HEADER ANTIMICROBIAL PROTEIN 02-JUL-07 2JSA TITLE SOLUTION STRUCTURE OF CAENOPORE-5 (81 PRO TRANS CONFOMER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAPOSIN-LIKE PROTEIN FAMILY PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: SPP-5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PIVEX2.4A KEYWDS CAENOPORE-5, SAPOSIN-LIKE FOLD, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 MDLTYP MINIMIZED AVERAGE AUTHOR J.MYSLIWY,J.GROTZINGER REVDAT 4 16-MAR-22 2JSA 1 REMARK SEQADV REVDAT 3 31-MAR-10 2JSA 1 JRNL REVDAT 2 24-FEB-09 2JSA 1 VERSN REVDAT 1 14-OCT-08 2JSA 0 JRNL AUTH J.MYSLIWY,A.J.DINGLEY,M.STANISAK,S.JUNG,I.LORENZEN,T.ROEDER, JRNL AUTH 2 M.LEIPPE,J.GROTZINGER JRNL TITL CAENOPORE-5: THE THREE-DIMENSIONAL STRUCTURE OF AN JRNL TITL 2 ANTIMICROBIAL PROTEIN FROM CAENORHABDITIS ELEGANS. JRNL REF DEV.COMP.IMMUNOL. V. 34 323 2010 JRNL REFN ISSN 0145-305X JRNL PMID 19917307 JRNL DOI 10.1016/J.DCI.2009.11.003 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, DYANA 1.5 REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), GUNTERT ET REMARK 3 AL. (DYANA 1.5) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JSA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100226. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297 REMARK 210 PH : 5.2 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2 MM [U-99% 13C; U-99% 15N] REMARK 210 CAENOPORE-5, 50 MM SODIUM REMARK 210 PHOSPHATE, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 H(CCO)NH; 3D C(CO)NH; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D HCCH- REMARK 210 TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 MET A -17 REMARK 465 SER A -16 REMARK 465 GLY A -15 REMARK 465 SER A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 49 H TYR A 52 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 85.72 53.71 REMARK 500 1 ALA A 3 -148.18 -175.04 REMARK 500 1 SER A 19 -94.41 -104.51 REMARK 500 1 ALA A 20 -35.08 160.25 REMARK 500 1 ALA A 33 -72.06 -55.79 REMARK 500 1 SER A 55 -34.46 172.61 REMARK 500 1 THR A 75 -64.15 -178.77 REMARK 500 1 ASN A 78 33.07 38.98 REMARK 500 2 ALA A 3 -146.02 -166.31 REMARK 500 2 ALA A 20 -4.93 82.29 REMARK 500 2 PHE A 39 33.11 -88.71 REMARK 500 2 THR A 41 61.28 -116.38 REMARK 500 2 PHE A 44 -2.43 77.03 REMARK 500 2 SER A 55 -50.67 -164.52 REMARK 500 2 VAL A 73 -93.73 -45.62 REMARK 500 2 THR A 75 -70.97 -38.01 REMARK 500 2 ASN A 78 28.55 42.04 REMARK 500 2 GLU A 79 66.87 -106.91 REMARK 500 2 CYS A 80 -54.47 169.43 REMARK 500 3 SER A 2 46.16 176.12 REMARK 500 3 ALA A 3 -64.15 177.53 REMARK 500 3 ALA A 20 -7.73 84.07 REMARK 500 3 PHE A 39 30.14 -85.91 REMARK 500 3 THR A 41 70.56 -119.69 REMARK 500 3 SER A 55 -33.46 171.58 REMARK 500 3 THR A 75 -58.86 -176.98 REMARK 500 3 CYS A 80 96.16 -177.34 REMARK 500 4 SER A 2 130.26 179.09 REMARK 500 4 ALA A 3 -153.47 -175.35 REMARK 500 4 ALA A 20 58.22 87.10 REMARK 500 4 ASP A 21 -26.09 162.12 REMARK 500 4 ILE A 27 -76.41 -86.76 REMARK 500 4 LYS A 36 -29.51 -39.62 REMARK 500 4 PRO A 43 -94.90 -75.08 REMARK 500 4 SER A 55 -40.29 -175.05 REMARK 500 4 THR A 75 -56.87 -145.43 REMARK 500 4 ASN A 78 16.75 55.70 REMARK 500 4 GLU A 79 56.86 -99.82 REMARK 500 4 CYS A 80 150.52 166.12 REMARK 500 5 SER A 2 50.33 79.03 REMARK 500 5 ALA A 3 -83.56 -179.05 REMARK 500 5 TYR A 16 -71.48 -78.18 REMARK 500 5 ILE A 42 141.90 -38.91 REMARK 500 5 SER A 55 -35.46 179.53 REMARK 500 5 THR A 75 -72.57 -176.58 REMARK 500 5 ASN A 78 56.78 77.76 REMARK 500 5 GLU A 79 -72.54 -105.73 REMARK 500 6 SER A 2 46.37 -179.81 REMARK 500 6 ALA A 3 -74.66 169.27 REMARK 500 6 TYR A 16 -71.65 -76.83 REMARK 500 REMARK 500 THIS ENTRY HAS 160 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JS9 RELATED DB: PDB DBREF 2JSA A 1 81 UNP Q86FL8 Q86FL8_CAEEL 23 103 SEQADV 2JSA MET A -17 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA SER A -16 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA GLY A -15 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA SER A -14 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA HIS A -13 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA HIS A -12 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA HIS A -11 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA HIS A -10 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA HIS A -9 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA HIS A -8 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA SER A -7 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA SER A -6 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA GLY A -5 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA ILE A -4 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA GLU A -3 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA GLY A -2 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA ARG A -1 UNP Q86FL8 EXPRESSION TAG SEQADV 2JSA GLY A 0 UNP Q86FL8 EXPRESSION TAG SEQRES 1 A 99 MET SER GLY SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 99 ILE GLU GLY ARG GLY ARG SER ALA LEU SER CYS GLN MET SEQRES 3 A 99 CYS GLU LEU VAL VAL LYS LYS TYR GLU GLY SER ALA ASP SEQRES 4 A 99 LYS ASP ALA ASN VAL ILE LYS LYS ASP PHE ASP ALA GLU SEQRES 5 A 99 CYS LYS LYS LEU PHE HIS THR ILE PRO PHE GLY THR ARG SEQRES 6 A 99 GLU CYS ASP HIS TYR VAL ASN SER LYS VAL ASP PRO ILE SEQRES 7 A 99 ILE HIS GLU LEU GLU GLY GLY THR ALA PRO LYS ASP VAL SEQRES 8 A 99 CYS THR LYS LEU ASN GLU CYS PRO HELIX 1 1 ALA A 3 GLU A 17 1 15 HELIX 2 2 ASP A 23 LEU A 38 1 16 HELIX 3 3 PHE A 44 HIS A 51 1 8 HELIX 4 4 LYS A 56 GLY A 67 1 12 HELIX 5 5 ALA A 69 LEU A 77 1 9 SSBOND 1 CYS A 6 CYS A 80 1555 1555 2.19 SSBOND 2 CYS A 9 CYS A 74 1555 1555 2.06 SSBOND 3 CYS A 35 CYS A 49 1555 1555 2.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1