 29 89.94 174.48 REMARK 500 4 ASP A 47 78.26 57.70 REMARK 500 4 LYS A 53 102.50 -58.91 REMARK 500 4 ALA A 59 79.42 59.42 REMARK 500 4 HIS A 64 96.36 -69.56 REMARK 500 5 ILE A 3 13.96 -69.94 REMARK 500 5 GLN A 4 92.76 63.25 REMARK 500 5 ALA A 5 62.94 -172.96 REMARK 500 5 PRO A 6 29.98 -79.58 REMARK 500 5 LEU A 25 5.62 50.41 REMARK 500 5 ARG A 29 86.93 64.25 REMARK 500 5 TYR A 45 -89.90 -87.33 REMARK 500 5 CYS A 46 82.62 -152.45 REMARK 500 5 ASP A 47 -90.22 -149.98 REMARK 500 REMARK 500 THIS ENTRY HAS 196 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SIR90 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15341 RELATED DB: BMRB DBREF 2JRR A 1 59 UNP Q5LLS5 Q5LLS5_SILPO 1 59 SEQADV 2JRR LEU A 60 UNP Q5LLS5 CLONING ARTIFACT SEQADV 2JRR GLU A 61 UNP Q5LLS5 CLONING ARTIFACT SEQADV 2JRR HIS A 62 UNP Q5LLS5 CLONING ARTIFACT SEQADV 2JRR HIS A 63 UNP Q5LLS5 CLONING ARTIFACT SEQADV 2JRR HIS A 64 UNP Q5LLS5 CLONING ARTIFACT SEQADV 2JRR HIS A 65 UNP Q5LLS5 CLONING ARTIFACT SEQADV 2JRR HIS A 66 UNP Q5LLS5 CLONING ARTIFACT SEQADV 2JRR HIS A 67 UNP Q5LLS5 CLONING ARTIFACT SEQRES 1 A 67 MET THR ILE GLN ALA PRO GLU THR LYS ILE VAL ASP LYS SEQRES 2 A 67 SER ARG VAL ALA CYS ASP GLY GLY GLU GLY ALA LEU GLY SEQRES 3 A 67 HIS PRO ARG VAL TRP LEU GLN ILE PRO GLU ASP THR GLY SEQRES 4 A 67 TRP VAL GLU CYS PRO TYR CYS ASP CYS LYS TYR VAL LEU SEQRES 5 A 67 LYS GLY SER LYS ALA ASP ALA LEU GLU HIS HIS HIS HIS SEQRES 6 A 67 HIS HIS HELIX 1 1 SER A 55 ALA A 59 5 5 SHEET 1 A 3 GLU A 7 VAL A 11 0 SHEET 2 A 3 CYS A 48 LEU A 52 1 O VAL A 51 N VAL A 11 SHEET 3 A 3 TRP A 40 CYS A 43 -1 N VAL A 41 O TYR A 50 SHEET 1 B 2 ARG A 15 GLY A 20 0 SHEET 2 B 2 GLY A 26 GLN A 33 -1 O LEU A 32 N VAL A 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1