data_2JRZ # _entry.id 2JRZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2JRZ pdb_00002jrz 10.2210/pdb2jrz/pdb RCSB RCSB100215 ? ? WWPDB D_1000100215 ? ? BMRB 15348 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.db_id 15348 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2JRZ _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-06-29 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Koehler, C.' 1 'Bishop, S.' 2 'Dowler, E.F.' 3 'Diehl, A.' 4 'Schmieder, P.' 5 'Leidert, M.' 6 'Sundstrom, M.' 7 'Arrowsmith, C.H.' 8 'Wiegelt, J.' 9 'Edwards, A.' 10 'Oschkinat, H.' 11 'Ball, L.J.' 12 'Structural Genomics Consortium (SGC)' 13 # _citation.id primary _citation.title 'Backbone and sidechain 1H, 13C and 15N resonance assignments of the Bright/ARID domain from the human JARID1C (SMCX) protein.' _citation.journal_abbrev 'Biomol.Nmr Assign.' _citation.journal_volume 2 _citation.page_first 9 _citation.page_last 11 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country NE _citation.journal_id_ISSN 1874-2718 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19636912 _citation.pdbx_database_id_DOI 10.1007/s12104-007-9071-7 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Koehler, C.' 1 ? primary 'Bishop, S.' 2 ? primary 'Dowler, E.F.' 3 ? primary 'Schmieder, P.' 4 ? primary 'Diehl, A.' 5 ? primary 'Oschkinat, H.' 6 ? primary 'Ball, L.J.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Histone demethylase JARID1C' _entity.formula_weight 13748.627 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 1.14.11.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'Bright, ARID domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Jumonji/ARID domain-containing protein 1C, Protein SmcX, Protein Xe169' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIG SLLRSHYERIVYPYEMYQSGANLVCNTRPFDNEEKDK ; _entity_poly.pdbx_seq_one_letter_code_can ;SMNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIG SLLRSHYERIVYPYEMYQSGANLVCNTRPFDNEEKDK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 ASN n 1 4 GLU n 1 5 LEU n 1 6 GLU n 1 7 ALA n 1 8 GLN n 1 9 THR n 1 10 ARG n 1 11 VAL n 1 12 LYS n 1 13 LEU n 1 14 ASN n 1 15 TYR n 1 16 LEU n 1 17 ASP n 1 18 GLN n 1 19 ILE n 1 20 ALA n 1 21 LYS n 1 22 PHE n 1 23 TRP n 1 24 GLU n 1 25 ILE n 1 26 GLN n 1 27 GLY n 1 28 SER n 1 29 SER n 1 30 LEU n 1 31 LYS n 1 32 ILE n 1 33 PRO n 1 34 ASN n 1 35 VAL n 1 36 GLU n 1 37 ARG n 1 38 ARG n 1 39 ILE n 1 40 LEU n 1 41 ASP n 1 42 LEU n 1 43 TYR n 1 44 SER n 1 45 LEU n 1 46 SER n 1 47 LYS n 1 48 ILE n 1 49 VAL n 1 50 VAL n 1 51 GLU n 1 52 GLU n 1 53 GLY n 1 54 GLY n 1 55 TYR n 1 56 GLU n 1 57 ALA n 1 58 ILE n 1 59 CYS n 1 60 LYS n 1 61 ASP n 1 62 ARG n 1 63 ARG n 1 64 TRP n 1 65 ALA n 1 66 ARG n 1 67 VAL n 1 68 ALA n 1 69 GLN n 1 70 ARG n 1 71 LEU n 1 72 ASN n 1 73 TYR n 1 74 PRO n 1 75 PRO n 1 76 GLY n 1 77 LYS n 1 78 ASN n 1 79 ILE n 1 80 GLY n 1 81 SER n 1 82 LEU n 1 83 LEU n 1 84 ARG n 1 85 SER n 1 86 HIS n 1 87 TYR n 1 88 GLU n 1 89 ARG n 1 90 ILE n 1 91 VAL n 1 92 TYR n 1 93 PRO n 1 94 TYR n 1 95 GLU n 1 96 MET n 1 97 TYR n 1 98 GLN n 1 99 SER n 1 100 GLY n 1 101 ALA n 1 102 ASN n 1 103 LEU n 1 104 VAL n 1 105 CYS n 1 106 ASN n 1 107 THR n 1 108 ARG n 1 109 PRO n 1 110 PHE n 1 111 ASP n 1 112 ASN n 1 113 GLU n 1 114 GLU n 1 115 LYS n 1 116 ASP n 1 117 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'JARID1C, DXS1272E, SMCX, XE169' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant 'Rosetta DE3' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code JAD1C_HUMAN _struct_ref.pdbx_db_accession P41229 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSL LRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDK ; _struct_ref.pdbx_align_begin 73 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2JRZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 117 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P41229 _struct_ref_seq.db_align_beg 73 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 188 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 117 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2JRZ SER A 1 ? UNP P41229 ? ? 'cloning artifact' 1 1 1 2JRZ MET A 2 ? UNP P41229 ? ? 'cloning artifact' 2 2 1 2JRZ ? A ? ? UNP P41229 GLN 175 'SEE REMARK 999' ? 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 4 '3D CBCA(CO)NH' 1 2 4 '3D CBCANH' 1 3 1 '2D 1H-15N HSQC' 1 4 2 '2D 1H-13C HSQC' 1 5 4 '3D HNCA' 1 6 4 '3D HNCACO' 1 7 4 '3D HBHA(CO)NH' 1 8 4 '3D H(CCCO)NH-TOCSY' 1 9 4 '(H)CC(CO)NH-TOCSY' 1 10 2 '3D HCCH-TOCSY' 1 11 2 '3D HCCH-COSY' 1 12 1 '3D 1H-15N NOESY' 1 13 2 '3D 1H-13C NOESY' 1 14 4 '3D 1H-13C NOESY' 1 15 3 '2D 1H-15N HSQC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 297 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1 mM [U-100% 15N] JARID1C, 50 mM sodium phosphate, 50 mM sodium chloride, 0.02 % sodium azide, 5 mM DTT, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1 mM [U-13C; U-15N] JARID1C, 50 mM sodium phosphate, 50 mM sodium chloride, 0.02 % sodium azide, 5 mM DTT, 100% D2O' 2 '100% D2O' '1 mM [U-100% 15N] JARID1C, 50 mM sodium phosphate, 50 mM sodium chloride, 0.02 % sodium azide, 5 mM DTT, 100% D2O' 3 '100% D2O' '1 mM [U-13C; U-15N] JARID1C, 50 mM sodium phosphate, 50 mM sodium chloride, 0.02 % sodium azide, 5 mM DTT, 90% H2O/10% D2O' 4 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker DRX 1 'Bruker DRX' 750 Bruker DMX 2 'Bruker DMX' # _pdbx_nmr_refine.entry_id 2JRZ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2JRZ _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2JRZ _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection XwinNMR '2.6 and 3.1' 1 'Bruker Biospin' processing XwinNMR '2.6 and 3.1' 2 Goddard 'data analysis' Sparky 3.10 3 Goddard 'peak picking' Sparky 3.10 4 Goddard 'chemical shift assignment' Sparky 3.10 5 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2,0 6 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' 2.14 7 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' 2.14 8 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS ? 9 'Brunger, Adams, Clore, Gros, Nilges and Read' 'reffnement in explicit water' CNS ? 10 'Cornilescu, Delaglio and Bax' 'dihedral angle estimation' TALOS ? 11 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Ensemble of 20 lowest energy NMR structures of the Bright/ARID domain from the human JARID1C protein (Smcx homolog, X chromosome).' _exptl.entry_id 2JRZ _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2JRZ _struct.title 'Solution structure of the Bright/ARID domain from the human JARID1C protein.' _struct.pdbx_model_details 'Ensemble of 20 lowest energy NMR structures of the Bright/ARID domain from the human JARID1C protein (Smcx homolog, X chromosome).' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2JRZ _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'JARID1C, Bright/ARID domain, helical, Structural Genomics, Structural Genomics Consortium, SGC, OXIDOREDUCTASE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 2 ? ALA A 7 ? MET A 2 ALA A 7 1 ? 6 HELX_P HELX_P2 2 VAL A 11 ? ILE A 25 ? VAL A 11 ILE A 25 1 ? 15 HELX_P HELX_P3 3 ASP A 41 ? GLY A 53 ? ASP A 41 GLY A 53 1 ? 13 HELX_P HELX_P4 4 GLY A 54 ? ASP A 61 ? GLY A 54 ASP A 61 1 ? 8 HELX_P HELX_P5 5 ARG A 63 ? LEU A 71 ? ARG A 63 LEU A 71 1 ? 9 HELX_P HELX_P6 6 ASN A 78 ? ILE A 90 ? ASN A 78 ILE A 90 1 ? 13 HELX_P HELX_P7 7 VAL A 91 ? LEU A 103 ? VAL A 91 LEU A 103 1 ? 13 HELX_P HELX_P8 8 PRO A 109 ? LYS A 115 ? PRO A 109 LYS A 115 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 34 ? VAL A 35 ? ASN A 34 VAL A 35 A 2 ARG A 38 ? ILE A 39 ? ARG A 38 ILE A 39 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 35 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 35 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ARG _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 38 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 38 # _atom_sites.entry_id 2JRZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 MET 2 2 2 MET MET A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 TRP 23 23 23 TRP TRP A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 CYS 59 59 59 CYS CYS A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 MET 96 96 96 MET MET A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 CYS 105 105 105 CYS CYS A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 LYS 117 117 117 LYS LYS A . n # _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center SGC _pdbx_SG_project.project_name ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-10 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-02-19 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 5 'Structure model' 'Database references' 8 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif 7 5 'Structure model' database_2 8 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_database_status.status_code_cs' 2 4 'Structure model' '_pdbx_nmr_software.name' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;sequence Author stated that Q175 in UNP entry P41229 is not present in this protein, and the protein is an isoform of P41229. ; # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id JARID1C 1 mM '[U-100% 15N]' 1 'sodium phosphate' 50 mM ? 1 'sodium chloride' 50 mM ? 1 'sodium azide' 0.02 % ? 1 DTT 5 mM ? 1 JARID1C 1 mM '[U-13C; U-15N]' 2 'sodium phosphate' 50 mM ? 2 'sodium chloride' 50 mM ? 2 'sodium azide' 0.02 % ? 2 DTT 5 mM ? 2 JARID1C 1 mM '[U-100% 15N]' 3 'sodium phosphate' 50 mM ? 3 'sodium chloride' 50 mM ? 3 'sodium azide' 0.02 % ? 3 DTT 5 mM ? 3 JARID1C 1 mM '[U-13C; U-15N]' 4 'sodium phosphate' 50 mM ? 4 'sodium chloride' 50 mM ? 4 'sodium azide' 0.02 % ? 4 DTT 5 mM ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 10 ? ? 50.89 5.62 2 1 PRO A 33 ? ? -66.45 -170.87 3 1 LEU A 40 ? ? -68.69 90.91 4 1 LYS A 77 ? ? 48.15 17.84 5 1 LEU A 103 ? ? -169.56 119.45 6 1 ARG A 108 ? ? -93.68 -63.11 7 2 ARG A 10 ? ? 58.60 4.04 8 2 GLN A 26 ? ? -79.75 41.30 9 2 ILE A 90 ? ? -121.17 -50.61 10 2 TYR A 97 ? ? -64.52 -70.39 11 2 LEU A 103 ? ? -176.83 118.76 12 3 ARG A 10 ? ? 55.88 6.46 13 3 ARG A 37 ? ? 80.77 9.73 14 3 LYS A 77 ? ? 58.96 15.48 15 3 LEU A 103 ? ? -176.34 137.73 16 3 PHE A 110 ? ? -39.39 -73.14 17 3 LYS A 115 ? ? -113.20 79.95 18 4 ASN A 72 ? ? 81.36 4.31 19 4 TYR A 97 ? ? -61.95 -70.63 20 4 LEU A 103 ? ? -174.82 134.94 21 4 PRO A 109 ? ? -48.69 -16.95 22 4 LYS A 115 ? ? -81.58 -79.72 23 4 ASP A 116 ? ? 163.30 -49.33 24 5 ARG A 10 ? ? 59.28 4.84 25 5 LEU A 40 ? ? -67.34 91.01 26 5 LYS A 77 ? ? 48.43 17.18 27 5 ASN A 102 ? ? -99.29 -60.68 28 5 PRO A 109 ? ? -73.13 24.04 29 6 ARG A 10 ? ? 59.03 6.14 30 6 PRO A 33 ? ? -64.02 -171.33 31 6 LEU A 40 ? ? -67.85 93.03 32 6 ASN A 72 ? ? 82.85 9.71 33 6 LYS A 77 ? ? 69.84 -23.90 34 6 ILE A 90 ? ? -123.52 -56.23 35 6 ASN A 102 ? ? -91.36 -61.37 36 6 LEU A 103 ? ? -172.74 130.76 37 6 ASP A 116 ? ? 74.37 -56.56 38 7 ARG A 10 ? ? 57.39 4.71 39 7 ARG A 37 ? ? 81.23 16.36 40 7 ILE A 90 ? ? -123.96 -54.08 41 7 LEU A 103 ? ? -175.56 122.93 42 7 PRO A 109 ? ? -37.63 -36.59 43 8 ARG A 10 ? ? 57.42 5.28 44 8 LEU A 40 ? ? -68.83 90.71 45 8 PRO A 75 ? ? -71.75 -161.28 46 8 LEU A 103 ? ? -167.08 119.91 47 8 ASP A 116 ? ? 72.47 106.39 48 9 ALA A 7 ? ? -28.11 -62.71 49 9 ARG A 10 ? ? 58.81 3.73 50 9 ARG A 37 ? ? 75.63 -2.21 51 9 LEU A 40 ? ? -69.64 98.91 52 9 ASN A 72 ? ? 72.75 30.23 53 9 LYS A 77 ? ? 65.78 -0.77 54 9 TYR A 97 ? ? -53.46 -70.49 55 9 ASP A 116 ? ? -60.49 -77.79 56 10 ARG A 10 ? ? 59.37 5.63 57 10 PRO A 75 ? ? -60.11 -176.97 58 10 ILE A 90 ? ? -123.10 -55.01 59 10 TYR A 97 ? ? -66.15 -70.17 60 10 ASN A 102 ? ? -98.99 -61.11 61 10 LEU A 103 ? ? -174.53 124.42 62 11 ASN A 102 ? ? -100.35 -60.54 63 11 LEU A 103 ? ? -160.86 118.70 64 11 LYS A 115 ? ? -115.56 77.12 65 12 LEU A 40 ? ? -67.05 91.69 66 12 LYS A 77 ? ? 49.94 13.28 67 12 LEU A 103 ? ? -170.27 129.44 68 12 ASP A 116 ? ? 75.79 -55.47 69 13 PRO A 75 ? ? -57.98 171.13 70 13 LYS A 77 ? ? 72.92 -25.19 71 13 ASN A 102 ? ? -97.33 -62.13 72 13 LEU A 103 ? ? -173.60 119.17 73 14 ARG A 10 ? ? 55.89 6.12 74 14 GLN A 26 ? ? -76.94 30.03 75 14 PRO A 33 ? ? -67.23 -178.66 76 14 LEU A 40 ? ? -67.97 99.38 77 14 LEU A 103 ? ? -162.31 119.73 78 14 ASP A 116 ? ? 73.45 -61.09 79 15 ARG A 37 ? ? 81.42 2.83 80 15 ASN A 102 ? ? -99.89 -61.87 81 15 PRO A 109 ? ? -39.52 -32.00 82 16 ARG A 10 ? ? 59.56 4.99 83 16 LEU A 30 ? ? -65.79 93.62 84 16 LEU A 40 ? ? -69.54 97.94 85 16 ASN A 102 ? ? -99.53 -61.80 86 16 LEU A 103 ? ? -176.57 133.81 87 17 ALA A 7 ? ? -63.08 -72.44 88 17 ARG A 10 ? ? 59.34 3.61 89 17 GLN A 26 ? ? -82.65 32.69 90 17 LEU A 30 ? ? -68.17 96.75 91 17 ARG A 37 ? ? 80.25 11.28 92 17 LEU A 40 ? ? -68.56 96.41 93 17 TYR A 43 ? ? -56.15 -71.64 94 17 ASN A 72 ? ? 70.00 30.45 95 17 ILE A 90 ? ? -121.27 -51.95 96 17 ASN A 102 ? ? -100.34 -61.43 97 17 LYS A 115 ? ? -105.82 61.44 98 18 PRO A 75 ? ? -66.71 -152.27 99 18 ASN A 102 ? ? -100.36 -62.09 100 18 LEU A 103 ? ? -179.29 142.59 101 18 PRO A 109 ? ? -59.24 -7.51 102 18 ASP A 116 ? ? 62.31 102.82 103 19 ALA A 7 ? ? -67.06 -72.07 104 19 GLN A 26 ? ? -79.76 41.45 105 19 LEU A 40 ? ? -67.29 94.62 106 19 PRO A 75 ? ? -52.10 -77.72 107 19 LYS A 77 ? ? 68.08 -2.31 108 20 PRO A 33 ? ? -68.65 -174.54 109 20 LEU A 40 ? ? -68.86 90.25 110 20 PRO A 75 ? ? -66.56 -163.33 111 20 LYS A 77 ? ? 49.90 17.25 112 20 PRO A 109 ? ? -65.22 7.49 #