HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JUN-07 2JS1 TITLE SOLUTION NMR STRUCTURE OF THE HOMODIMER PROTEIN YVFG FROM BACILLUS TITLE 2 SUBTILIS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR478 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YVFG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YVFG, BSU34210; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS HELICAL BUNDLE, HOMODIMER, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.A.MACNAUGHTAN,T.WELDEGHIORGHIS,X.WANG,S.BANSAL,F.TIAN,D.WANG, AUTHOR 2 H.JANJUA,K.CUNNINGHAM,L.-C.MA,R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA, AUTHOR 3 T.B.ACTON,B.ROST,G.T.MONTELIONE,J.H.PRESTEGARD,NORTHEAST STRUCTURAL AUTHOR 4 GENOMICS CONSORTIUM (NESG) REVDAT 7 14-JUN-23 2JS1 1 REMARK REVDAT 6 19-FEB-20 2JS1 1 REMARK SEQADV REVDAT 5 24-JAN-18 2JS1 1 AUTHOR JRNL REMARK REVDAT 4 24-FEB-09 2JS1 1 VERSN REVDAT 3 23-OCT-07 2JS1 1 REMARK REVDAT 2 14-AUG-07 2JS1 1 TITLE REVDAT 1 24-JUL-07 2JS1 0 JRNL AUTH M.A.MACNAUGHTAN,T.WELDEGHIORGHIS,X.WANG,S.BANSAL,F.TIAN, JRNL AUTH 2 D.WANG,H.JANJUA,K.CUNNINGHAM,L.-C.MA,R.XIAO,J.LIU,M.C.BARAN, JRNL AUTH 3 G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,J.H.PRESTEGARD JRNL TITL NMR STRUCTURE OF THE BACILLUS SUBTILIS PROTEIN YVFG. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, CYANA, X-PLOR NIH REMARK 3 AUTHORS : VARIAN (VNMRJ), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JS1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100217. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-13C; U-15N] PROTEIN, REMARK 210 10 MM TRIS, 100 MM SODIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 0.5 MM [U-13C; REMARK 210 U-15N] PROTEIN, 0.5 MM SR478, 10 REMARK 210 MM TRIS, 100 MM SODIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O; 0.9 MM [U-5% 13C; U-15N] REMARK 210 PROTEIN, 10 MM TRIS, 100 MM REMARK 210 SODIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 0.6 MM REMARK 210 [U-5% 13C; U-15N] PROTEIN, 10 MM REMARK 210 TRIS, 100 MM SODIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 4 % REMARK 210 PENTAETHYLENEGLYCOL MONODECYL REMARK 210 ETHER/HEXANOL, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 2D 1H-13C HSQC ALIPH; 2D REMARK 210 1H-13C HSQC ALIPH 13C-COUPLED; REMARK 210 3D HCCH-TOCSY; 3D CBCA(CO)NH; 3D REMARK 210 1H-13C NOESY ALIPH; 3D 1H-13C REMARK 210 NOESY ALIPH NC-14N; 3D 1H-15N REMARK 210 NOESY; 3D H(CCO)NH; 3D C(CO)NH; REMARK 210 3D 1H-13C NOESY AROMATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 2D 1H-15N REMARK 210 HSQC NH2; 2D 1H-15N HSQC RDC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, CYANA, X-PLOR REMARK 210 NIH, TALOS, PSVS, SMARTNOTEBOOK, REMARK 210 NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET B 30 H TYR B 34 1.45 REMARK 500 O THR A 40 H ASP A 44 1.49 REMARK 500 O ALA B 50 H LYS B 54 1.52 REMARK 500 O LEU B 4 H SER B 6 1.57 REMARK 500 OD1 ASP A 44 H GLN A 45 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 4 7.78 58.08 REMARK 500 1 MET A 20 -157.44 -104.51 REMARK 500 1 GLN A 22 39.82 -73.01 REMARK 500 1 SER A 23 50.86 75.76 REMARK 500 1 GLU A 24 -137.72 -143.62 REMARK 500 1 LYS A 26 -105.42 -84.25 REMARK 500 1 HIS A 28 -6.03 -57.61 REMARK 500 1 LEU A 46 51.72 -94.70 REMARK 500 1 SER A 71 54.11 -148.40 REMARK 500 1 LEU A 73 98.51 -59.86 REMARK 500 1 GLU A 74 43.06 -179.14 REMARK 500 1 HIS A 75 81.03 64.22 REMARK 500 1 HIS A 78 77.84 54.39 REMARK 500 1 GLU B 3 91.43 50.75 REMARK 500 1 LEU B 4 -158.23 -168.91 REMARK 500 1 PHE B 5 -44.01 68.85 REMARK 500 1 MET B 20 -145.04 -98.05 REMARK 500 1 ASN B 21 46.41 -170.63 REMARK 500 1 SER B 23 69.45 -179.97 REMARK 500 1 GLU B 24 -134.00 -165.08 REMARK 500 1 LYS B 26 -106.07 -83.23 REMARK 500 1 HIS B 28 8.09 -67.59 REMARK 500 1 ASP B 44 -84.20 -28.50 REMARK 500 1 GLN B 45 9.76 -162.78 REMARK 500 1 LEU B 46 42.00 26.03 REMARK 500 1 SER B 71 158.05 -43.16 REMARK 500 1 HIS B 76 -116.88 -169.76 REMARK 500 1 HIS B 77 5.93 -159.86 REMARK 500 1 HIS B 78 -172.91 51.56 REMARK 500 2 GLU A 3 71.79 56.75 REMARK 500 2 LEU A 4 -125.79 50.38 REMARK 500 2 PHE A 5 -69.92 59.25 REMARK 500 2 MET A 20 -65.00 -98.74 REMARK 500 2 ASN A 21 47.91 80.99 REMARK 500 2 SER A 23 64.91 -158.87 REMARK 500 2 GLU A 24 -132.09 -161.89 REMARK 500 2 LYS A 26 -104.62 -77.73 REMARK 500 2 HIS A 28 16.71 -68.05 REMARK 500 2 VAL A 42 27.31 -78.30 REMARK 500 2 GLN A 45 -64.86 67.31 REMARK 500 2 LEU A 46 43.34 36.96 REMARK 500 2 LYS A 48 131.32 -170.82 REMARK 500 2 LEU A 73 -75.48 -72.41 REMARK 500 2 HIS A 79 -165.59 52.58 REMARK 500 2 MET B 20 -119.76 -101.52 REMARK 500 2 ASN B 21 74.34 -176.42 REMARK 500 2 GLN B 22 -72.34 -79.89 REMARK 500 2 SER B 23 85.19 -172.99 REMARK 500 2 GLU B 24 -134.85 -169.73 REMARK 500 2 ASP B 25 -95.90 -135.36 REMARK 500 REMARK 500 THIS ENTRY HAS 587 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15350 RELATED DB: BMRB REMARK 900 CRYSTAL STRUCTURE OF SR478 REMARK 900 RELATED ID: SR478 RELATED DB: TARGETDB DBREF 2JS1 A 1 72 UNP P71066 YVFG_BACSU 1 72 DBREF 2JS1 B 1 72 UNP P71066 YVFG_BACSU 1 72 SEQADV 2JS1 LEU A 73 UNP P71066 EXPRESSION TAG SEQADV 2JS1 GLU A 74 UNP P71066 EXPRESSION TAG SEQADV 2JS1 HIS A 75 UNP P71066 EXPRESSION TAG SEQADV 2JS1 HIS A 76 UNP P71066 EXPRESSION TAG SEQADV 2JS1 HIS A 77 UNP P71066 EXPRESSION TAG SEQADV 2JS1 HIS A 78 UNP P71066 EXPRESSION TAG SEQADV 2JS1 HIS A 79 UNP P71066 EXPRESSION TAG SEQADV 2JS1 HIS A 80 UNP P71066 EXPRESSION TAG SEQADV 2JS1 LEU B 73 UNP P71066 EXPRESSION TAG SEQADV 2JS1 GLU B 74 UNP P71066 EXPRESSION TAG SEQADV 2JS1 HIS B 75 UNP P71066 EXPRESSION TAG SEQADV 2JS1 HIS B 76 UNP P71066 EXPRESSION TAG SEQADV 2JS1 HIS B 77 UNP P71066 EXPRESSION TAG SEQADV 2JS1 HIS B 78 UNP P71066 EXPRESSION TAG SEQADV 2JS1 HIS B 79 UNP P71066 EXPRESSION TAG SEQADV 2JS1 HIS B 80 UNP P71066 EXPRESSION TAG SEQRES 1 A 80 MET SER GLU LEU PHE SER VAL PRO TYR PHE ILE GLU ASN SEQRES 2 A 80 LEU LYS GLN HIS ILE GLU MET ASN GLN SER GLU ASP LYS SEQRES 3 A 80 ILE HIS ALA MET ASN SER TYR TYR ARG SER VAL VAL SER SEQRES 4 A 80 THR LEU VAL GLN ASP GLN LEU THR LYS ASN ALA VAL VAL SEQRES 5 A 80 LEU LYS ARG ILE GLN HIS LEU ASP GLU ALA TYR ASN LYS SEQRES 6 A 80 VAL LYS ARG GLY GLU SER LYS LEU GLU HIS HIS HIS HIS SEQRES 7 A 80 HIS HIS SEQRES 1 B 80 MET SER GLU LEU PHE SER VAL PRO TYR PHE ILE GLU ASN SEQRES 2 B 80 LEU LYS GLN HIS ILE GLU MET ASN GLN SER GLU ASP LYS SEQRES 3 B 80 ILE HIS ALA MET ASN SER TYR TYR ARG SER VAL VAL SER SEQRES 4 B 80 THR LEU VAL GLN ASP GLN LEU THR LYS ASN ALA VAL VAL SEQRES 5 B 80 LEU LYS ARG ILE GLN HIS LEU ASP GLU ALA TYR ASN LYS SEQRES 6 B 80 VAL LYS ARG GLY GLU SER LYS LEU GLU HIS HIS HIS HIS SEQRES 7 B 80 HIS HIS HELIX 1 1 VAL A 7 MET A 20 1 14 HELIX 2 2 ILE A 27 GLN A 45 1 19 HELIX 3 3 LYS A 48 GLY A 69 1 22 HELIX 4 4 SER B 6 MET B 20 1 15 HELIX 5 5 ILE B 27 GLN B 45 1 19 HELIX 6 6 LYS B 48 SER B 71 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1