HEADER OXIDOREDUCTASE 29-JUN-07 2JRZ TITLE SOLUTION STRUCTURE OF THE BRIGHT/ARID DOMAIN FROM THE HUMAN JARID1C TITLE 2 PROTEIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEMETHYLASE JARID1C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRIGHT, ARID DOMAIN; COMPND 5 SYNONYM: JUMONJI/ARID DOMAIN-CONTAINING PROTEIN 1C, PROTEIN SMCX, COMPND 6 PROTEIN XE169; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JARID1C, DXS1272E, SMCX, XE169; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS JARID1C, BRIGHT/ARID DOMAIN, HELICAL, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.KOEHLER,S.BISHOP,E.F.DOWLER,A.DIEHL,P.SCHMIEDER,M.LEIDERT, AUTHOR 2 M.SUNDSTROM,C.H.ARROWSMITH,J.WIEGELT,A.EDWARDS,H.OSCHKINAT,L.J.BALL, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 7 08-MAY-24 2JRZ 1 REMARK REVDAT 6 14-JUN-23 2JRZ 1 REMARK REVDAT 5 19-FEB-20 2JRZ 1 REMARK SEQADV REVDAT 4 18-AUG-09 2JRZ 1 JRNL REVDAT 3 24-FEB-09 2JRZ 1 VERSN REVDAT 2 11-SEP-07 2JRZ 1 AUTHOR REVDAT 1 10-JUL-07 2JRZ 0 JRNL AUTH C.KOEHLER,S.BISHOP,E.F.DOWLER,P.SCHMIEDER,A.DIEHL, JRNL AUTH 2 H.OSCHKINAT,L.J.BALL JRNL TITL BACKBONE AND SIDECHAIN 1H, 13C AND 15N RESONANCE ASSIGNMENTS JRNL TITL 2 OF THE BRIGHT/ARID DOMAIN FROM THE HUMAN JARID1C (SMCX) JRNL TITL 3 PROTEIN. JRNL REF BIOMOL.NMR ASSIGN. V. 2 9 2008 JRNL REFN ISSN 1874-2718 JRNL PMID 19636912 JRNL DOI 10.1007/S12104-007-9071-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6 AND 3.1, X-PLOR NIH 2.14 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JRZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100215. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] JARID1C, 50 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, 5 REMARK 210 MM DTT, 90% H2O/10% D2O; 1 MM [U- REMARK 210 13C; U-15N] JARID1C, 50 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, 5 REMARK 210 MM DTT, 100% D2O; 1 MM [U-100% REMARK 210 15N] JARID1C, 50 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 5 MM DTT, REMARK 210 100% D2O; 1 MM [U-13C; U-15N] REMARK 210 JARID1C, 50 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 5 MM DTT, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D CBCANH; 2D 1H REMARK 210 -15N HSQC; 2D 1H-13C HSQC; 3D REMARK 210 HNCA; 3D HNCACO; 3D HBHA(CO)NH; REMARK 210 3D H(CCCO)NH-TOCSY; (H)CC(CO)NH- REMARK 210 TOCSY; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6 AND 3.1, SPARKY REMARK 210 3.10, CYANA 2,0, X-PLOR NIH 2.14, REMARK 210 CNS, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 10 5.62 50.89 REMARK 500 1 PRO A 33 -170.87 -66.45 REMARK 500 1 LEU A 40 90.91 -68.69 REMARK 500 1 LYS A 77 17.84 48.15 REMARK 500 1 LEU A 103 119.45 -169.56 REMARK 500 1 ARG A 108 -63.11 -93.68 REMARK 500 2 ARG A 10 4.04 58.60 REMARK 500 2 GLN A 26 41.30 -79.75 REMARK 500 2 ILE A 90 -50.61 -121.17 REMARK 500 2 TYR A 97 -70.39 -64.52 REMARK 500 2 LEU A 103 118.76 -176.83 REMARK 500 3 ARG A 10 6.46 55.88 REMARK 500 3 ARG A 37 9.73 80.77 REMARK 500 3 LYS A 77 15.48 58.96 REMARK 500 3 LEU A 103 137.73 -176.34 REMARK 500 3 PHE A 110 -73.14 -39.39 REMARK 500 3 LYS A 115 79.95 -113.20 REMARK 500 4 ASN A 72 4.31 81.36 REMARK 500 4 TYR A 97 -70.63 -61.95 REMARK 500 4 LEU A 103 134.94 -174.82 REMARK 500 4 PRO A 109 -16.95 -48.69 REMARK 500 4 LYS A 115 -79.72 -81.58 REMARK 500 4 ASP A 116 -49.33 163.30 REMARK 500 5 ARG A 10 4.84 59.28 REMARK 500 5 LEU A 40 91.01 -67.34 REMARK 500 5 LYS A 77 17.18 48.43 REMARK 500 5 ASN A 102 -60.68 -99.29 REMARK 500 5 PRO A 109 24.04 -73.13 REMARK 500 6 ARG A 10 6.14 59.03 REMARK 500 6 PRO A 33 -171.33 -64.02 REMARK 500 6 LEU A 40 93.03 -67.85 REMARK 500 6 ASN A 72 9.71 82.85 REMARK 500 6 LYS A 77 -23.90 69.84 REMARK 500 6 ILE A 90 -56.23 -123.52 REMARK 500 6 ASN A 102 -61.37 -91.36 REMARK 500 6 LEU A 103 130.76 -172.74 REMARK 500 6 ASP A 116 -56.56 74.37 REMARK 500 7 ARG A 10 4.71 57.39 REMARK 500 7 ARG A 37 16.36 81.23 REMARK 500 7 ILE A 90 -54.08 -123.96 REMARK 500 7 LEU A 103 122.93 -175.56 REMARK 500 7 PRO A 109 -36.59 -37.63 REMARK 500 8 ARG A 10 5.28 57.42 REMARK 500 8 LEU A 40 90.71 -68.83 REMARK 500 8 PRO A 75 -161.28 -71.75 REMARK 500 8 LEU A 103 119.91 -167.08 REMARK 500 8 ASP A 116 106.39 72.47 REMARK 500 9 ALA A 7 -62.71 -28.11 REMARK 500 9 ARG A 10 3.73 58.81 REMARK 500 9 ARG A 37 -2.21 75.63 REMARK 500 REMARK 500 THIS ENTRY HAS 112 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15348 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATED THAT Q175 IN UNP ENTRY P41229 IS REMARK 999 NOT PRESENT IN THIS PROTEIN, AND THE PROTEIN REMARK 999 IS AN ISOFORM OF P41229. DBREF 2JRZ A 3 117 UNP P41229 JAD1C_HUMAN 73 188 SEQADV 2JRZ SER A 1 UNP P41229 CLONING ARTIFACT SEQADV 2JRZ MET A 2 UNP P41229 CLONING ARTIFACT SEQADV 2JRZ A UNP P41229 GLN 175 SEE REMARK 999 SEQRES 1 A 117 SER MET ASN GLU LEU GLU ALA GLN THR ARG VAL LYS LEU SEQRES 2 A 117 ASN TYR LEU ASP GLN ILE ALA LYS PHE TRP GLU ILE GLN SEQRES 3 A 117 GLY SER SER LEU LYS ILE PRO ASN VAL GLU ARG ARG ILE SEQRES 4 A 117 LEU ASP LEU TYR SER LEU SER LYS ILE VAL VAL GLU GLU SEQRES 5 A 117 GLY GLY TYR GLU ALA ILE CYS LYS ASP ARG ARG TRP ALA SEQRES 6 A 117 ARG VAL ALA GLN ARG LEU ASN TYR PRO PRO GLY LYS ASN SEQRES 7 A 117 ILE GLY SER LEU LEU ARG SER HIS TYR GLU ARG ILE VAL SEQRES 8 A 117 TYR PRO TYR GLU MET TYR GLN SER GLY ALA ASN LEU VAL SEQRES 9 A 117 CYS ASN THR ARG PRO PHE ASP ASN GLU GLU LYS ASP LYS HELIX 1 1 MET A 2 ALA A 7 1 6 HELIX 2 2 VAL A 11 ILE A 25 1 15 HELIX 3 3 ASP A 41 GLY A 53 1 13 HELIX 4 4 GLY A 54 ASP A 61 1 8 HELIX 5 5 ARG A 63 LEU A 71 1 9 HELIX 6 6 ASN A 78 ILE A 90 1 13 HELIX 7 7 VAL A 91 LEU A 103 1 13 HELIX 8 8 PRO A 109 LYS A 115 1 7 SHEET 1 A 2 ASN A 34 VAL A 35 0 SHEET 2 A 2 ARG A 38 ILE A 39 -1 O ARG A 38 N VAL A 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1